Density Functional Theory Study of the Interaction between Thymine and Luteolin

The density function B3LYP method has been used to optimize the geometries of the luteolin, thymine and luteolin‐thymine complexes at 6‐31+G?? basis. The vibrational frequencies have been studied at the same level to analyze these seventeen complexes, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of the complexes corrected by basis set superposition error are between ?93.00–?76.69 kJ/mol. The calculating results indicate that strong hydrogen bonding interactions have been found in the luteolin‐thymine complexes.     

Density Functional Theory Study of the Interaction between Guanine and Catechin

The interacting patterns and mechanism of the catechin and guanine have been investigated with the density functional theory B3LYP method by 6‐31G* basis set. Fourteen stable structures for the catechin‐guanine complexes have been found which form two hydrogen bonds at least. The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions. At the same time, the number and strength of hydrogen bond play a co‐determinant parts in the stability of the complexes which can form two or more hydrogen bonds. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been adopted to investigate the hydrogen bonds involved in all systems. The interaction energies of all complexes have been corrected for basis set superposition error (BSSE), ranging from ?38.86 to ?14.56 kJ/mol. The results showed that the hydrogen bonding contributes to the interaction energies dominantly. The corresponding bonds stretching motions in all complexes are red‐shifted relative to that of the monomer, which is in agreement with experimental results.     

纳米二氧化硅物理吸附乙醇的密度泛函研究

利用密度泛函理论, 采用周期性边界条件及簇方法研究了无定型纳米二氧化硅的表面结构以及其对小分子吸附物乙醇的吸附性质. 计算结果表明, 小簇模型在研究特定种类的吸附方面具有优势, 而周期性切片模型更能真实地反映纳米二氧化硅的表面环境; 乙醇在二氧化硅表面的吸附主要依赖于氢键作用, 并倾向于充当氢键受体的角色.     

杯[4]二吡咯与卤素阴离子相互作用的密度泛函理论研究

采用密度泛函B3LYP方法, 在6\|31G*/LANL2DZ水平上对杯[4]二吡咯主体分子及其与卤素阴离子形成的复合物进行研究.  结果表明, 杯[4]二吡咯可与卤素阴离子相互作用形成具有较高对称性的复合物, 其8个吡咯NH基团上的H原子均可以和卤素阴离子形成氢键; 杯[4]二吡咯与卤素阴离子结合能力大小的顺序为F- >Cl- >Br- > I-.  振动光谱、 电荷分布以及前线轨道计算结果表明, 杯[4]二吡咯与卤素阴离子相互作用的本质为氢键, 经BSSE校正的结合能与电荷转移程度、 N-H键键长和N-H伸缩振动频率变化呈线性关系.      

N—O键解离焓的密度泛函理论研究

在高精度计算方法G3和G3B3的基础上,比较了密度泛函理论(DFT)十几种方法对N—O键解离焓(BDE)相对于实验值的计算精度,发现用B3P86方法计算15种化合物N—O键的BDE,均方根误差最小,仅为6.36kJ·mol-1,计算值与实验值的线性相关系数为0.991.在此基础上,用该方法分别计算了非芳香化合物及芳香化合物的N—O键BDE.通过自然键轨道分析,发现部分N—O键的BDE与N—O键的键长、原子电荷密度及键级之间存在定量关系.此外,在B3P86方法的基础上预测了几种典型的杂环芳香化合物N—O键BDE值.     

A Comparative Study of Hydrogen Bonding Using Density Functional Theory

The hydrogen‐bond energies of water dimer and water‐formaldehyde complexes have been studied using density functional theory (DFT). Basis sets up to aug‐cc‐pVXZ (X=D, T, Q) were used. It was found that counterpoise corrected binding energies using the aug‐cc‐pVDZ basis set are very close to those predicted with the aug‐cc‐pVQZ set. Comparative studies using various DFT functionals on these two systems show that results from B3LYP, mPW1PW91 and PW91PW91 functionals are in better agreements with those predicted using high‐level ab initio methods. These functionals were applied to the study of hydrogen bonding between guanine (G) and cytosine (C), and between adenine (A) and thy mine (T) base pairs. With the aug‐cc‐pVDZ basis set, the predicted binding energies of base pairs are in good agreement with the most elaborate ab initio results.     

