Ab initio calculation of the vibrational and electronic spectra of trans- and cis-azobenzene

We report accurate geometries and harmonic force fields for trans- and cis-azobenzene determined by second-order M?ller-Plesset perturbation theory. For the trans isomer, the planar structure with C(2h) symmetry, found in a recent gas electron diffraction experiment, is verified. The calculated vibrational spectra are compared with experimental data and density functional calculations. Important vibrational frequencies are localized and discussed. For both isomers, we report UV spectra calculated using the second-order approximate coupled-cluster singles-and-doubles model CC2 with accurate basis sets. Vertical excitation energies and oscillator strengths have been determined for the lowest singlet n(pi)* and (pi)(pi)* transitions. The results are compared with the available experimental data and second-order polarization propagator (SOPPA) and density functional (DFT) calculations. For both isomers, the CC2 results for the excitation energies into the S(1) and S(2) states agree within 0.1 eV with experimental gas-phase measurements.     

Ab initio structure of 3p4p in Si I

Multiconfiguration calculations have been performed in order to estimate ab initio energies for the configuration 3p4p in Si I. A preliminary attempt has also been made to calculate E2 transition rates for transitions from levels of 3p ² to those of 3p4p. However, these rates show a gauge dependence, which indicates that further correlation needs to be included to obtain accurate rates and lifetimes.     

Ab initio simulation of paramagnetic NMR spectra: the 31P NMR in oxovanadium phosphates

A theoretical analysis of the temperature-dependent (31)P NMR signals for the ambient pressure vanadyl pyrophosphate AP-(VO)(2)P(2)O(7) and the oxovanadium hemihydrate hydrogenophosphate VO(HPO(4)).0.5H(2)O phases is reported. The ab initio calculation of the magnetic exchange parameters and the hyperfine constants gives access to an original ab initio simulation of NMR spectra. Such a strategy allows one to clarify the crystallographic nature of the different experimentally studied phases. For the vanadyl pyrophosphate ambient pressure structure, our simulations strongly support the presence of a monoclinic phase. Based on this assumption, hyperfine constants are extracted from the fit of the experimental data. These values are directly compared to the ab initio ones.     

4D solid-state NMR for protein structure determination

Solid-state NMR offers the chance to extend structural studies to proteins that are otherwise difficult to study at atomic resolution, such as protein fibrils, membrane proteins or poorly diffracting crystals. As two-dimensional spatial correlation NMR spectra of proteins suffer from severe resonance overlap, we analyze in this perspective article the potential of higher-dimensional (3D and 4D) proton-detected experiments, which have an increased number of identifiable and assignable distance restraints for solid-state structural studies. We discuss practical considerations for the NMR measurements and the preparation of suitable protein samples and show results of structure calculations from 4D solid-state NMR spectra.     

Ab initio calculation of the electronic structure of TCNQ and its ions

Ab initio SCF-LCAO-MO calculations have been performed for TCNQ and its positive and negative ions in various electronic states. A basis set consisting of 412 primitive Gaussian type orbitals contracted to 180 was used in the investigation. The electron density distribution in TCNQ and the negative ions, and the redistribution upon ionization has been illustrated by plotting difference density contour maps. The quinone structure of the neutral TCNQ system undergoes a transformation to a benzenoid structure when electrons are added. Electronic transitions, ionization potentials and electron affinities have also been calculated.     

Ab initio calculation of the band structure of some boron polymers

Ab initio calculations using a STO-3G basis set have been performed on the polymer systems (HBX) _n where X = Be, BH, CH₂, NH, and O. Energy band diagrams and accompanying density-of-states plots have been obtained. The highest filled orbital of (HBNH) _n and (HBO) _n occurs at the X-point and possesses character while the - framework orbital at the X- point is the highest filled level for (HBBe) _n , (HBBH) _n , and (HBCH₂) _n . The conduction band for all five species has symmetry and the band gap of the (HBX) _n species increases in the order X = Be < BH < NH < O < CH₂. An estimate of the energy of polymerisation of the (HBX) _n systems suggests that HBNH is particularly stabilised by polymerisation. The electron distribution in (HBBe) _n shows a - electron drift towards boron, while in the other four systems the net electron transfer is directed away from boron. There is significant electron back-donation to boron in (HBO) _n and (HBNH) _n .     

