An ab initio study of the CH2O adsorption on the MgO (100) surface. Effects of replacing the active Mg ion by different metallic cations

A theoretical analysis of the interaction between formaldehyde, CH₂O, and the MgO (100) surface is reported. Ab initio Hartree-Fock calculations are carried out using an embedded cluster approach in which the environment is described by both total ion potentials and point charges. The cluster selected to describe the CH₂O-surface interaction is CH₂O[MgO₅]⁸⁻, in which the formaldehyde oxygen is coordinated to the Mg²⁺ ion. The effect of the addition of metallic cations to the catalyst is analysed by replacing the cluster Mg²⁺ ion by Na⁺, Al³⁺, Sc³⁺ and Ti⁴⁺ so as to modify the Lewis acid properties of the surface. The different contributions to the adsorbate-surface interaction are analysed, and the theoretical vibrational frequencies are discussed.     

苯砜基环烷酸酯类化合物的分子结构与色谱保留的定量关系

根据线性溶解能理论，导出一种理论线性溶解相关模型，应用该模型及量子化学ＡＭＩ算法计算的分子结构参数，得出苯砜基环烷酸酯类化合物的分子结构与色谱保留定量关系方程，这个方程可以应用于同类化合物在同样色谱条件下保留行为的预测。研究表明，该类化合物的容量因子随着分子平均极化率的增大而增大，随着偶极矩和的分子中与硫原子相键合的氧原子的净电荷的增大而减小。     

Ab initio study on the adsorption and oxidation of HCHO with Ag2 cluster

We present an ab initio study on the adsorption and oxidation of HCHO on the Ag₂ dimer. HCHO is found to weakly adsorb on the neutral Ag₂ cluster and the adsorption energy increases when the Ag₂ cluster is positively charged. The adsorption of HCHO on Ag₂ is promoted by pre-adsorbed OH species while coadsorbed H has no effect. The formation of η²-methylendioxy is inhibited if the Ag₂ cluster is positively and properly charged, which enhance the selectivity of the partial oxidation of methanol. These results provide insight into the reaction mechanism of HCHO on silver surfaces and may guide the design of novel catalysts.     

结合三维静电势参数研究二取代苯的定量结构－疏水性关系

对含有常见取代基的92个二取代苯化合物进行了结构优化和静电势及其导出参数的计算,运用多元线性回归方法对化合物的疏水常数与分子的结构参数进行了关联.结果表明,分子表面负静电势的加和ΣV－S、分子空间内最负的静电势Vmin、表面最大静电势Vs,max以及分子体积V、极性表面积APS和分子的偶极密度μ/V这六个参数,可以很好地用于表达这些化合物疏水性与分子结构间的定量关系,而不用具体考虑分子中极性基团间的相互作用.用建立起来的QSPR(quantitative structure-property relationship)关系式对111个类似化合物的疏水性进行了预测,获得了满意的结果.     

H2O在Cu(100)表面吸附的从头算研究

用量子化学从头计算方法,以原子簇Cu₅为模拟表面,研究了水在Cu(100)面上不同吸附位的吸附情况,结果表明:水分子通过氧原子与表面成键,顶位是其最佳吸附位,吸附能约为70kJ/mol,平衡距离为0.213nm,氢原子远离表面.在氧原子不加极化函数时,水分子的二次轴垂直于表面时能量最低,但倾斜至50°所需能量仅在10kJ/mol以内.当考虑O原子d轨道的影响时,水分子倾斜时能量较低,得到了与实验相符的吸附构型.另外还研究了表面电荷对吸附体系的影响,结果表明:表面带正电荷时,水与表面间的相互作用增强,水上所转移电荷增多,Cu-O间平衡距离减小;表面带负电荷时,情况与之相反,且氢原子靠近表面时,势能曲线有最低点.     

