The chemical significance of the tertiary structures of polypeptides and proteins

A molecular modeling review of the X-ray crystallographically determined structures of some proteins and polypeptides, from the Brookhaven Protein Data Bank, has enabled us to identify chemically reactive, weak, amidic linkages in some of these molecules. This discovery should add new dimensions to the discussion of the significance of the tertiary structures of proteins and polypeptides, and to the chemistry of these polymers.     

Multi-Material Inkjet Printing of Self-Assembling and Reacting Coatings

Inkjet printing was used to deposit alternating 100 nm layers of anionic and cationic polymers in order to form self-assembled ionic complexes on flat and fabric substrates. The layers formed are characterized by elemental analysis, microscopy and solubility. As initially deposited, layers are soluble but form insoluble complexes when they are heated and annealed. This approach has been applied to polypeptides, polymer dyes, polymers with nanoparticulate pigments and also to epoxy adhesives.     

Recent developments in asymmetric catalysis using synthetic polymers with main chain chirality

Some recent developments in the use of main chain chiral polymer catalysts are summarized. These polymers are different from the traditional polymer catalysts that are prepared by anchoring monomeric chiral catalysts to an achiral polymer backbone. Three classes of synthetic main chain chiral polymers are discussed including: (1) helical polymers represented by polypeptides; (2) polymers with flexible chiral chains such as polyesters and polyamides; and (3) polymers of rigid and sterically regular chiral chains represented by chiral conjugated polybinaphthyls. Some of these polymer catalysts have shown high enantioselectivity in asymmetric organic transformations.     

Synthesis and conformation of sequential polypeptides of L-alanine and beta-aminobutyric acid.

Sequential polypeptides with the repeating units L-alanyl-(S)-beta-aminobutyric acid, L-alanyl-(R)-beta-aminobutyric acid, and L-alanyl-(R,S)-beta-aminobutyric acid have been synthesized by polycondensation of the N-hydroxysuccinimide ester hydrochloride salts of the corresponding dipeptides. Circular dichroism and infrared spectroscopy studies of films of the polypeptides and circular dichroism study of their solutions in hexafluoro-2-propanol and hexafluoropropane-2,2-diol show the tendency of the polypeptides to adopt the beta conformation in the solid state. In pure hexafluoro-2-propanol or hexafluoroacetone, the three polymers adopt what we interpret as random coil conformations. In mixtures of hexafluoro-2-propanol-water or hexafluoropropane-2,2-diol-water, the polypeptide containing the S isomer shows a definite tendency to form beta structure. This tendency is not established for the R and the R,S isomers.     

Injectable and biodegradable hydrogels: gelation, biodegradation and biomedical applications

Injectable hydrogels with biodegradability have in situ formability which in vitro/in vivo allows an effective and homogeneous encapsulation of drugs/cells, and convenient in vivo surgical operation in a minimally invasive way, causing smaller scar size and less pain for patients. Therefore, they have found a variety of biomedical applications, such as drug delivery, cell encapsulation, and tissue engineering. This critical review systematically summarizes the recent progresses on biodegradable and injectable hydrogels fabricated from natural polymers (chitosan, hyaluronic acid, alginates, gelatin, heparin, chondroitin sulfate, etc.) and biodegradable synthetic polymers (polypeptides, polyesters, polyphosphazenes, etc.). The review includes the novel naturally based hydrogels with high potential for biomedical applications developed in the past five years which integrate the excellent biocompatibility of natural polymers/synthetic polypeptides with structural controllability via chemical modification. The gelation and biodegradation which are two key factors to affect the cell fate or drug delivery are highlighted. A brief outlook on the future of injectable and biodegradable hydrogels is also presented (326 references).     

Additivity of the hydrogen bridges in several polymers of formamide

The purpose of the study was to examine the energy additivity of the hydrogen bridges in formamide polymers. Consideration was given to both the linear polymers observed in polypeptides, and to the cyclic polymers observed in the crystal structure. Additivity was found in several geometries. The linear polymers were considered as far as the tetramer, and the cyclic as far as the heptamer.Work supported in part by the Instituto Fisica, Universidad Nacional Autónoma de Mexico and Conacyt, México.     

