The effect of protein dielectric coefficient on the ionic selectivity of a calcium channel

Calcium-selective ion channels are known to have carboxylate-rich selectivity filters, a common motif that is primarily responsible for their high Ca(2+) affinity. Different Ca(2+) affinities ranging from micromolar (the L-type Ca channel) to millimolar (the ryanodine receptor channel) are closely related to the different physiological functions of these channels. To understand the physical mechanism for this range of affinities given similar amino acids in their selectivity filters, we use grand canonical Monte Carlo simulations to assess the binding of monovalent and divalent ions in the selectivity filter of a model Ca channel. We use a reduced model where the electolyte is modeled by hard-sphere ions embedded in a continuum dielectric solvent, while the interior of protein surrounding the channel is allowed to have a dielectric coefficient different from that of the electrolyte. The induced charges that appear on the protein/lumen interface are calculated by the induced charge computation method [Boda et al., Phys. Rev. E 69, 046702 (2004)]. It is shown that decreasing the dielectric coefficient of the protein attracts more cations into the pore because the protein's carboxyl groups induce negative charges on the dielectric boundary. As the density of the hard-sphere ions increases in the filter, Ca(2+) is absorbed into the filter with higher probability than Na(+) because Ca(2+) provides twice the charge to neutralize the negative charge of the pore (both structural carboxylate oxygens and induced charges) than Na(+) while occupying about the same space (the charge/space competition mechanism). As a result, Ca(2+) affinity is improved an order of magnitude by decreasing the protein dielectric coefficient from 80 to 5. Our results indicate that adjusting the dielectric properties of the protein surrounding the permeation pathway is a possible way for evolution to regulate the Ca(2+) affinity of the common four-carboxylate motif.     

(De)constructing the ryanodine receptor: modeling ion permeation and selectivity of the calcium release channel

Biological ion channels are proteins that passively conduct ions across membranes that are otherwise impermeable to ions. Here, we present a model of ion permeation and selectivity through a single, open ryanodine receptor (RyR) ion channel. Combining recent mutation data with electrodiffusion of finite-sized ions, the model reproduces the current/voltage curves of cardiac RyR (RyR2) in KCl, LiCl, NaCl, RbCl, CsCl, CaCl(2), MgCl(2), and their mixtures over large concentrations and applied voltage ranges. It also reproduces the reduced K(+) conductances and Ca(2+) selectivity of two skeletal muscle RyR (RyR1) mutants (D4899N and E4900Q). The model suggests that the selectivity filter of RyR contains the negatively charged residue D4899 that dominates the permeation and selectivity properties and gives RyR a DDDD locus similar to the EEEE locus of the L-type calcium channel. In contrast to previously applied barrier models, the current model describes RyR as a multi-ion channel with approximately three monovalent cations in the selectivity filter at all times. Reasons for the contradicting occupancy predictions are discussed. In addition, the model predicted an anomalous mole fraction effect for Na(+)/Cs(+) mixtures, which was later verified by experiment. Combining these results, the binding selectivity of RyR appears to be driven by the same charge/space competition mechanism of other highly charged channels.     

Cation Selectivity of Channels Formed at Planar Lipid Bilayer by Pinellia ternata Lectin

By means of the two-compartment system. PTL-channels, the first lectin channels formed on planar lipid bilayers by Pinellia ternata lectin (PTL) have been studied. The results show (i) PTL-channels are voltage-independent and have apparent subunits; (ii) in 50 mmol/L KC1 and 25 mmol/L BaCl2 solutions, a single channel has unit conductance of 21 pS and 42 pS, respectively; (iii) the channel exhibits a slightly higher permeability to divalent than monovalent cation (PBa/PK=4.1), and (iv) the selectivity among divalent or monovalent cations is poor. The cation selectivity sequence for the channel will follow PBa(7. 0)-Psr (6. 4)~PMg(6. 4)>PK(1. 7)>PN.(1. 0)~PLi(l. 0).Moreover, these data also give explanation to the facilitatory action of PTL on the release of acetyl-choline from motor nerve terminals.     

