Assembly of the inorganic double helix Mg6(Et2NCO2)12 by fixation of carbon dioxide: crystal and solution structure

The homoleptic magnesium carbamato complex Mg6(Et2NCO2)12, 1 (Et2NCO2- = diethylcarbamato anion), was prepared by the reaction of dibutylmagnesium with diethylamine, followed by carboxylation using gaseous carbon dioxide. Crystallographic characterization demonstrated that 1 has the standard M6(R2NCO2)12 structure and is a double helix of MgO(x)(x = 5, 6) coordination polyhedra with Delta or Lambda stereochemistry arising from the configuration around the six-coordinate Mg2+ cations. It crystallized in the orthorhombic space group Ccca with two molecules of Delta1 and two of Lambda1 per unit cell (a = 21.548 A, b = 25.094 A, c = 15.4485(11) A, alpha = beta = gamma = 90 degrees ). Extensive solution characterization of 1 by 1-dimensional proton and 13C NMR spectroscopy and by two-dimensional 1H-[13C] NMR correlation techniques verified that the helical structure is maintained in solution. Moreover, these measurements indicated that the intramolecular dynamics of 1 relating to motions of the ethyl groups was substantially hindered in solution. Correlation of the crystallographic and NMR structural studies indicated that this arises from a combination of hindered rotation about the carbamato C-N bond and efficient packing of the ethyl groups around the Mg6O24 core. The result is an inverted-micelle-like structure for 1 in which the hydrophobic ethyl groups form a sheath largely restricting access to the hydrophilic Mg6O24 core.     

Characterizing challenging microcrystalline solids with solid-state NMR shift tensor and synchrotron X-ray powder diffraction data: structural analysis of ambuic acid

Synchrotron X-ray powder diffraction and solid-state (13)C NMR shift tensor data are combined to provide a unique path to structure in microcrystalline organic solids. Analysis is demonstrated on ambuic acid powder, a widely occurring natural product, to provide the complete crystal structure. The NMR data verify phase purity, specify one molecule per asymmetric unit, and provide an initial structural model including relative stereochemistry and molecular conformation. A refinement of X-ray data from the initial model establishes that ambuic acid crystallizes in the P2(1) space group with unit cell parameters a = 15.5047(7), b = 4.3904(2), and c = 14.1933(4) A and beta = 110.3134(3) degrees . This combined analysis yields structural improvements at two dihedral angles over prior NMR predictions with differences of 103 degrees and 37 degrees found. Only minor differences of +/-5.5 degrees , on average, are observed at all remaining dihedral angles. Predicted hydroxyl hydrogen-bonding orientations also fit NMR predictions within +/-6.9 degrees . This refinement corrects chemical shift assignments at two carbons and reduces the NMR error by approximately 16%. This work demonstrates that the combination of long-range order information from synchrotron powder diffraction data together with the accurate shorter range structure given by solid-state NMR measurements is a powerful tool for studying challenging organic solids.     

Preparation, characterization, and X-ray crystal structures of helical and syndiotactic zinc-based coordination polymers

The reactions of (facac)2Zn.2H2O (facac = 1,1,1,5,5,5-hexafluoroacetylacetonate) with 2,5-bis(4-ethynylpyridyl)furan (1) and 1,2-bis(4-ethynylpyridyl)benzene (2) yield, upon crystallization, coordination polymers. The former polymer, ((facac)2Zn.1)n, has an isotactic, helical structure in the solid state [monoclinic space group P2(1)/n; a = 11.0374(3) A, b = 24.2179(10) A, c = 14.3970(4) A, beta = 92.880(2) degrees; Z = 4]. The latter polymer, ((facac)2Zn.2)n, adopts a syndiotactic structure in the solid state [monoclinic space group P2(1)/n; a = 9.1344(1) A, b = 21.7985(5) A, c = 16.0322(4) A, beta = 99.6680(11) degrees; Z = 4]. The solution structures of the corresponding oligomers have been studied by low-temperature 1H and 19F NMR spectroscopy. Chiral polymers were prepared using the fragment [(+)-tfc]2Zn ((+)-tfc = 3-((trifluoromethyl)hydroxymethylene)-(+)-camphorate). A linear, zigzag structure was found for ([(+)-tfc]2Zn.1)n [triclinic space group P1; a = 7.4833(2) A, b = 14.1563(5) A, c = 21.21230(5) A, alpha = 78.4440(15) degrees, beta = 81.5644(15) degrees, gamma = 76.4976(13) degrees; Z = 1]. Reaction with tris(4-pyridyl)methanol (3) yielded a homochiral, helical polymer, ([(+)-tfc]2Zn.3)n [monoclinic space group C2; a = 25.0633(12) A, b = 11.8768(7) A, c = 17.1205(9) A, alpha = 90 degrees, beta = 117.954(3) degrees, gamma = 90 degrees; Z = 4].     