Chemisorption of HSi(OH)3 on silica surfaces: an ab initio periodic study

The study of the grafting of trialkoxysilane R′Si(OR)₃ molecules on amorphous silica has been undertaken at the Hartree–Fock level using a biperiodic model for the surface. Different types of slab cut out from the model system Edingtonite (a tetragonal silica structure with five SiO₂ groups per unit cell) have been used to simulate isolated and interacting silanol sites at the amorphous silica surface, while only the simple case of HSi(OH)₃ has been considered for the interacting molecule. In a first step, for each type of surface the geometrical parameters have been optimised and the surface formation energy determined. The geometrical structure of the grafted molecule is compared with that of the isolated one. The geometrical strains of the surfaces with either isolated or interacting silanols are also compared before and after the grafting reactions. The calculated values of the chemisorption energies show that the grafting process is favored on isolated silanols only if correlation effects are included.     

Microwave spectroscopic and ab initio studies of pyrolysis products of 2-nitrosopropene (syn form) and its pyrolysis mechanism

The pyrolysis products of CH₂=C(CH₃)---NO (syn form) have been determined by microwave spectroscopy. The pyrolysis products of CH₂=C(CH₃)---NO (syn form) and its ¹⁵N isotopic species were found to be CH₂=O, CH₃CN, and CH₃C¹⁵N. The produce of formaldehyde and methyl cyanide suggests that the C=C and N=O double bonds of CH₂=C(CH₃)---N=O (syn form) were broken. To explain the generation of the two molecules, a four-membered ring molecule (9) as an intermediate, is proposed. The four-membered ring molecule as an intermediate is also supported by ab initio MO calculation. Applying the pyrolysis mechanism obtained for 2-nitrosopropene (syn form) to that of 1,1,2-trichloronitrosoethane, one of its complicated pyrolysis mechanisms was explained. The rotational constants and geometrical parameters of two intermediates, 9 and CH₂=CCl---NO (13), were obtained by ab initio MO calculation (MP2/6-31G**) to predict their microwave spectra.     

Molecular structure of the azidoalane [Me2N(CH2)3]AltBu(N3). X-ray structural determination and ab initio calculations

A single crystal of the azidoalane [Me₂N(CH₂)₃]AltBu(N₃) (1a), grown in a capillary using a miniature zone melting procedure, was investigated by X-ray analysis. Compound 1a (C₉H₂₁AlN₄) is a monomeric species in the solid state, which crystallizes in the monoclinic space group P2₁ with a=6.8560(14) Å, b=12.251(3) Å, c=7.786(2) Å, β=108.51(3)° and Z=2. The results of the X-ray structural determination are compared with the calculated structure of 1a (HF/6-31G(d) and B3LYP/6-31G(d) level of theory). Whereas the overall agreement between the measured and calculated structure is good, the Al–N donor-bond length differs by 11 and 12 pm at the HF and B3LYP level, respectively. To evaluate the effects of a polar environment on the molecular structure of 1a self-consistent reaction field (SCRF) calculations at the HF and B3LYP level with the 6-31G(d) basis set were performed.     

F-(H2O)n(n=1～4)体系的结构、偶极矩、极化率和一阶超极化率的从头计算

用MP2方法得到F^-(H₂O)_n(n=1～4)体系的优化几何结构.依据优化结构计算偶极矩μ₀、极化率α₀、各向异性极化率Δα和一阶超极化率β₀,研究了基组效应.讨论了溶剂水分子数、溶剂水分子排布及溶剂层数变化诸因素对体系超极化率等性质的影响.     

An ab initio and matrix isolation infrared study of the 1:1 C2H2–CHCl3 adduct

The details of weak C–Hπ interactions that control several inter and intramolecular structures have been studied experimentally and theoretically for the 1:1 C₂H₂–CHCl₃ adduct. The adduct was generated by depositing acetylene and chloroform in an argon matrix and a 1:1 complex of these species was identified using infrared spectroscopy. Formation of the adduct was evidenced by shifts in the vibrational frequencies compared to C₂H₂ and CHCl₃ species. The molecular structure, vibrational frequencies and stabilization energies of the complex were predicted at the MP2/6-311+G(d,p) and B3LYP/6-311+G(d,p) levels. Both the computational and experimental data indicate that the C₂H₂–CHCl₃ complex has a weak hydrogen bond involving a C–Hπ interaction, where the C₂H₂ acts as a proton acceptor and the CHCl₃ as the proton donor. In addition, there also appears to be a secondary interaction between one of the chlorine atoms of CHCl₃ and a hydrogen in C₂H₂. The combination of the C–Hπ interaction and the secondary ClH interaction determines the structure and the energetics of the C₂H₂–CHCl₃ complex. In addition to the vibrational assignments for the C₂H₂–CHCl₃ complex we have also observed and assigned features owing to the proton accepting C₂H₂ submolecule in the acetylene dimer.     