Insight into the binding of divalent cations to Sepia eumelanin from IR absorption spectroscopy

IR absorption spectroscopy is used to examine the binding of the divalent cations Mg(II), Ca(II), Zn(II) and Cu(II) to melanin granules isolated from the ink sacs of Sepia officinalis. The functional groups of the melanin granules interacting with the bound metal ions are deduced by examining the effect of metal concentration on transition frequencies associated with the COOH, NH and OH moieties of the pigment. The coordinating groups vary with metal ion and with concentration. For the experimental conditions used (initial solution pH of 4, ionic strength of 100 mM and a melanin concentration of 1 mg mL(-1)) Mg(II), Ca(II) and Zn(II) bind to carboxylate groups and Cu(II) binds predominantly to phenolic (catechol) groups However, at a concentration of 10 mM Cu(II) also shows evidence of binding to carboxylate and amine groups, reflecting a secondary binding site that becomes populated as the catechol sites are depleted.     

Time-dependent ion selectivity in capacitive charging of porous electrodes

In a combined experimental and theoretical study, we show that capacitive charging of porous electrodes in multicomponent electrolytes may lead to the phenomenon of time-dependent ion selectivity of the electrical double layers (EDLs) in the electrodes. This effect is found in experiments on capacitive deionization of water containing NaCl/CaCl(2) mixtures, when the concentration of Na(+) ions in the water is five times the Ca(2+)-ion concentration. In this experiment, after applying a voltage difference between two porous carbon electrodes, first the majority monovalent Na(+) cations are preferentially adsorbed in the EDLs, and later, they are gradually replaced by the minority, divalent Ca(2+) cations. In a process where this ion adsorption step is followed by washing the electrode with freshwater under open-circuit conditions, and subsequent release of the ions while the cell is short-circuited, a product stream is obtained which is significantly enriched in divalent ions. Repeating this process three times by taking the product concentrations of one run as the feed concentrations for the next, a final increase in the Ca(2+)/Na(+)-ratio of a factor of 300 is achieved. The phenomenon of time-dependent ion selectivity of EDLs cannot be explained by linear response theory. Therefore, a nonlinear time-dependent analysis of capacitive charging is performed for both porous and flat electrodes. Both models attribute time-dependent ion selectivity to the interplay between the transport resistance for the ions in the aqueous solution outside the EDL, and the voltage-dependent ion adsorption capacity of the EDLs. Exact analytical expressions are presented for the excess ion adsorption in planar EDLs (Gouy-Chapman theory) for mixtures containing both monovalent and divalent cations.     

Investigation of the resistance of some naturally occurring and synthetic inorganic ion exchangers against gamma radiation

The effect of various doses of gamma radiation on the ion-exchange capacity, distribution coefficient values, elution behaviour, physical effect, pH titration and infrared spectra of some synthetic inorganic ion exchangers, namely the cerium substituted phosphates; and naturally occurring inorganic ion exchangers, zeolites from different parts of Iran, have been studied systematically.No significant change has been observed in the ion-exchange capacity (with the exception of CeP(Na), CeP(Di·Na) and zeolite 5 (deposits of arababad talas)), elution behaviour, physical effect, chemical stability and the infrared spectra of the synthetic ion exchangers irradiated upto a total dose of 200 kGy, while a change has been observed in the pH-titration and distribution behaviour. The increase in pH is sharper for irradiated samples with divalent cations than for the normal samples. Furthermore, the K_d values, and hence the selectivity towards certain cations increase with the total dose absorbed, reaching its optimum selectivity with the dose of 50–100 kGy. The natural zeolites chosen for these studies, show, similar pattern to those of synthetic ion exchangers, and in some cases an extremely high selectivity toward certain cations, like Be^II. These make, zeolites, which are naturally occurring ion exchangers more viable economically, and extremely useful alternative in this industry.     

Bipolar reverse osmosis membrane for separating mono-and divalent ions

Bipolar reverse osmosis membranes that have both negatively and positively charged layers have been prepared to enhance the selectivity towards mono- and divalent ions in respect of both cations and anions. Positively charged layers are formed on low pressure reverse osmosis membranes having negative charge (NTR-7410 and 7450) by an adsorption method using polyethyleneimine (PEI) or a quaternary ammonium polyelectrolyte (QAP). These layers attach to the membrane's dense layer, which is made of sulfonated polyether sulfone. The selectivity of mono- and divalent ions is proven by experimental results for single electrolytes (NaCl, Na₂SO₄ and MgCl₂). Although negatively charged membranes repulse divalent anions more strongly than cations and monovalent anions, bipolar reverse osmosis membranes reject both divalent cations and divalent anions better than monovalent ions. An optimal preparation method for bipolar membranes showing selectivity towards mono- and divalent ions were developed. The bipolar membranes showed good ion selectivity for artificial sea water.     