Polypeptoids: A perfect match for molecular definition and macromolecular engineering?

Precision synthesis of polymers has been a hot topic in recent years. While this is notoriously difficult to address for polymers with a C? C backbone, Merrifield has discovered a way many decades ago for polypeptides. Using a similar approach, N‐substituted polypeptides, so‐called polypeptoids have been synthesized and studied for about 20 years. In contrast, the living ring‐opening polymerization (ROP) of N‐substituted N‐carboxyanhydrides was among the first living polymerizations to be discovered. More recently, a surge in new synthetic approaches led to the efficient synthesis of cyclic or linear multiblock copolypeptoids. Thus, polypeptoids can be synthesized either by solid phase synthesis to yield complex and exactly defined oligo‐ and small polymers or by ROP of appropriately N‐substituted N‐carboxyanhydrides (NNCA) to give linear, cyclic, or star‐like polymers. Together with an excellent biocompatibility, this polymer family may have a bright future ahead as biomaterials. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013, 51, 2731–2752     

Intrapolymer charge separation induced by picosecond multiphoton excitation: polyesters with pendant 1-pyrenyl groups in DMF

Intrapolymer electron transfer from the higher excited to the neighbouring ground states of pyrenyl chromophores occurs rapidly in polyesters. This charge separation process is characteristic of polymers and was not observed in the studies on bichromophoric model compounds. Relative geometrical structures of the relevant chromophores are discussed by comparing the results with those of polypeptides having the same chromophore.     

The Role of Conformations in the Interplay of Structure and Dynamics in Macromolecular and Supramolecular Systems

Summary: Following Paul J. Flory, the role of local chain conformation in determining the structure and dynamics of macromolecules is elucidated, employing advanced solid state NMR spectroscopy supported by X-ray scattering and dielectric spectroscopy. Topics covered include the local conformation in amorphous polymers, conformational memory, chain organization and dynamics in semicrystalline polymers, polypeptides, and rod-coil copolymers.     

Helical Nonfouling Polypeptides for Biomedical Applications

Chinese Journal of Polymer Science - Synthetic polypeptides, also known as poly(α-amino acid)s (PαAAs), are biomimetic and biodegradable polymers holding great potential for a variety of...     

Biopolymers as a Flexible Resource for Nanochemistry

Biomass is an abundant source of chemically diverse macromolecules, including polysaccharides, polypeptides, and polyaromatics. Many of these biological polymers (biopolymers) are highly evolved for specific functions through optimized chain length, functionalization, and monomer sequence. As biopolymers are a chemical resource, much current effort is focused on the breakdown of these molecules into fuels or platform chemicals. However there is growing interest in using biopolymers directly to create functional materials. This Minireview uses recent examples to show how biopolymers are providing new directions in the synthesis of nanostructured materials.     

Supramolecular polymerization from polypeptide-grafted comb polymers

The helical and tubular structures self-assembled from proteins have inspired scientists to design synthetic building blocks that can be "polymerized" into supramolecular polymers through coordinated noncovalent interactions. However, cooperative supramolecular polymerization from large, synthetic macromolecules remains a challenge because of the difficulty of controlling the structure and interactions of macromolecular monomers. Herein we report the synthesis of polypeptide-grafted comb polymers and the use of their tunable secondary interactions in solution to achieve controlled supramolecular polymerization. The resulting tubular supramolecular structures, with external diameters of hundreds of nanometers and lengths of tens of micrometers, are stable and resemble to some extent biological superstructures assembled from proteins. This study shows that highly specific intermolecular interactions between macromolecular monomers can enable the cooperative growth of supramolecular polymers. The general applicability of this strategy was demonstrated by carrying out supramolecular polymerization from gold nanoparticles grafted with the same polypeptides on the surface.     