十二烷基苯磺酸钠和无机阳离子之间相互作用的密度泛函理论研究

研究阴离子表面活性剂和阳离子之间的相互作用对于理解阴离子表面活性剂的沉淀和溶解现象具有十分重要的理论和实际意义,但关于两者相互作用的相关理论模型鲜有报道。本文采用密度泛函理论(DFT)方法研究了十二烷基苯磺酸根阴离子(DBS^-)与阳离子(Na⁺, Mg²⁺和Ca²⁺)在溶液内及气/液界面处的相互作用。在溶液内,在两种不同溶液环境中(水相和正十二烷)构建DBS^-/阳离子相互作用模型,并对其进行优化。结果表明, DBS^-能够与阳离子以双齿结构稳定结合。DBS^-与阳离子的结合能不仅取决于参与的无机盐离子种类,还与溶剂的性质有关。在气/液界面处, DBS^-与六个水分子相互作用形成的水合物DBS^-·6H₂O最为稳定。但是,无机盐离子的引入会严重破坏DBS^-·6H₂O水合物的水化层结构。本文定义无量纲参量def用来对水化层结构的变化程度进行评价。无机盐离子对DBS^-·6H₂O水化层结构破坏程度的顺序为:Ca²⁺ > Mg²⁺ >Na⁺。电荷分析结果表明水化层在十二烷基苯磺酸钠(SDBS)头基与阳离子的相互作用中起了重要作用。     

氢原子在Be(0001)表面吸附的密度泛函理论研究

采用第一性原理的密度泛函理论研究单个氢原子和多个氢原子在Be(0001)表面吸附性质.给出了氢吸附Be(0001)薄膜表面的原子结构、吸附能、饱和度、功函数、偶极修正等特性参数.同时也讨论了相关吸附性质与氢原子覆盖度(0.06-1.33ML)的关系.计算结果表明:氢原子的吸附位置与覆盖度之间有强烈的依赖关系,覆盖度低于0.67ML时,氢原子能量上易于占据fcc或hcp的中空位置;覆盖度为0.78ML时,中空位与桥位为氢原子的最佳吸附位;覆盖度在0.89到1.00ML时,桥位是氢原子吸附能量最有利的位置;以上覆盖度中Be(0001)表面最外层铍原子的结构均没有发生明显变化.当覆盖度为1.11-1.33ML,高覆盖度下Be(0001)表面的最外层铍原子部分发生膨胀,近邻氢原子渗入到铍表面次层,氢原子易于占据在hcp和桥位.吸附结构中的氢原子比氢分子中的原子稳定.当覆盖度大1.33ML时,计算结果没有发现相对于氢分子更稳定的吸氢结构.同时从分析偶极修正和氢原子吸附垂直高度随覆盖度的变化关系判断氢覆盖度为1.33ML时,在Be(0001)表面吸附达到饱和.     

氢原子在Pt及Pt系双金属催化表面吸附的密度泛函理论研究

采用密度泛函理论(dFT)考察了Pt(100)、(110)、(111)三种表面氢原子的吸附行为, 计算了覆盖度为0.25 ML时氢原子在Pt 三种表面和M-Pt(111)双金属(M=Al, Fe, Co, Ni, Cu, Pd)上的最稳定吸附位、表面能以及吸附前后金属表面原子层间弛豫情况. 分析了氢原子在不同双金属表面吸附前后的局域态密度变化以及双金属表面d 带中心偏离费米能级的程度并与氢吸附能进行了关联. 计算结果表明, 在Pt(100), Pt(110)和Pt(111)表面, 氢原子的稳定吸附位分别为桥位、短桥位和fcc 穴位. 三种表面中以Pt(111)的表面能最低, 结构最稳定. 氢原子在不同M-Pt(111)双金属表面上的最稳定吸附位均为fcc 穴位, 其中在Ni-Pt 双金属表面的吸附能最低, Co-Pt 次之. 表明氢原子在Ni-Pt 和Co-Pt 双金属表面的吸附最稳定. 通过对氢原子在M-Pt(111)双金属表面吸附前后的局域态密度变化的分析, 验证了氢原子吸附能计算结果的准确性. 掺杂金属Ni、Co、Fe 的3d-Pt(111)双金属表面在吸附氢原子后发生弛豫, 第一层和第二层金属原子均不同程度地向外膨胀. 此外, 3d金属的掺入使得其对应的M-Pt(111)双金属表面d带中心与Pt 相比更靠近费米能级, 吸附氢原子能力增强, 表明3d-Pt系双金属表面有可能比Pt具有更好的脱氢活性.     