Ab initio calculation of the band structure of some boron-nitrogen polymers

Ab initio calculations using a Gaussian orbital basis set were performed on the two boron-nitrogen polymer systems polyaminoborane and polyboronimide. For the polyaminoborane system an alternating B-N bond model appears to be more stable than a symmetric B-N bond model. An electron drift from the NH₂ group to the BH₂ moiety was calculated for both models although the nitrogen atom was found to possess a negative charge stemming from polarization of the N-H bonds. The energy band diagrams derived from both models show rather featureless bands indicative of weakly interactive systems although that of polyboronimide indicates that it is a more delocalized system than its saturated counterpart. The conduction and valence bands at the X-point are composed of orbitals and the lowest electronic transition is predicted to be —* in nature. The electron distribution of polyboronimide indicates a movement of -electrons from the boron to the nitrogen coupled with a smaller -electron drift from the nitrogen to the boron.     

Ab initio calculation of the structure of a complex LiBeH3 molecule

Ab initio calculations have been made for the areas of the potential surface of the LibeH₃ molecule in the vicinity of configurations where the Li⁺ cation is located over the edge, the vertex, and the plane of the BeH^?₃ anion. The specific features of the polytopic bond in complex LiMH_k+1 molecules are discussed.     

Complete cross-validation and R-factor calculation of a solid-state NMR derived structure

Cross-validation of a solid-state NMR-derived membrane polypeptide structure is demonstrated. An initial structure has been achieved directly from solid-state NMR derived orientational restraints based on a variety of anisotropic nuclear spin interactions. Refining the molecular structure involves setting up a penalty function that incorporates all available solid-state NMR experimental data and an energy function. A validation method is required to choose the optimal weighting factor for the total penalty function to balance the contribution from the experimental restraints and the energy function. Complete cross-validation has been used to avoid over-fitting the orientational restraints. Such cross-validation involves partitioning of the experimental data into a test set and a working set followed by checking the free R-value during the refinement process. This approach is similar to the method used in crystallography and solution NMR. Optimizing the weighting factor on the penalty function by cross-validation will increase the quality of the refined structure from solid-state NMR data. The complete cross-validation and R-factor calculation is demonstrated using experimental solid-state NMR data from gramicidin A, a monovalent cation channel in lipid bilayers.     

Ab initio rotation-vibration spectra of HCN and HNC

We have calculated an ab initio HCN/HNC linelist for all transitions up to J= 25 and 18000 cm(-1) above the zero point energy. This linelist contains more than 200 million lines each with frequencies and transition dipoles. The linelist has been calculated using our semi-global HCN/HNC VQZANO + PES and dipole moment surface, which were reported in van Mourik et al. (J. Chem. Phys. 115 (2001) 3706). With this linelist we synthesise absorption spectra of HCN and HNC at 298 K and we present the band centre and band transition dipoles for the bands which are major features in these spectra. Several of the HCN bands and many of the HNC bands have not been previously studied. Our line intensities reproduce via fully ab initio methods the unusual intensity structure of the HCN CN stretch fundamental (00(0)1) for the first time and also the forbidden (02(2)0) HCN bending overtone. We also compare the J = 1-->0 pure rotational transition dipole in the HCN/HNC ground and vibrationally excited states with experimental and existing ab initio results.     

Ab initio and semiempirical study of structure and electronic spectra of hydroxy substituted naphthoquinones

The geometries of hydroxy derivatives of 1,4-naphthoquinone (NQ), viz., 2-hydroxy-1,4-naphthoquinone (2HNQ), 5-hydroxy-1,4-naphthoquinone (5HNQ), and 5,8-dihydroxy-1,4-naphthoquinone (DHNQ), have been optimized using the semiempirical and ab initio theoretical methods. Semiempirical methods used for the optimization are Austin Model 1 (AM1) and Zerner's Intermediate Neglect of Differential Overlap/1(ZINDO/1). For ab initio calculations the 6-31G* basis set is used. The electronic spectra of 1,4-naphthoquinone and its hydroxy derivatives are calculated using the semiempirical Zerner's Intermediate Neglect of Differential Overlap/Spectroscopy (ZINDO/S) method employing the geometries optimized at AM1, ZINDO/1 and ab initio levels and compared with their electronic absorption spectra measured by us. For hydroxy substituted systems, such calculations for spectral assignments are made for the first time. It is found that though the predictions of the three theoretical methods for the geometries are similar, the predictions of the ZINDO/S method using the ZINDO/1 optimized geometries, are better for the transition wavelengths in the visible region of the hydroxy substituted naphthoquinones, especially for 5HNQ and DHNQ.     