Perturbation of nanoscale structure of polypeptide multilayer thin films

Multilayer thin films formed by sequential deposition of oppositely charged polypeptides on a charged surface are known from previous studies to comprise a mixture of types of secondary structure. Here, study of the perturbation of polypeptide film structure by deposition of poly(allylamine hydrochloride) (PAH) and poly(styrenesulfonate) (PSS) on the film surface has revealed differences in behavior attributable to physical properties of the peptides. The methods of analysis were circular dichroism spectroscopy (CD), ultraviolet spectroscopy (UVS), and quartz crystal microbalance (QCM). Films made of poly(L-lysine) (PLL) and poly(L-glutamic acid) (PLGA) with an average charge per monomer of about 1 were substantially more susceptible to perturbation of structure than films made of designed polypeptides with an average charge per monomer of about 0.5, despite preparation under identical conditions. PLL-PLGA films showed loss or gain of material and change in secondary structure content on perturbation, whether made of high molecular mass (ca. 90 kDa) or low molecular mass (ca. 14 kDa) polymers. By contrast, films made of very low molecular mass (ca. 3.5 kDa) designed polypeptides showed little change in secondary structure content. The data suggest that the penetrability of PSS or PAH into a film and therefore film density can depend substantially on the polypeptides of which it is made and the character of intermolecular interactions.     

Controlled synthesis of polypeptides

Polypeptides are one kind of promising biodegradable and biocompatible biomedical polymers with the structural units of various α-amino acids. Polypeptides were first polymerized by the ring-opening polymerization (ROP) of α-amino acid N-carboxyanhydrides (NCAs) by Leuchs and Hermann in 1906. In the past decades, several effective strategies, including the selection of initiators, the adjustment of reaction conditions, and the introduction of catalysts, have been reported to improve the controllability of the ROP of various α-amino acid NCAs to synthesize different polypeptides with precise chemical structures and low polydispersity indexes. In this Review, the strategies, mechanisms, challenges, and opportunities for controlled synthesis of polypeptides by the ROP of different α-amino acid NCAs have been declared.     

Cyclic polypeptides by thermal polymerization of α‐amino acid N‐carboxyanhydrides

The NCAs of the following five amino acids were polymerized in bulk at 120 °C without addition of a catalyst or initiator: sarcosine (Sar), L ‐alanine (L ‐Ala), D ,L ‐phenylalanine (D ,L ‐Phe), D ,L ‐leucine (D ,L ‐Leu) and D ,L ‐valine (D,L ‐Val). The virgin reaction products were characterized by viscosity measurements ¹³C NMR spectroscopy and MALDI‐TOF mass spectrometry. In addition to numerous low molar mass byproducts cyclic polypeptides were formed as the main reaction products in the mass range above 800 Da. Two types of cyclic oligo‐ and polypeptides were detected in all cases with exception of sarcosine NCA, which only yielded one class of cyclic polypeptides. The efficient formation of cyclic oligo‐ and polypeptides explains why high molar mass polymers cannot be obtained by thermal polymerizations of α‐amino acid NCAs. Various polymerization mechanisms were discussed. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 4012–4020, 2008     

Investigation of the carrier function of polypeptides. Synthesis,conformation and cytotoxicity of oxazolone conjugates of poly(Lys) and poly[Lys-(DL-ALAm)]

A new group of synthetic macromolecular conjugates was synthesised in which poly(Lys) or a branched polypeptide poly[Lys-(DL-Ala_m)] (m≅3) were used as carrier and 4-(ethoxymethylene)-2–phenyl–5 (4H)-oxazolone as hapten. These conjugates were characterized by amino acid analysis, identification of terminal residues of the side chain, sedimentation analysis. The conformation of conjugates and of carrier polypeptides were analyzed by circular dichroism spectroscopy in water solutions at various pH and ionic strengths. These data indicated a marked dependence of the conformation of the conjugate on the structure of carrier and on the number of the side chain terminal haptens (phOx). In vitro cytotoxicity of these polymers was also investigated using two different assays, by measuring the viability of isolated rat liver cells and the effect on growth of HeLa cells. Toxicity of polypeptides could be diminished by conjugates containing a higher amount of oxazolone. These conjugates with defined conformation and toxicological properties are considered suitable to analyse the carrier function of branched polypeptides, particularly the interaction with the immunological network.     