Theoretical Investigation on Interaction between Guanine and Luteolin

The interacting patterns of the luteolin and guanine have been investigated by using the density functional theory B3LYP method with 6-31＋G＊ basis set. Eighteen stable structures for the luteolin-guanine complexes have been found respectively. The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions. Meanwhile, both the number and strength of hydrogen bond play important roles in determining the stability of the complexes which can form two or more hydrogen bonds. Theories of atoms in molecules and natural bond orbital have also been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes which were corrected by basis set superposition error are 6.04-56.94 kJ/mol. The calculation results indicate that there are strong hydrogen bonding interactions in the luteolin-guanine complexes. We compared the interaction between luteolin and four bases of DNA, and found luteolin-thymine was the strongest and luteolin-adenine was the weakest. The interaction between luteolin and DNA bases are all stronger than luteolin-water.     

元素电负性和硬度的密度泛函理论研究

应用密度泛函理论的DFT LDA、DFT LDA/NL和改进的Slater过渡态方法,把元素的电离能和电子亲合能的计算扩展到周期表的103种元素.并用有限差分方法计算了这103种元素的电负性和硬度.计算中考虑了相对论效应.计算结果比以前Robles等用密度泛函理论的XGL和Xα近似的交换相关泛函的计算结果有所改进,更接近实验值.     

Density Functional Theory Study on Hydrogen Bonding Interaction of Catechin-(H2O)n

Density functional theory B3LYP method with 6‐31G* basis set has been used to optimize the geometries of the catechin, water and catechin‐(H₂O)_n complexes. The vibrational frequencies have been studied at the same level to analyze these complexes. Six and eleven stable structures for the catechin‐H₂O and catechin‐(H₂O)₂ have been found, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are from ?13.27 to ?83.56 kJ/mol. All calculations also indicate that there are strong hydrogen‐bonding interactions in catechin‐water complexes. The strong hydrogen‐bonding contributes to the interaction energies dominantly. The O–H stretching motions in all the complexes are red‐shifted relative to that of the monomer.     

镱硫属化合物的密度泛函理论研究

用密度泛函理论(DFT)研究镱硫属化合物的电子结构和性质,通过与实验比较考察了现有的几种近似密度泛函公式对镧系元素化合物的适用程度和相对论效应的影响.结果表明,用DFT计算的YbO键长对实验值的偏差约为0.002nm;但得到的键能即使在考虑梯度校正和相对论效应之后,仍比实验值高,在定域密度近似基础上引入交换梯度校正使键能计算值减小,其中PW86x使键能计算值减小稍多些,结果更接近实验值;相关梯度校正使键能计算值升高.相对论效应使键长缩短0.004～0.006nm,键能减小约0.5eV.计算结果的分析表明,Yb的5d轨道和配体的np轨道间形成σ键和π键.在所研究的分子体系中,配体原子从O到Te、Yb原子的5d轨道布后数依次减少,同键能减弱的顺序一致.相对论效应使键能减小的主要原因是在成键过程中发生了Yb的6s电子向5d轨道的转移,而相对论效应使该过程能量增加.偶极矩和电荷分布的计算表明,Yb-L键以共价性为主,相对论效应使共价性成份增加.     

Density Functional Theory Study on Spin States of LaCoO3 at Room Temperature

The electronic structure of the perovskite LaCoO3 at room temperature structure （293 K） was calculated by using PBE, PBE＋U and HSE. Different spin configurations have been considered. Our calculations showed that the choice of the Hubbard U parameter in DFT＋U and mixing factor α in HSE significantly influenced the band gap as well as relative energies. For the spin exited states, the optimal value for U and α were 3.0 eV and 0.05, respectively. Our calculation also emphasized that when U〉5.0 eV, PBE＋U would lead to unreasonable electronic structure and energy order.     