Study of Ca-ATMP precipitation in the presence of magnesium ion

ATMP (aminotri(methylenephosphonic acid)), a phosphonate scale inhibitor used in the petroleum industry, was used as a model scale inhibitor in this study. One of the goals of this work was to determine the range of conditions under which Mg ions, which are formed in reservoir formations containing dolomite, modulate the formation of Ca-ATMP precipitate as a scale inhibitor. The results revealed that the amount of ATMP precipitated decreased with addition of Mg ions in solution at all values of the solution pH. Furthermore, an increase in both the solution pH and the concentration of the divalent cations in solution resulted in a change of the molar ratio of (Ca + Mg) to ATMP in the precipitates. At a low solution pH (pH 1.5), Mg ions had little effect on the composition of the Ca-ATMP precipitate. However, at higher values of the solution pH (pH 4 and 7), the Ca to ATMP molar ratio in the precipitates decreased with increasing concentration of the Mg. Here it was found that Mg ions replaced Ca ions on available reactive sites of ATMP molecules. These results determined the limits of the Mg ion concentration, which affects the precipitation of Ca-ATMP, Mg-ATMP, and (Ca + Mg)-ATMP. The dissolution of the scale inhibitors was studied using a rotating disk reactor. These experiments showed that the total divalent cation molar ratio (Ca + Mg) to ATMP in the precipitates is the primary factor that controls the rate of dissolution (release) of the phosphonate precipitates. The phosphonate precipitate dissolution rates decreased as the molar ratio of divalent cations to ATMP in the precipitates increased.     

Studies on the equilibrium uptake of some metal ions on titanium arsenate and titanium tungstoarsenate gels using radiotracers

Sorption of some univalent, divalent and trivalent metal ions has been studied on the hydrogen form of titanium arsenate and titanium tungstoarsenate gels as a function of initial solution concentration at pH 5–6. The effect of pH on maximum uptake (Q_max) has also been seen for some representative ions. Sorption of metal ion becomes almost negligible below pH 1.8, with the exception of monovalent cations. Rubidium ions exhibit interesting adsorption behaviour. The data have been compared with the exchange properties of these two inorganic ion exchangers, as reported earlier^6,8.     

Dynamic interaction of fluoroquinolones with magnesium ions monitored using bacterial outer membrane nanopores

Divalent ions are known to have a severe effect on the translocation of several antibiotic molecules into (pathogenic) bacteria. In the present study we have investigated the effect of divalent ions on the permeability of norfloxacin across the major outer membrane channels from E. coli (OmpF and OmpC) and E. aerogenes (Omp35 and Omp36) at the single channel level. To understand the rate limiting steps in permeation, we reconstituted single porins into planar lipid bilayers and analyzed the ion current fluctuations caused in the presence of norfloxacin. Moreover, to obtain an atomistic view, we complemented the experiments with millisecond-long free energy calculations based on temperature-accelerated Brownian dynamics simulations to identify the most probable permeation pathways of the antibiotics through the respective pores. Both, the experimental analysis and the computational modelling, suggest that norfloxacin is able to permeate through the larger porins, i.e., OmpF, OmpC, and Omp35, whereas it only binds to the slightly narrower porin Omp36. Moreover, divalent ions can bind to negatively charged residues inside the porin, reversing the ion selectivity of the pore. In addition, the divalent ions can chelate with the fluoroquinolone molecules and alter their physicochemical properties. The results suggest that the conjugation with either pores or molecules must break when the antibiotic molecules pass the lumen of the porin, with the conjugation to the antibiotic being more stable than that to the respective pore. In general, the permeation or binding process of fluoroquinolones in porins occurs irrespective of the presence of divalent ions, but the presence of divalent ions can vary the kinetics significantly. Thus, a detailed investigation of the interplay of divalent ions with antibiotics and pores is of key importance in developing new antimicrobial drugs.

Divalent cations alter the translocation of antibiotic molecules through the Gram-negative bacteria outer membrane nanopores.     

Cation complexation with p-tert-butylcalix[5]arene pentacarboxylic acid derivative: an allosteric regulation of the first metal ion for stepwise extraction of the second ion

A calix[5]arene based solvent extraction reagent 3, appending carboxylic acid groups at the lower rim, has been developed and its complexation behavior towards some transition metal ions has been studied. The host 3 can selectively and quantitatively extract Pb(II) ions above pH 1.8 while other divalent ions such as Cu(II), Zn(II), Co(II), Ni(II) are extracted quantitatively only above pH 3.0. The outstanding Pb(II) selectivity of 3 comes from the size fit complementarity effect of the Pb(II) ion in the calix[5]arene cavity. One molecule of 3 extracts two Pb(II) ions in a stepwise manner. The first Pb(II) ion is extracted into the deep cavity of the calix[5]arene defined by phenoxy oxygen atoms. The first complexed Pb(II) ion acts as a template to bring the host into a cone conformation and induces a positive allosteric effect for the extraction of the second Pb(II) ion at an oxygen rich coordinating site composed of carboxyl groups. Both the Pb(II) ions are extracted through an ion exchange mechanism and the electroneutral complex in the organic phase is formed by the release of an equivalent number of hydrogen ions into aqueous solution. The loaded Pb(II) is easily back-extracted from Pb(II)-complexed 3 using dilute acid solution.     