Ab initio方法研究CH~3+OClO反应的可能通道

利用abinitio方法研究了CH~3+OClO反应的三个可能通道,首次应用UMP2(full)/6-31G(d,p)方法得到各反应物、产物、中间物及过渡态的优化构型和谐振频率;然后采用G2MP2理论计算各通道反应焓变和势垒高度。理论计算表明产物通道CH~2O+HOCl是最可能发生的途径,反应放热为443.80kJ·mol^-^1。可能的反应过程为：CH~3和OClO自由基先经无垒过程生成了一个富能中间物,继而通过较低的势垒解离成HOCl+H~2CO。     

Ab initio calculation of vibrational frequencies and Raman spectra of barium peroxide glass including comparison of tetrahedral BaO4 with GeO4 and SiO4

We have calculated the vibrational frequencies of clusters of atoms from the first principles by using the density-functional theory in the local density approximation (LDA). We are also able to calculate the electronic binding energy for all of the clusters of atoms from the optimized structure. We have made clusters of BanOm (n, m=1-6) and have determined the bond lengths, vibrational frequencies as well as intensities in each case. We find that the peroxide cluster BaO2 occurs with the O-O vibrational frequency of 836.3 cm(-1). We also find that a glass network occurs in the material which explains the vibrational frequency of 67 cm(-1). The calculated values agree with those measured from the Raman spectra of barium peroxide and Ba-B-oxide glass. We have calculated the vibrational frequencies of BaO4, GeO4 and SiO4 each in tetrahedral configuration and find that the vibrational frequencies in these systems depend on the inverse square root of the atomic mass.     

g-C_3N_4基多功能层光阳极在光电化学水分解中的应用（英文）

光电化学分解水制氢可以一并解决环境问题和能源危机,因而成为研究热点.由于TiO_2 禁带宽度较大,不能有效吸收太阳光中的可见光,使光电化学分解水制氢的应用受限.g-C_3N_4的禁带宽度约为2.7 e V,能有效吸收可见光,但g-C_3N_4薄膜制备研究较少.我们通过热聚缩合法直接在FTO导电玻璃上制备出g-C_3N_4薄膜,发现其光电化学分解水制氢稳定性不高,选择易制备的TiO_2 作为保护层可以提高g-C_3N_4的耐用性.此外,为提高g-C_3N_4光生电子空穴对的分离能力,依靠Co-Pi对光生空穴的捕获作用而将其覆盖在最外层.因此本文首次制备一种新型的g-C_3N_4/TiO_2 /Co-Pi光阳极用于光电化学分解水制氢,其中g-C_3N_4用作光吸收层,TiO_2 用作保护层,Co-Pi用作空穴捕获层.并在此基础上,通过扫描电子显微镜(SEM),X射线衍射(XRD),紫外可见光谱(UV-Vis)等手段研究了g-C_3N_4/TiO_2 /Co-Pi光阳极的形貌特征和光电化学性能.SEM、EDS和XRD结果表明,g-C_3N_4/TiO_2 /Co-Pi光阳极被成功制备在了FTO导电玻璃上,厚度约为3μm.UV-Vis测试表明,g-C_3N_4的光吸收边约为470 nm,可以有效地吸收可见光,并且g-C_3N_4的框架结构使光多次反射折射增加了光的捕获能力,由此可见,g-C_3N_4能够发挥很好的光吸收层作用.通过对g-C_3N_4光阳极,g-C_3N_4/TiO_2 光阳极和g-C_3N_4/TiO_2 /Co-Pi光阳极的电流电压测试发现,g-C_3N_4/TiO_2 光阳极的光电流密度小于g-C_3N_4光阳极,而g-C_3N_4/TiO_2 /Co-Pi光阳极的光电流密在可逆氢电极1.1 V下达到了0.346 mA?cm–2,约为单独g-C_3N_4光阳极的3.6倍.这说明Co-Pi是提升g-C_3N_4光电化学性能的主要因素.电化学阻抗测试结果发现,g-C_3N_4/TiO_2 /Co-Pi光阳极的界面电荷转移电阻小于g-C_3N_4光阳极的,这表明g-C_3N_4/TiO_2 /Co-Pi光阳极界面处载流子转移较快,同时也能促进内部光生电子空穴对的分离,整体性能的提高应该主要归因于Co-Pi对光生空穴的捕获作用.恒电压时间测试展示出g-C_3N_4/TiO_2 /Co-Pi光阳极的光电流密度在2 h测试过程中没有明显下降,表明g-C_3N_4/TiO_2 /Co-Pi光阳极是相当稳定的,具有良好的耐用性,归因于TiO_2 和Co-Pi的共同保护作用,主要归因于TiO_2 层对FTO导电玻璃上的g-C_3N_4薄膜保护,从电化学沉积Co-Pi到所有测试结束.总体而言,g-C_3N_4/TiO_2 /Co-Pi光阳极加强的光电化学性能归因于以下几个因素:(1)g-C_3N_4优异的光吸收能力;(2)TiO_2 稳定的保护提升了g-C_3N_4薄膜的耐用性;(3)Co–Pi对光生空穴的捕获有效促进了光生电子空穴对的分离.     

