A novel aptasensor strategy for protein detection based on G-quadruplex and exonuclease Ⅲ-aided recycling amplification

The detection of biomarkers is of great significance in the diagnosis of numerous diseases,especially cancer.Herein,we developed a sensitive and universal fluorescent aptasensor strategy based on magnetic beads,DNA G-quadruplex,and exonuclease III(Exo III).In the presence of a target protein,a label-free single strand DNA(ssDNA) hybridized with the aptamer was released as a trigger DNA due to specific recognition between the aptamer and target.Subsequently,ssDNA initiates the Exo Ⅲ-aided recycling to amplify the fluorescence signal,which was caused by N-methylmesoporphyrin IX(NMM)insertion into the G-quadruplex structure.This proposed strategy combines the excellent specificity between the aptamer and target,high sensitivity of the fluorescence signal by G-quadruplex and Exo Ⅲ-aided recycling amplification.We selected(50-1200 nmol/L) MUC1,a common tumor biomarker,as the proof-of-concept target to test the specificity of our aptasenso r.Results reveal that the sensor sensitively and selectively detected the target protein with limits of detection(LODs) of 3.68 and 12.83 nmol/L in buffer solution and 10% serum system,respectively.The strategy can be easily applied to other targets by simply substituting corresponding aptamers and has great potential in the diagnosis and monitoring of several diseases.     

A sensitive electrochemical aptasensor based on palladium nanoparticles decorated graphene–molybdenum disulfide flower-like nanocomposites and enzymatic signal amplification

In the present study, with the aggregated advantages of graphene and molybdenum disulfide (MoS₂), we prepared poly(diallyldimethylammonium chloride)–graphene/molybdenum disulfide (PDDA–G–MoS₂) nanocomposites with flower-like structure, large surface area and excellent conductivity. Furthermore, an advanced sandwich-type electrochemical assay for sensitive detection of thrombin (TB) was fabricated using palladium nanoparticles decorated PDDA–G–MoS₂ (PdNPs/PDDA–G–MoS₂) as nanocarriers, which were functionalized by hemin/G-quadruplex, glucose oxidase (GOD), and toluidine blue (Tb) as redox probes. The signal amplification strategy was achieved as follows: Firstly, the immobilized GOD could effectively catalyze the oxidation of glucose to gluconolactone, coupling with the reduction of the dissolved oxygen to H₂O₂. Then, both PdNPs and hemin/G-quadruplex acting as hydrogen peroxide (HRP)-mimicking enzyme could further catalyze the reduction of H₂O₂, resulting in significant electrochemical signal amplification. So the proposed aptasensor showed high sensitivity with a wide dynamic linear range of 0.0001 to 40 nM and a relatively low detection limit of 0.062 pM for TB determination. The strategy showed huge potential of application in protein detection and disease diagnosis.     

Recent progress in the design of G-quadruplex–based electrochemical aptasensors

Aptamer-based electrochemical sensors are now developed for the detection of a wide variety of analytes including ions, low-molecular-weight molecules, proteins, and living cells. An aptamer-based sensor is an analytical device whose bio-sensing element (i.e. the aptamer) is immobilized on a transducer surface. Aptasensors have attracted great attention because of their high selectivity, sensitivity, and stability; they could be miniaturized and are of low production cost and offer extraordinary flexibility in the design of their assemblies. This review will emphasize recent developments of aptasensors using aptamers that are able to adopt the particular G-quadruplex (G4) conformations, which are secondary DNA structures formed from guanine-rich sequences. Indeed, G4 exhibits notable recognition properties inherent to their particular structuration.     

An electrochemical aptasensor based on cu2+-induced signal amplification strategy for the detection of ochratoxin aEI北大核心CSCD

A novel electrochemical aptasensor based on a Cu2+-induced signal amplification strategy was constructed for the rapid, sensitive and specific detection of ochratoxin A （OTA）. The OTA aptamer with poly （T） was hybridized with the captured DNA probe on the electrode surface. In the presence of Cu2+ and ascorbic acid, the end of poly（T） was used as a template to in situ grow copper nanoclusters （Cu NCs）. In the absence of targeted OTA, the gold electrodes after decorating Cu NCs were immersed into an acidic environment to release Cu2+. After enriching Cu2+ at a potential of − 1.6 V, the strongest current value of copper was recorded by measuring differential pulse voltammetry （DPV）. In the presence of OTA, the OTA aptamer was tightly bound to the target OTA. The OTA aptamer broke away from the electrode to reduce the growth of Cu NCs, resulting in lower DPV current response. This proposed method was employed to detect OTA with linear range from 0.1 to 50.0 ng/mL, and the detection limit was 41.2 pg/mL. The Cu2+-induced electrochemical aptasensor can be further applied in the analysis of target OTA in coffee solution samples. © 2023, Youke Publishing Co.,Ltd. All rights reserved.     