Calix[4]arene rhenium(V) complexes as potential radiopharmaceuticals

The calix[4]arene platform was used for the syntheses of novel rhenium(V) complexes, that may have potential applications as radiopharmaceuticals. The reaction of ReO(PPh3)2Cl3 with tetradentate N2O2-calix[4]arene ligand 8 in ethanol gave the novel mixed-ligand rhenium complex 9 with the structure ReO(N2O2-calix)OEt. The configuration was elucidated by using a number of 1H NMR techniques. In 9, the ethoxy ligand could be easily and quantitatively exchanged for another monodentate ligand to give complex 12. Tetradentate N2S2-calix[4]arene ligand 15 formed the rhenium complex 16 either via reaction with ReO(PPh3)2Cl3 in an organic solvent or by reaction with rhenium gluconate in an aqueous solution. Complex 16 showed good stability in phosphate-buffered saline solution (37 degrees C, 5 d). The crystal structures of a mono- and a bimetallic complex were determined. The bimetallic N2O2-calixarene complex dimer 11 crystallized in the monoclinic space group C2/c, with a = 38.963(5) A, b = 23.140(6) A, c = 27.382(6) A, beta = 128.456(10) degrees, V = 19,333(7) A3, Z = 8, and final R = 0.0519. The monometallic N2S2 model complex 17 crystallized in the monoclinic space group Cc, with a = 15.715(2) A, b = 12.045(2) A, c = 20.022(3) A, beta = 94.863(12) degrees, V = 3776.3(10) A3, Z = 4, and final R = 0.0342.     

A solid-state NMR method for solution of zeolite crystal structures

Since zeolites are notoriously difficult to prepare as large single crystals, structure determination usually relies on powder X-ray diffraction (XRD). However, structure solution (i.e., deriving an initial structural model) directly from powder XRD data is often very difficult due to the diffraction phase problem and the high degree of overlap between the individual reflections, particularly for materials with the structural complexity of most zeolites. Here, we report a method for structure determination of zeolite crystal structures that combines powder XRD and nuclear magnetic resonance (NMR) spectroscopy in which the crucial step of structure solution is achieved using solid-state (29)Si double-quantum dipolar recoupling NMR, which probes the distance-dependent dipolar interactions between naturally abundant (29)Si nuclei in the zeolite framework. For two purely siliceous zeolite blind test samples, we demonstrate that the NMR data can be combined with the unit cell parameters and space group to solve structural models that refine successfully against the powder XRD data.     

Simulated unfolded-state ensemble and the experimental NMR structures of villin headpiece yield similar wide-angle solution X-ray scattering profiles

With the advent of powerful synchrotron sources, solution X-ray scattering is being increasingly used to get basic information about the structure of polypeptides. The solution scattering technique essentially provides one-dimensional data, which are then interpreted in terms of a three-dimensional structure through model building. Here we calculate wide-angle solution scattering patterns for an ensemble of simulated unfolded structures of villin headpiece, which differ from the native structure by rmsd = 8.8 +/- 1.0 A and have only negligible amounts of native secondary structure. We show that the wide-angle solution scattering pattern of such an ensemble shares significant similarity with the one based on the experimental NMR structures of the molecule. Our results suggest that solution scattering in the wide-angle limit, by itself, provides very little information about the secondary structure content of a polypeptide or its side-chain packing.     