压力对带有pH值可调聚电解质刷的仿生纳米孔中离子选择性的影响

具有pH值可调聚电解质（Polyelectrolyte,PE）刷的合成纳米孔的仿生离子通道在纳米尺度下离子、流体和生物粒子的主动运输控制方面具有重大应用潜力. 离子选择性是纳流体设备中离子传输的重要现象,具有很大的现实意义和实用价值. 本文提出了施加压力控制纳米孔中离子选择度的方法,综合研究了溶液pH值、浓度、外加电压和压力对离子选择度的影响. 仿真结果表明,离子选择度对压力的刺激是敏感的,且不像电压对离子选择度的影响会受到溶液pH值和浓度的制约,且方向不定,速度不可控;压力对离子选择度的影响不受溶液性质制约,并且灵活可控. 该结果对设计带pH值可调聚电解质刷的纳米孔有重要的启发作用.     

Molecular dynamics of nicotinic acetylcholine receptor correlating biological functions

The nicotinic acetylcholine receptor (nAChR) that mediates fast intercellular communication in response to neurotransmitters is a paradigm of ligand-gated ion channels. Molecular dynamics (MD) simulations are valuable in understanding membrane protein function at atomic level, providing useful clues for further experimental/theoretical studies. In this brief review, recent progress in MD simulations of the nAChR has been illustrated, mainly focusing on the latest simulation of the whole transmembrane domain of the receptor. On the basis of MD simulations, asymmetrical and asynchronous motions of five subunits were observed both in the ligand binding and transmembrane domains; a closed-to-open conformational shift of the gate was captured in different simulation systems; the contributions from the lipid molecules and other transmembrane segments rather than M2 to the gate switch as well as the conformational change of the whole channel were assessed; the dynamic behavior and related physical/chemical properties of the water molecules and cations within the ion channel were examined; and an experimentally comparable single-channel conductance and ion selectivity were obtained.     

Effect of metal ion exchange on the photocurrent response from bacteriorhodopsin on tin oxide electrodes

The transient photocurrent response from bacteriorhodopsin (bR) on tin oxide electrodes was strongly influenced by metal ions bound to bR molecules. The photocurrent polarity reversal pH, which corresponded to the pH value for the reversal of the proton release/uptake sequence in the bR photocycle, of cation-substituted purple membrane (PM) was shifted to lower pH with the increase in the cation affinities to carboxyl groups and a close correlation was noted between the two values. This suggests that the metal ion present in the extracellular region of a bR molecule modulates the pK(a) of proton release groups of bR by stabilizing the ionized state of the proton-releasing glutamic acids. The behavior of photocurrents at light-off in alkaline media, reflecting the proton uptake by bR, was unchanged by binding monovalent (Na(+) and K(+)) or divalent cations (Mg(2+) and Ca(2+)), but was drastically changed by binding La(3+) ions. This can be explained by invoking a substantial slowing of the proton uptake process in the presence of La(3+).     

A Membrane Sensor for Selective Determination of Bisacodyl in Tablets

A novel PVC membrane sensor for bisacodyl based on bisacodyl‐phosphotungstate ion pair complex was prepared. The influence of membrane composition (i.e. percent of PVC, plasticizer, and ion‐pair complex), pH of test solution and foreign cations on the electrode performance were investigated. The optimized membrane demonstrates Nernstian response (60.3 ± 2.1 mV per decade) for bisacodyl cations over a wide linear range from 8.0 × 10^?5 to 5.0 × 10^?3 M at 25 °C. The potentiometric response is independent from the pH of the solution in the pH range of 1.5–3.5. The proposed sensor has the advantages of easy preparation, good selectivity, fast response time, and small interferences from hydrogen ions. It was successfully used for determination of bisacodyl in tablets, and the results obtained with the electrode were in good agreement with the official chromatographic method.     