A combined electrochemical and DFT study of the lattice strain effect on the surface reactivity of Pd

We report a combined study of electrochemical experiments and ab initio calculations on tuning the surface reactivity of Pd via a compressive lattice strain achieved by employing nanoparticles of Pd-Cu alloys with a Pd-rich surface.Surface oxygen-containing species were used as the probing molecule for revealing the surface reactivity.Both density functional theory (DFT) calculations and experiments showed linear relationships,with very close slopes,between the adsorption strength of OH_(ads) and the Pd lattice constant.Not only is this work a successful realization of controllable modulation in the surface reactivity,but it also provides valuable information for the rational design of Pd-based catalysts for fuel cell applications.     

An electrochemical signal switch–based (on–off) aptasensor for sensitive detection of insulin on gold-deposited screen-printed electrodes

Journal of Solid State Electrochemistry - Insulin hormone is of great importance for many diseases, especially for diabetes management. Therefore, different detection strategies have been used for...     

Synthesis and electrochemical characteristics of polymeric bimetallic Pt—Pd nanocatalysts

A method for the formation of catalytically active functional electrode nanocomposites with bimetallic platinum—palladium nanoparticles supported on a polymer matrix is described. The phase composition of nanocomposites was examined by X-ray powder diffraction, scanning electron microscopy and cyclic voltammetry were also applied in the study.     

The influence of thermal treatment on the electrochemical properties of carbon–Ni–Pd composites

Resorcinol–formaldehyde (RF) hydrogel and RF–nickel–palladium (RF–Ni–Pd) hydrogel were synthesized by sol–gel polycondensation followed by ambient drying. Carbon gel and carbon–nickel–palladium doped gels were prepared by carbonizing the RF and RF–Ni–Pd gels at 900 °C under a nitrogen atmosphere. The goal of this study was to determine the effect of oxidative thermal treatment on the electrochemical activity of nickel–palladium doped carbon gels (C–Ni–Pd). The scanning electron microscopy analysis, adsorption and X-ray diffraction measurements showed that the admixture of Ni and Pd to carbon matrix resulted in the modification of morphological, porous and crystalline features. It has been demonstrated that composite C–Ni–Pd composed of sphere-like granules incrusted with well-crystalline nickel and palladium particles exhibits electrochemical activity in 6 M KOH aqueous solution. Thermal treatment of the composite carried out in air at 450 °C brought about the improvement of electrochemical activity in the potential range of the hydrogen sorption/desorption reaction.     

An electrochemical microRNAs biosensor with the signal amplification of alkaline phosphatase and electrochemical–chemical–chemical redox cycling

MicroRNAs (MiRNAs) have been regarded as clinically important biomarkers and drug discovery targets. In this work, we reported a simple and ultrasensitive electrochemical method for miRNAs detection based on single enzyme amplification and electrochemical–chemical–chemical (ECC) redox cycling. Specifically, upon contact with the target miRNAs, the hairpin structure of biotinylated DNA immobilized on gold electrode was destroyed and the biotin group in DNA was forced away from the electrode surface, allowing for the coupling of streptavidin-conjugated alkaline phosphatase (SA-ALP). Then, ascorbic acid (AA, the enzymatic product of ALP) triggered the ECC redox cycling with ferrocene methanol (FcM) and tris(2-carboxyethyl)phosphine (TCEP) as the redox mediator and the chemical reducing reagent, respectively. The method was more sensitive than that with horseradish peroxidase (HRP) or glucose oxidase (GOx) triggered recycling since one ALP molecule captured by one target miRNA molecule promoted the production of thousands of AA. Analytical merits (e.g., detection limit, dynamic range, specificity, regeneration and reproducibility) were evaluated. The feasibility of the method for analysis of miRNA-21 in human serum has also been demonstrated.     