Synthesis,characterization and recent developments of liquid crystalline polymers

Recent developments of polymer liquid crystals (PLCs) are reviewed. The virial expansion method of Onsager and the lattice model used by Flory to appreciate the most relevant parameters in establishing mesomorphic behavior in polymeric systems are presented. These and other theoretical predictions are confirmed by numerous experiments. Both lyotropic (polymer solutions) and thermotropic (polymer melts) types of PLCs are considered with emphasis placed on the latter. The general properties of mesophases formed by such polymers are surveyed and some chemical structures capable of producing mesophases are classified in relation to their ability to form lyotropic and thermotropic systems. The synthetic routes, the effects of polymer structure on physical properties, and applications of two major classes of lyotropic systems (polypeptides, polyamides) and of a range of potentially important thermotropic polymers are discussed.     

Morphology and phase separation of hydrophobic clusters of soy globular protein polymers

Protein hydrophobic interaction has been considered the most important factor dominating protein folding, aggregation, gelling, self-assembly, adhesion, and cohesion properties. In this paper, morphology and phase separation of hydrophobic clusters, networks, and aggregates of soy globular protein polymers, induced by using a reducing agent (NaHSO3), are studied using microscopic instruments. The morphology and phase separation of these hydrophobic clusters are sensitive to protein structure and composition, pH, and ionic-strength (I(m)). Most of the clusters are in spherical-shape architecture and mainly consist of hydrophobic polypeptides. Rod-shape clusters were also observed at higher ionic strength, and mainly consist of hydrophilic polypeptides. The ratio of hydrophobic/hydrophilic (HB/HL) polypeptides is important to facilitate the formation of clusters in an environment with a certain pH value and ionic strength. At HB/HL 0.8, uniform spherical clusters were observed and diameters ranged from 30 to 70 nm. At HB/HL <0.8, large spherical clusters were formed with diameters ranging from 100 to 1,000 nm, and at HB/HL >or=1.8, large hydrophobic aggregates formed, and size of aggregates can be up to 2 500 nm. When solid content increased from 3% to 38%, at I(m) or= 0.115 mol x L(-1), HB/HL ratio >or=1.8, the large aggregates became very cohesive and viscoelastic. Clear phase separation was observed during curing between hydrophobic and hydrophilic protein polymers. Phase-separation degree increased as HB/HL ratio increased.     

Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector

A commercial air ejector was coupled to an electrospray ionization linear ion trap mass spectrometer (LTQ) to transport remotely generated ions from both electrospray (ESI) and desorption electrospray ionization (DESI) sources. We demonstrate the remote analysis of a series of analyte ions that range from small molecules and polymers to polypeptides using the AE-LTQ interface. The details of the ESI-AE-LTQ and DESI-AE-LTQ experimental configurations are described and preliminary mass spectrometric data are presented.     

Effect of Molecular Structure on Complexation Between Acidic- and Basic-Polypeptides in Solution

Abstract

Interpolymer complex formation between basic polypeptides, poly(L- proline) Form I [PLP(I)], Form II [PLP(II)] and poly-4-hydroxy-L-proline (PHLP), and acidic polypeptides, poly(L-glutamic acid) (PLGA), poly(D- glutamic acid) (PDGA) and poly(L-aspartic acid) (PLAA), has been studied in water-methanol (1:2 v/v) mixed-solvent by viscometry, potentiometry, light scattering and circular dichroism (CD) measurements. It has been found that polymer complexes between basic- and acidic- polypeptides are formed via hydrogen bonding with a stoichiometric ratio of basic/acidic polypeptides =1:2 (in unit mole ratio) and that PLP(II) forms polymer complex more favorably with PLGA than with PLAA, and the complex of PLP(II) with PLGA is also more favorable than the complex formation of PHLP with PLGA. In addition, the complex formation is highly dependent on the conformation, especially the optical structure of the component polymers, i.e., the stereoselective complexation is observed. The PLGA having a right-handed helix at pH 3.2 formed the complex favorably and quickly with left-handed helix PLP(II), whereas PDGA having a left-handed helix at pH 3.2 favorably formed the complex with right-handed helix PLP(I).