An ab initio (RHF) and DFT-B3LYP level spectroscopic studies of BrCCCN and the analysis of atomic polar tensors

Conventional ab initio (RHF) and DFT-B3LYP level calculations in conjunction with a variety of basis sets have been used to investigate the variations in the bond lengths, dipole moment, rotational constant, quadruple coupling constants, infrared frequencies, IR intensities and rotational invariants of BrCCCN. Satisfactory agreements between the B3LYP and experimental values were found for bond lengths, rotational constant, dipole moment and all other parameters. All the calculated bond lengths are in good agreement with each other for a given method having the average standard deviations varying between ±0.005 Å at the B3LYP level. Harmonic vibrational frequencies obtained from the B3LYP calculations show good agreement with the available experimental data. The global atomic polar tensor charges, used for interpreting the IR intensities, of all the atoms of BrCCCN have been calculated at the RHF and B3LYP levels in conjunction with the 6-311g(d) and 6-311++g(d,p) basis sets. Linear regression analysis between calculated and experimental infrared frequencies as well as between IR intensities in a series of 15 similar type of nitrile compounds have been achieved at the B3LYP/6-311++g(d,p) level and gives linear regression coefficients 0.983 and 0.970 respectively. Finally, a number of linear relations were found between r(CN) bond lengths and GAPT charges, and GAPT charges on CHELPG and MK charges at the nitrogen atom for these molecules and proved to be producing satisfactory results at the B3LYP/6-311++g(d,p) level of calculations.     

Adsorption of water on sodium chloride surfaces: electrostatics – guided ab initio studies

Water adsorption is studied on medium-sized clusters of sodium chloride representing (100) and (110) surfaces at the ab initio level. Topographical features of molecular electrostatic potential (MESP) have been employed for predicting the potent sites for binding of one to four water molecules on these surfaces. Such guess geometries are initially optimized using an electrostatics-based model, electrostatic potential for intermolecular complexation (EPIC) and further at the Hartree–Fock and B3LYP/6-31G(d, p) levels. The corresponding interaction energies are examined for assessing co-operative binding effects. The geometry and interaction energy of four water molecules adsorbed on NaCl(100) clearly brings out the co-operative binding among the water molecules. Further, water binding to (110) surface is stronger than that with (100) surface. This is also in confirmation with the electrostatic properties of (110) surface. Many-body decomposition analysis brings out the stronger interaction between NaCl clusters with water molecules vis-a-vis water–water interaction.     

A bonding study of cyclopentene (c-C5H8) adsorption on Ni(1 1 1) surface

The adsorption of cyclopentene (c-C₅H₈) on Ni(1 1 1) was studied using DFT and semiempirical calculations. Preferred site and geometry calculations were carried out considering a Ni(1 1 1) surface and a unit cell of 64-atoms. The tetrahedral threefold hollow position was identified as the most favorable site, with a surface-molecule minimum distance of 1.83 Å. A bending structure is adopted when the molecule is adsorbed where the carbon atoms of the double bond are closer to the surface forming an angle of 160° among non-equivalents carbon atoms. The metal surface was represented by a two-dimensional slab with an overlayer of c-C₅H₈/Ni of 1/9 ratio. We also computed the density of states (DOS) and the crystal orbital overlap populations (COOP) corresponding to CC, CNi, CH, and NiNi bonds. We found that both NiNi bonds interacting with the ring, and the CC bond are weakened after adsorption, this last bond is linked significantly to the surface. The hydrogen atoms belonging to the saturated carbon atoms also participate in the adsorbate–surface bonding. The main interactions include the 4s, 3p_z and 5d_z² bands of nickel and 2p_z bands of the carbon atoms of the double bond.     