Nanostructured catalysts for direct electrooxidation of dimethyl ether based on Bi- and trimetallic Pt–Ru and Pt–Ru–Pd alloys prepared from coordination compounds

Bi- and trimetallic platinum–ruthenium and platinum–ruthenium–palladium catalysts with specified atomic ratios Pt: Ru = 1: 1 and Pt: Ru: Pd = 1: 1: 0.1, respectively, were synthesized from the coordination compounds of the metals deposited on highly dispersed carbon black. The catalysts were characterized by powder X-ray diffraction, electron dispersive analysis, and transmission electron microscopy. According to voltammetry data, the highest activity in the dimethyl ether (DME) electrooxidation is exhibited by the catalyst Pt_0.43Ru_0.47Pd_0.1/C; hence, it may be considered as a promising anode material for direct DME fuel cells.     

Geometrical structures of trimetallic Ag–Pd–Pt and Au–Pd–Pt clusters up to 147 atoms

Structural Chemistry - The core-shell morphologies of (PdPt)coreAgshell and (PdPt)coreAushell up to 147 atoms are investigated. The structural optimization of M–Pd–Pt (M = Ag or Au) is...     

Reusable resistive aptasensor for Pb(II) based on the Pb(II)-induced despiralization of a DNA duplex and formation of a G-quadruplex

The article describes a reusable biosensor for Pb(II) ions. A duplex DNA with a terminal amino group and containing a G-quadruplex (G4) aptamer was covalently conjugated to single walled carbon nanotubes on a field effect transistor (FET). The detection scheme is based on the despiralization of the DNA duplex because Pb(II) can induce the G4 aptamer to form a stabilizing G4/Pb(II) complex. This structural change affects the electrical conductivity of SWNTs which serves as the analytical signal. The biosensor was characterized via scanning electron microscopy, Raman, UV-vis, and voltage-current profiles. Under optimized conditions, the relative resistance at 0.02 V increases linearly with the logarithm of the Pb(II) concentration in the range from 1 ng·L^?1 to 100 μg·L^?1, and the limit of detection is 0.39 ng·L^?1. Compared to other sensors, this oner demonstrates superior simplicity, sensitivity, and selectivity even in mixtures of heavy metal ions. It was applied to the determination of Pb(II) in (spiked) water and soil samples and gave good results.

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Graphical abstract Schematic of the fabrication a biosensor for Pb(II). It is making use of an SWNT-based FET, G4-DNA and complementary DNA with an amino group. Pb(II) can despiralize the DNA duplex to form a G-quadruplex which affects the electrical conductivity of SWNTs. After each detection, the single complementary strand DNA can rebind the G4-DNA, which makes the biosensor reusable.

     

A novel colorimetric aptasensor for detection of chloramphenicol based on lanthanum ion–assisted gold nanoparticle aggregation and smartphone imaging

A label-free, rapid response colorimetric aptasensor for sensitive detection of chloramphenicol (CAP) was proposed, which was based on the strategy of ssDNA-modified gold nanoparticle (AuNP) aggregation assisted by lanthanum (La³⁺) ions. The AuNPs generated a color change that could be monitored in the red, green, and blue and analyzed by the smartphone imaging app. La³⁺, as a trigger agent, strongly combined with the phosphate groups of the surface of ssDNA-AuNPs probe, which helps create AuNP aggregation and the color change of AuNPs from red to blue. On the contrary, when mixing with CAP, the aptamer (Apt) bound to CAP to form a rigid structure of the Apt-CAP complex, and La³⁺ attached to the phosphate groups of the complex, which prevented the aptamer from binding to the surface of the AuNPs. As a result, the color of the AuNPs changed to violet-red. Finally, UV-vis absorption spectroscopy and the smartphone imaging app were employed to determine CAP with a lower detection limit of 7.65 nM and 5.88 nM, respectively. The proposed strategy featuring high selectivity and strong anti-interference ability for detection of CAP in practical samples was achieved. It is worth mentioning that the simple and portable colorimetric aptasensor will be used for facilitating on-site detection of food samples.