Organic-inorganic hybrids based on polyoxometalates. 6. Syntheses, structure, and reactivity of the bis(tert-butylsilyl)decatungstophosphate [(gamma-PW10O36)(t-BuSiOH)2]3-

Bis(tert-butylsilyl)decatungstophosphate (n-Bu4N)3[(gamma-PW10O36)(t-BuSiOH)2] (1) has been synthesized through phase-transfer conditions, by reaction of t-BuSiCl3 with Cs7[(gamma-PW10O36)].xH2O. This new hybrid anion has been characterized by elemental analysis, X-ray crystallography, multinuclear solution and solid-state NMR, and infrared spectroscopy. Crystals of 1 are monoclinic, space group C2/c, with lattice constants a = 44.762(10) A, b = 19.032(4) A, c = 22.079(8) A, beta = 98.9(2) degrees, and Z = 8. Anion 1 has nominal Cs symmetry and displays an "open structure" with two t-BuSiOH groups anchored to the (gamma-PW10O36) framework. The two t-BuSiOH units are nonequivalent as confirmed by 29Si CP-MAS NMR and by diffuse reflection infrared spectroscopy. The two OH groups are linked through one H-bond (dO-O = 2.63 A). According to 29Si and 183W NMR, 1 adopts a more symmetrical conformation (C2v) in solution. Anion 1 reacts cleanly in homogeneous conditions with Me2SiCl2 to yield (n-Bu4N)3[(gamma-PW10O36)(t-BuSiO)2(SiMe2)] (2). The structure of 2 has been inferred from multinuclear NMR and infrared spectroscopy. The hybrid "closed-structure" anion 2 consists of the (gamma-PW10O36) framework on which is grafted a heterosilylated network composed of a capping fragment, Si(CH3)2, linked to the t-BuSi groups through two siloxane bridges.     

金(Ⅲ)与杯[4]乙酯合钠髣超分子化合物:[Na(C_(60)H_(80)O_(12))]~ [Au(SCN)_4]~-的合成、结构及性能

0引言杯芳烃是由酚环和亚甲基组成的环多聚体,杯芳烃奇异的环状结构和可调节的空穴特征,引起广大化学工作者的浓厚研究兴趣,不同类型的新型杯芳烃及其衍生物已相继被合成出来[1]。其中有些杯芳烃化合物在浓缩分离、催化仿生、环境保护等方面已显示出良好的应用性能[2,3];一些杯     

Solution and solid-state structure of (1-methoxy-8-naphthyllithium. THF)(2)

The structure of (1-methoxy-8-naphthyllithium.THF)(2), (2.THF)(2), determined by single-crystal X-ray diffraction (crystal data: monoclinic, a = 8.1816 (5), b = 21.9649 (14), and c = 8.2345 (3) A, beta = 117.969 (3) degrees; V = 1306.97 (12) A(3); space group P2(1)/n; Z = 4) reveals a centrosymmetrical dimer with a twist angle of about 63 degrees between the naphthyl rings and the Li-C(ipso)-Li plane, representing an intermediate between perpendicular and planar tetracoordinated C(ipso). NMR studies at low temperature indicate that 2 is dimeric in THF-d(8) solution under these conditions.     

Tetrahedral tellurate

A tetraethylammonium (TEA) salt of TeO 4 (2-) was synthesized by reacting Te(OH) 6 with tetraethylammonium hydroxide. X-ray structural analysis of (TEA) 2TeO 4.2H 2O confirmed that this new compound consists of discrete TeO 4 (2-) anions of distorted tetrahedral structure together with TEA cations and water molecules of crystallization [ a = 8.0820(9) A, b = 13.7730(12) A, c = 20.1590(18) A, V = 2244.0(4) A (3), Z = 4, and space group Pccb]. The (125)Te NMR spectrum indicated that water reacts with the TeO 4 (2-) anion to regenerate octahedral tellurate species in solution.     