A comparative study by AM1, PM3 and ab initio HF/3-21G methods on the structure and reactivity of monosubstituted carbanion 1,2,4-triazolium ylides

A full conformational analysis of six 1,2,4-monosubstituted carbanion 1,2,4-triazolium ylides 4 a–f was performed using AM1, PM3 and HF/3-21G methods. The C-type conformers were found as the most stable structures by these different methods. This study also includes a qualitative estimation of the chemical behavior of triazolium ylides 4 a–f as nucleophilic agents on the level of ylide carbon atoms. The ab initio 3-21G method seems to be the most suitable in the characterization of these molecular systems.     

Structures and conformations of trifluoromethanesulfonic anhydride, (CF3SO2)2O, and bis(trifluoromethylsulfonyl)difluoromethane, (CF3SO2)2CF2

The geometric structures and conformational properties of trifluoromethanesulfonic anhydride, (CF₃SO₂)₂O, and bis(trifluoromethylsulfonyl)difluoromethane, (CF₃SO₂)₂CF₂ have been studied by gas electron diffraction (GED) and ab initio calculations (HF/3–21G*). The calculations predict for both systems two stable conformers with C₂ symmetry and one with C₁ symmetry. In both compounds structures with C₂ symmetry and dihedral angles SOSC ≈ 100° ((CF₃SO₂)₂O) and SCSC≈ 150° ((CF₃SO₂)₂CF₂ are lowest in energy. According to the GED analyses the dominant conformer of (CF₃SO₂)₂O₂ possesses C₂ symmetry with SOSC dihedral angles of 99.1(14)°. The presence of up to 30% of the two other conformers cannot be excluded; for (CF₃SO₂)₂CF₂ only one conformer with C₂ symmetry and SCSC dihedral angles of 143(2)° is observed. A complete set of geometric parameters is given.     

Structures and conformations of trifluoromethanesulfonic anhydride, (CF3SO2)2O, and bis(trifluoromethylsulfonyl)difluoromethane, (CF3SO2)2CF2

The geometric structures and conformational properties of trifluoromethanesulfonic anhydride, (CF₃SO₂)₂O, and bis(trifluoromethylsulfonyl)difluoromethane, (CF₃SO₂)₂CF₂ have been studied by gas electron diffraction (GED) and ab initio calculations (HF/3–21G*). The calculations predict for both systems two stable conformers with C₂ symmetry and one with C₁ symmetry. In both compounds structures with C₂ symmetry and dihedral angles SOSC ≈ 100° ((CF₃SO₂)₂O) and SCSC ≈ 150° ((CF₃SO₂)₂CF₂) are lowest in energy. According to the GED analyses the dominant conformer of (CF₃SO₂)₂O possesses C₂ symmetry with SOSC dihedral angles of 99.1(14)°. The presence of up to 30% of the two other conformers cannot be excluded; for (CF₃SO₂)₂CF₂ only one conformer with C₂ symmetry and SCSC dihedral angles of 143(2)° is observed. A complete set of geometric parameters is given.     

Ab initio molecular orbital study of potential energy surface for the H2NO(B1)→NO(Π)+H2 reaction

The mechanism of the H₂NO(²B₁)→NO(²Π)+H₂ reaction has been examined using ab initio molecular orbital methods. Ground-state and first-excited-state potential surfaces were plotted at the FOCI/cc-pVTZ level of theory as functions of two appropriate internal degrees of freedom. A conical intersection was found on the C_s pathway that is symmetric with respect to the plane perpendicular to the molecular plane of C_2v H₂NO(²B₁). It is therefore considered that trajectories that start from H₂NO(²B₁) towards the product region detour around the conical intersection, pass through the neighborhood of the transition state that is located at the saddle point on the C_s pathway, and finally reach the products, NO(²Π)+H₂. Thus we can explain the mechanism of the H₂NO(²B₁)→NO(²Π)+H₂ reaction, which has remained unclear to date.