肾上腺素与二甲亚砜氢键作用的理论研究

The hydrogen bond is one of the most important intermolecular interactions playing an important role in intermolecular recognition processes essential to most biological systems. Adrenaline is an important catecholamine neurotransmitter in the mammalian central nervous system. Dimethyl sulphoxide can carry with it drugs across membranes. The geometries of adrenaline and six stable 1 : 1 complexes formed between adrenaline and dimethyl sulphoxide were optimized by Berny method at PM3 level and thus were optimized by density functional theory（B3LYP method）at the 6-31G,6-31G*,and 6-31+G* level respectively to obtain accurate structures. Single-point energies of all optimized molecular geometries were calculated to discuss the energies and structural parameters between reactants and products. All the binding energies have been corrected by the zero point vibrational energies（ZPVE）at varied basis set levels from 6-31G to 6-31 + G*. The results indicated that stronger hydrogen-bonded complexes were formed by molecular interaction between adrenaline and dimethyl sulphoxide. The calculation results can be better used to explain some experimental phenomena.     

丙酮酸分子结构与振动光谱的密度泛函理论研究

用密度泛函方法BLYP、B3LYP和从头算Hartree-Fock(HF)方法在6-31G*基组水平上对丙酮酸分子的几何结构（甲基的重叠式和交错式两种构象）和振动光谱分别进行了优化和计算,并给出了各种频率所对应的红外强度及拉曼活性,对光谱进行了指认。结果表明：在丙酮酸分子的两种构象中,重叠式比较稳定*B3LYP计算得到的构型参数与实验结果比较一致;在振动频率的计算中,BLYP未标度力场所计算的非CH3伸缩振动基频预测值和实验值的平均绝对偏差为10.4cm-1;而HF标度力场的平均绝对偏差为17.9cm-1。说明两者的结果与实验观测频率比较吻合,但B3LYP的频率计算值偏差（38.3cm-1）较大。根据振动频率的势能分布和红外光谱强度对此分子的振动基频进行了理论归属。     

单嘧磺隆除草剂的晶体构象-活性构象转换的密度泛函理论研究

应用密度泛函理论在B3LYP/6-31G(d)水平上对新型除草剂单嘧磺隆绕脲桥部分两个C—N键的内旋转势能面进行计算, 然后对势能面上的驻点进行构型优化和过渡态搜索, 得到单嘧磺隆4种稳定构象和构象转换过程所涉及的8个过渡态结构. 研究结果表明, 单嘧磺隆晶体构象-活性构象转换过程中涉及4种稳定构象和8条转换途径, 脲桥部分NH基团与嘧啶环上N原子所形成的分子内氢键对于构象的稳定性及转换过程起着十分重要的作用. 应用极化连续介质溶剂模型(PCM)在B3LYP/6-31＋＋G(d, p)水平下进行溶剂化效应计算, 结果表明单嘧磺隆从晶体构象转换成活性构象主要是在水相中进行的.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP／6—31 G**水平上对1，2，4-三氮杂苯-(H2O)n(n=1，2，3)氢键复合物的基态进行了结构优化和能量计算，结果表明复合物之间存在较强的氢键作用，所有稳定复合物结构中形成一个N…H--O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定．同时，用含时密度泛函理论方法(TD—DPT)在TD—B3LYP／6—31 G**水平上计算了1,2，4-三氮杂苯单体及其氢键复合物的单重态第-1(n，π*)垂直激发能．     

NH3在硼纳米管表面吸附的密度泛函理论研究

利用密度泛函理论研究了NH₃在完整和含有缺陷的硼纳米管上的吸附行为以及相关电子性质. 计算结果表明, 对于α硼纳米管, 在不同的直径和手性条件下, NH₃均倾向于吸附在配位数为6的顶位上. 电子结构计算结果表明, NH₃能够吸附在纳米管表面主要是由于N和B原子产生了较强的相互作用. 表明硼纳米管是一种潜在的NH₃气气敏材料.     

Density Functional Theory Study on Organic Dye Sensitizers Containing Bis-dimethylfluorenyl Amino Benzofuran

The geometries, electronic structures, polarizabilities and hyperpolarizabilities, as well as the UV-Vis spectra of the two organic dye sensitizers containing bis-dimethylfluorenyl amino benzofuran were studied via density functional theory （DFT） and time-dependent DFT. The features of electronic absorption spectra were assigned on account of the agreement between the experiment and the calculations. The absorption bands in visible region are related to photoinduced electron transfer processes, and the dimethylfluorenyl amino benzo[b]furan groups are major chromophore that contributed to the sensitization of photo-to-current conversion. The role of vinylene group in geometry, electronic structure and spectra property is analyzed according to the comparative study of the dyes.