Templating Schiff-base lateral macrobicycles: an experimental and theoretical structural study of the intermediates

In this paper, we report a structural study both in the solid state and in solution of barium complexes with the diamine N,N'-bis(2-aminobenzyl)-4,13-diaza-18-crown-6 (L(2)), that allows us to rationalize the template effect of the metal ion in the synthesis of Schiff-base lateral macrobicycles resulting from the condensation of L(2) with different dicarbonyl compounds. The X-ray crystal structures of [Ba(L(2))(ClO(4))](ClO(4)) (3) [triclinic space group P1 with Z = 2, a = 10.467(2) A, b = 10.4755(2) A, c = 16.9911(3) A, alpha = 85.075(1) degrees, beta = 80.907(1) degrees, and gamma = 61.627(4) degrees ] and [Ba(L(2))(NCS)(H(2)O)](SCN) (4) [monoclinic space group P2(1)/n with Z = 4, a = 9.954(5) A, b = 29.193(5) A, c = 11.313(5) A, and beta = 91.371(5) degrees ] demonstrate that in the solid state the barium(II) ion induces an anti conformation of the receptor in the complexes. Variable temperature (1)H and (13)C NMR data point out that in solution compounds 3 and 4 exist as a mixture of syn and anti isomers. The presence of the syn isomer in solution, independent of the counterion employed (perchlorate or thiocyanate), accounts for the effectiveness of the barium(II) ion as a template agent in the synthesis of the lateral macrobicycles resulting from the condensation of L(2) with different dicarbonyl compounds. Density functional theory calculations (at the B3LYP/LanL2DZ level) for [Ba(L(2))](2+) predict the syn conformation to be more stable both in vacuo and in solution (PCM model). In order to asses which of the two isomers predominates in acetonitrile solution, the (13)C NMR shielding tensors of the two isomers of [Ba(L(2))](2+) were calculated for the in vacuo optimized structures by using the GIAO method, and the results were compared with the experimental ones. According to these analyses, a syn stereochemistry is assigned to the major species in solution.     

Three‐dimensional structure of cyclic antibiotic teicoplanin aglycone using NMR distance and dihedral angle restraints in a DMSO solvation model

The three‐dimensional solution conformation of teicoplanin aglycone was determined using NMR spectroscopy. A combination of NOE and dihedral angle restraints in a DMSO solvation model was used to calculate an ensemble of structures having a root mean square deviation of 0.17 Å. The structures were generated using systematic searches of conformational space for optimal satisfaction of distance and dihedral angle restraints. Comparison of the NMR‐derived structure of teicoplanin aglycone with the X‐ray structure of a teicoplanin aglycone analog revealed a common backbone conformation with deviation of two aromatic side chain substituents. Experimentally determined backbone ¹³C chemical shifts showed good agreement with those computed at the density functional level of theory, providing a cross validation of the backbone conformation. The flexible portion of the molecule was consistent with the region that changes conformation to accommodate protein binding. The results showed that a hydrogen‐bonded DMSO molecule in combination with NMR‐derived restraints together enabled calculation of structures that satisfied experimental data. Copyright © 2015 John Wiley & Sons, Ltd.     