     

Preparation of polymeric modifier-attached graphene-supported bimetallic Pt–Pd nanocomposites,and their electrochemical properties as electro-catalysts

Graphene-supported bimetallic nanocomposites were synthesized by a modified sodium borohydride reduction method. Poly(diallyldimethylammonium chloride) (PDDA) was used as modifier for good dispersion and higher metal alloy content. The micro-structure and dispersive properties of the electro-catalysts were determined by X-ray diffraction, Fourier-transform-infrared spectroscopy, scanning electron microscopy, and transmission electron microscopy. The electrochemical properties of the Pt–Pd electro-catalysts were studied by cyclic voltammetry. This analysis confirmed that functional groups on the graphene oxide (GO) sheet were chemically bonded to the PDDA layer. The average particle diameter of Pt–Pd_{1 to 0.5}–PDDA–reduced graphene oxide (RGO) was found to be 2.4 ± 0.4 nm which is the smallest platinum metal particle size among Pt–Pd–PDDA–RGO electro-catalysts. The electrochemically active surface area was studied and the activity was found to be enhanced by use of the polymeric modifier.     

Preparation and electrochemical performance of graphene–Pt black nanocomposite for electrochemical methanol oxidation

This work reports the preparation, characterization, and electrocatalytic characteristics of a new metallic nanocatalyst. The catalyst, Pt black–graphene oxide (Pt-GO), was prepared by deposition of Pt black on the surface of graphene oxide nanosheet and characterized by transmission electron microscopy (TEM), energy-dispersive spectroscopy (EDS), and voltammetry. The Pt-graphene (Pt-GR) composite modified glassy carbon electrode (Pt-GR/GCE) was prepared with cyclic voltammetric scanning of Pt-GO/GCE in the potential range from ?1.5 to 0.2 in 0.1 M phosphate buffer solution at 50 mV·s^?1 for 5 cycles. The electrocatalytic properties of the Pt-GR/GCE for methanol (CH₃OH) oxidation have been investigated by cyclic voltammetry (CV); high electrocatalytic activity of the Pt-GR/GCE can be observed. This may be attributed to the high dispersion of Pt catalyst and the particular properties of GR support. The long-term stability of Pt-GR composite was investigated in 0.05 M CH₃OH in 0.1 M H₂SO₄ solution. It can be observed that the peak current decreases gradually with the successive scans. The loss may result from the consumption of methanol during the CV scan. It also may be due to the poisoning organic compounds. The results imply that the Pt-GR composite has good potential applications in fuel cells.     

Metalizing carbon nanotubes with Pd–Pt core–shell nanowires enhances electrocatalytic activity and stability in the oxygen reduction reaction

We describe an electrostatically induced self-assembly method to prepare ultrathin Pd nanowires (NWs) surrounding individual multiwalled carbon nanotubes, i.e., Pd_NW/MWNTs, that are noticeable for improving performance in the oxygen reduction reaction (ORR) of their supported Pt_ML electrocatalyst. The carbonaceous by-products in MWNTs, rather than the nanotubes themselves, are modified with the oxygenated terminals to allow the negatively charged and hydrophilic surface while retaining the intrinsic nature of the MWNTs. Encompassing the nanotubes' length are 2-nm-thick Pd NWs that are closely packed and homogeneously dispersed due to the unique processes for preparing Pd_NW/MWNTs and its components. Although the crystal lattice of the Pd NWs expands somewhat, which should cause an unfavorable interaction with supported Pt_ML, this adverse effect is counterweighed by the shape-determined features of Pd NWs, including their high specific surface area, excellent contiguousness, and low-energy atomic configuration. Consequently, these distinct chemical and physical properties substantially expedite the desorption of the intermediates to refresh the active centers during the reduction of oxygen with the Pt_ML electrocatalyst while ensuring a desirable electron transfer rate, so improving the overall ORR kinetics. Indeed, Pt_ML/Pd_NW/MWNTs exhibits the Pt mass and specific activities of 1.45 A/mg_Pt and 0.65 mA/cm² _Pt, respectively, each of which are several times those of the Pt/C and even higher than those of the Pt_ML supported on Pd nanoparticles. These high activities remained over a long-term stability test using the latest US Department of Energy-established protocol.     