Potentiometric behavior of N,N,N',N'-tetrabenzylmethylenediamine-based hydrogen ion-selective electrodes

H(+)-ion selective electrodes (H(+)-ISE) based on N,N,N',N'-tetrabenzylalkylenediamine (alkylene: methylene, ethylene, propylene, hexylene) are prepared. We are compared with their response potentials to carbon numbers between diamino groups. They were showed linear selective to hydrogen ion in the range of pH 1.5-9.0, 2.5-9.0, 3.5-9.0 and 4.0-9.0, and their Nernstian slopes were 57.3, 53.5, 57.4 and 56.1 mV pH(-1) at 20+/-0.2 degrees C (theoretical value: 58.2 mV pH(-1)), respectively. The interference effect on the cations were measured to alkali metal ions, alkaline earth metals ions. Selectivity coefficients were measured by the mixed-solution method. Among all electrodes the N,N,N',N'-tetrabenzylmethylenediamine (TBMDA)-based electrode has shown the best selectivity in acidic solution.     

Indirect ultraviolet spectrophotometric detection in the ion chromatography of common mono- and divalent cations on an aluminium adsorbing silica gel column with tyramine-containing crown ethers as eluent

The application of laboratory-made aluminium-adsorbing silica gel (Al-Silica) as a cation-exchange stationary phase to ion chromatography-indirect photometric detection (IC-IPD) for common mono- and divalent cations (Li+, Na+, NH+, K+, Mg2+ and Ca2+) was carried out by using protonated tyramine (4-aminoethylphenol) as eluent ion. When using 1.2 mM tyramine-0.2 mM oxalic acid at pH 4.5 as eluent, incomplete separation of the monovalent cations and complete separation of the divalent cations were achieved in 17 min. Then, the addition of crown ethers in the eluent was carried out for the complete separation of the mono- and divalent cations. As a result, when using 1.2 mM tyramine--0.2 mM oxalic acid at pH 4.5 containing either 5 mM 15-crown-5 (1,4,7,10,13-pentaoxacyclopentadecane) or 0.5 mM and 18-crown-6 (1,4,7,10,13,16-hexaoxacyclooctadecane) as eluent, excellently simultaneous separation of these cations was achieved in 21 min. The proposed IC-IPD was successfully applied to the determination of major cations in natural water samples.     

Interaction of three pradimicin derivatives with divalent cations in aqueous solution

This study focused on further analysis of the aggregation behavior of pradimicin derivatives and their interaction with cations in aqueous solution. BMY was compared with two other pradimicin antibiotics (T2 and FB) with the same aglycone moiety but consisting of different substitute groups. The surface tension measurement showed a clear critical micelle concentration at 1-2 mM of the BMY aqueous solution. The role of Zn2+ in replacing the Ca2+ was examined using 1H nuclear magnetic resonance (NMR) method. From changes in the NMR spectrum and precipitability, it was concluded that zinc ion has lower affinity and higher precipitating ability to BMY than the divalent cations of alkaline earth metal. The aggregation behavior of T2 and FB in aqueous solution was also studied using NMR method. The results suggest that the supramolecular behavior of T2 is similar to BMY whether or not Ca2+ ions are present in solution and that there are two binding sites for calcium ions in a T2 molecule. Unlike BMY and T2, the NMR spectrum of FB does not show distinct change upon Ca2+ addition. The interaction of pradimicin antibiotics with divalent metal ions was thought to be related to ionic electronegativity and to the amphoteric property of the antibiotics.     

Squalyl Crown Ether Self‐Assembled Conjugates: An Example of Highly Selective Artificial K+ Channels

The natural KcsA K⁺ channel, one of the best‐characterized biological pore structures, conducts K⁺ cations at high rates while excluding Na⁺ cations. The KcsA K⁺ channel is of primordial inspiration for the design of artificial channels. Important progress in improving conduction activity and K⁺/Na⁺ selectivity has been achieved with artificial ion‐channel systems. However, simple artificial systems exhibiting K⁺/Na⁺ selectivity and mimicking the biofunctions of the KcsA K⁺ channel are unknown. Herein, an artificial ion channel formed by H‐bonded stacks of squalyl crown ethers, in which K⁺ conduction is highly preferred to Na⁺ conduction, is reported. The K⁺‐channel behavior is interpreted as arising from discreet stacks of dimers resulting in the formation of oligomeric channels, in which transport of cations occurs through macrocycles mixed with dimeric carriers undergoing dynamic exchange within the bilayer membrane. The present highly K⁺‐selective macrocyclic channel can be regarded as a biomimetic alternative to the KcsA channel.