Ab initio calculations for the photoelectron spectra of vanadium clusters

We report ab initio calculations for the electronic and structural properties of V(n), V(n) (-), and V(n) (+) clusters up to n=8. We performed the calculations using a real-space pseudopotential method based on the local spin density approximation for exchange and correlation. This method assumes no explicit basis. Wave functions are evaluated on a uniform grid; only one parameter, the grid spacing, is used to control convergence of the electronic properties. Charged states are easily handled in real space, in contrast to methods based on supercells where Coulombic divergences require special handling. For each size and charge state, we find the lowest energy structure. Our results for the photoelectron spectra, using the optimized structure, agree well with those obtained by experiment. We also obtain satisfactory agreement with the measured ionization potential and electron affinity, and compare our results to calculations using an explicit basis.     

Ab initio study of the spectroscopy of CH3N and CH3CH2N

Complete active space (CAS) calculations with 6-311++g(3df,3pd) basis sets were performed for a large number of electronic states of the nitrate free radical (CH3N/CH3CH2N) and their positive and negative ions. All calculated states are valence states, and their characters are discussed in detail. To investigate the Jahn-Teller effect on the CH3N radical, Cs symmetry was used for both CH3N and CH3CH2N in calculations. The results (CASPT2 adiabatic excitation energies and CASSI oscillator strengths) suggest that the calculated transitions of CH3N at 32172 and 32139 cm(-1) are attributed to the 2(3)A' ' --> 1(3)A' ' and 1(3)A' --> 1(3)A' ', respectively, which is in accordance with the A3E --> X3A2 emission spectrum at T0 = 31 817 cm(-1). The calculated transitions of CH3CH2N at 334 nm are attributed to the 1(3)A' ' --> 2(3)A' ' and 1(3)A' ' --> 1(3)A', respectively, which is in accordance with the UV absorption spectrum of a series of 11 bands beginning at 335 nm. The vertical and adiabatic ionization energies were obtained to compare with the PES data. These results are in agreement with previous experimental data, which is discussed in detail.     

In-situ Construction of Sulfur-doped g-C3N4/defective g-C3N4 Iso-type Step-scheme Heterojunction for Boosting Photocatalytic H2 Evolution

The rational construction of a high-efficiency stepscheme heterojunctions is an effective strategy to accelerate the photocatalytic H₂.Unfortunately,the variant energy-level matching between two different semiconductor confers limited the photocatalytic performance.Herein,a newfangled graphitic-carbon nitride(g-C₃N₄)based isotype step-scheme heterojunction,which consists of sulfur-doped and defective active sites in one microstructural unit,is successfully developed by in-situ polymerizing N,N-dimethylformamide(DMF)and urea,accompanied by sulfur(S)powder.Therein,the polymerization between the amino groups of DMF and the amide group of urea endows the formation of rich defects.The propulsive integration of S-dopants contributes to the excellent fluffiness and dispersibility of lamellar g-C₃N₄.Moreover,the developed heterojunction exhibits a significantly enlarged surface area,thus leading to the more exposed catalytically active sites.Most importantly,the simultaneous introduction of S-doping and defects in the units of g-C₃N₄ also results in a significant improvement in the separation,transfer and recombination efficiency of photo-excited electron-hole pairs.Therefore,the resulting isotype step-scheme heterojunction possesses a superior photocatalytic H₂ evolution activity in comparison with pristine g-C₃N₄.The newly afforded metal-free isotype step-scheme heterojunction in this work will supply a new insight into coupling strategies of heteroatoms doping and defect engineering for various photocatalytic systems.