A ratiometric electrochemical biosensor for sensitive detection of Hg based on thymine–Hg–thymine structure

In this paper, a simple, selective and reusable electrochemical biosensor for the sensitive detection of mercury ions (Hg²⁺) has been developed based on thymine (T)-rich stem–loop (hairpin) DNA probe and a dual-signaling electrochemical ratiometric strategy. The assay strategy includes both “signal-on” and “signal-off” elements. The thiolated methylene blue (MB)-modified T-rich hairpin DNA capture probe (MB-P) firstly self-assembled on the gold electrode surface via Au–S bond. In the presence of Hg²⁺, the ferrocene (Fc)-labeled T-rich DNA probe (Fc-P) hybridized with MB-P via the Hg²⁺-mediated coordination of T–Hg²⁺–T base pairs. As a result, the hairpin MB-P was opened, the MB tags were away from the gold electrode surface and the Fc tags closed to the gold electrode surface. These conformation changes led to the decrease of the oxidation peak current of MB (I_MB), accompanied with the increase of that of Fc (I_Fc). The logarithmic value of I_Fc/I_MB is linear with the logarithm of Hg²⁺ concentration in the range from 0.5 nM to 5000 nM, and the detection limit of 0.08 nM is much lower than 10 nM (the US Environmental Protection Agency (EPA) limit of Hg²⁺ in drinking water). What is more, the developed DNA-based electrochemical biosensor could be regenerated by adding cysteine and Mg²⁺. This strategy provides a simple and rapid approach for the detection of Hg²⁺, and has promising application in the detection of Hg²⁺ in real environmental samples.     

Electrochemical determination of the surface composition of Pd–Pt core–shell nanoparticles

Different amounts of Pt atoms were deposited onto the surface of Pd nanoparticles supported on carbon black by hydroquinone reduction method in anhydrous ethanol. Here, we surveyed electrochemical probing of surface compositions of Pd–Pt surface alloys. They were calculated from hydrogen desorption, carbon monoxide adlayer oxidation, and reduced carbon dioxide oxidation charges. The surface composition of Pt drastically increased up to Pt[0.3]/Pd/C (23.1 at.% of Pt) and then approached that of pure Pt with the moderate rate of increase.     

Self-assembled (pseudo)rotaxane and polyrotaxane through host–guest chemistry based on the cucurbituril family

Cucurbit[n]uril and its derivatives, a new family of macrocyclic hosts comprising n glycoluril units, have gained much attention for their exceptional application in many fields. In this review, we introduced the cucurbituril family and the development of its derivatives, which can be used in the molecular recognition and self-assembled materials such as pseudorotaxane, polyrotaxane. Moreover, cucurbituril provides the possibility to design stimulus–response devices and imitate the life secret at molecule level, such as the molecular devices controlled by pH, photochemistry, thermal and so on.     

A novel electrochemical DNA biosensor construction based on layered CuS–graphene composite and Au nanoparticles

A novel CuS–graphene (CuS-Gr) composite was synthesized to achieve excellent electrochemical properties for application as a DNA electrochemical biosensor. CuS-Gr composite was prepared by a hydrothermal method, in which two-dimensional graphene served as a two-dimensional conductive skeleton to support CuS nanoparticles. A sensitive electrochemical DNA biosensor was fabricated by immobilizing single-stranded DNA (ss-DNA) labeled at the 5′ end using 6-mercapto-1-hexane (HS-ssDNA) on the surface of Au nanoparticles (AuNPs) to form ssDNA-S–AuNPs/CuS-Gr, and hybridization sensing was done in phosphate buffer. Cyclic voltammetry and electrochemical impedance spectroscopy were performed for the characterization of the modified electrodes. Differential pulse voltammetry was applied to monitor the DNA hybridization using an [Fe(CN)₆]^3?/4? solution as a probe. Under optimum conditions, the biosensor developed exhibited a good linear relationship between the current and the logarithm of the target DNA concentration ranging from 0.001 to 1 nM, with a low detection limit of 0.1 pM (3σ/S). The biosensor exhibited high selectivity to differentiate one-base-mismatched DNA and three-base-mismatched DNA. The results indicated that the sensing platform based on CuS-Gr provides a stable and conductive interface for electrochemical detection of DNA hybridization, and could easily be extended to the detection of other nucleic acids. Graphical abstracts

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