Structural investigations of a lead(IV) tetraacetate-pyridine complex

A 1 : 1 crystalline complex of lead(IV) tetraacetate and pyridine (LTA-py) has been prepared. The single-crystal X-ray structure, at 296 and 150 K, establishes the presence of a relatively short Pb-N bond (2.307 A) within an intriguing seven-coordinate lead inner sphere consisting of the pyridine ligand and two bidentate and two monodentate acetate ligands. The pyridine occupies a surprising amount of the available coordination space and has induced a dramatic change in coordination compared to the four chelating acetate ligands found in lead tetraacetate (LTA). Thermal measurements (TGA/DSC) indicate the de-coordination of pyridine and its loss from the solid between 360 and 380 K. (207)Pb CP/MAS NMR spectroscopy also demonstrates the existence of the Pb-N bond through observation of (1)J((207)Pb,(14)N)= 63 Hz and a (207)Pb-(14)N dipolar coupling constant, of 149 Hz. The solid-state (207)Pb NMR parameters are used to give insight into the coordination environment of Pb(iv) in LTA-py. In solution, ligand exchange is rapid on chemical shift and J-coupling time scales. A (207)Pb NMR study of the titration of an LTA solution by pyridine yields a stability constant for LTA-py of K = 1.5 M(-1) and predicts it to have a (207)Pb NMR chemical shift essentially identical to that observed by CP/MAS NMR in the solid state. This correlation between the solid state and solution indicates that the seven-coordinate LTA-py structure found in the crystalline state does persist in solution, and this could further explain why the addition of pyridine has such profound effects on lead(IV) carboxylate-mediated organic reactions. Simulations of exchange-broadened line shapes of (13)C CP/MAS NMR spectra in the temperature regime above 280 K indicate local motion of the pyridine rings in the form of 180 degrees jumps (activation energy 72.5 kJ mol(-1)); these are first such ring flips reported for a coordinated pyridine ligand.     

Chelation of vanadium(V) by difluoromethylene bisphosphonate, a structural analogue of pyrophosphate

The structural and functional analogy between difluoromethylene bisphosphonate (CF2PP) and pyrophosphate (PPi) is investigated in a reaction with V(V) in the form of vanadate. The reaction of CF2PP with vanadate was investigated using 1.00 M KCl as supporting electrolyte over the ranges 3 < or = [CF2PP] < or = 60 mM and 2.06 < or = pH < or = 11.80. 51V, 19F, and 31P NMR spectroscopic studies showed that a 1:1 species was formed with an H+-dependent formation constant of 110 M-1 at pH 7.22. Results of solution experiments and ab initio calculations are consistent with CF2PP coordinating V(V) in a bidentate manner, as previously reported for PPi. Below pH 4, a minor complex forms, which is consistent with a 1:2 stoichiometry. This complex was also observed with pyrophosphate. The X-ray crystal structure of the monoprotonated difluoromethylene bisphosphonate anion (H[CF2PP]3-)-toludine complex is presented. The H[CF2PP]3- anion crystallized in the triclinic space group P with a = 12.7629(7) A, b = 13.3992(7) A, c = 17.1002(9) A, and V = 2584.4(2) A3, and Z = 2. Sheets of the layers of anions are connected through a network of H-bonds and separated by a layer of toludine cations. The structural features are investigated, and the CF2PP anion was found to be longer and wider than the corresponding PPi. Given the larger size of this anion compared to PPi, the chelation affinity upon CF2 substitution was found to be 4-5-fold reduced at neutral pH.     

一水合(E)-N'-(5-氯-2-羟基苯亚甲基)-2-(8-羟基喹啉基)-乙酰肼Schiff碱的合成及其晶体结构

在甲醇溶液中,5-氯水杨醛和8-羟基喹啉乙酰肼经缩合反应合成了新化合物--一水合(E)-N'-(5-氯-2-羟基苯亚甲基)-2-(8-羟基喹啉基)-乙酰肼Schiff碱(1),其结构经1H NMR,IR,元素分析和X-射线单晶衍射表征.1属正交晶系,P2_12_12_1空间群,晶胞参数:a=4.748(5) (A),b=15.818(14) (A),c=22.802(2) (A),α=β=γ=90.00 °,V=1 712.0(3) (A)~3,Z=4,Dc=1.450 g·cm~(-3),μ=0.253 mm~(-1),F(000) =776,R_1=0.072 5,wR_2=0.102.1通过氢键相互作用,连接成一维无限链结构.     

Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data

Determination of the 3D structures of multidomain proteins by solution NMR methods presents a number of unique challenges related to their larger molecular size and the usual scarcity of constraints at the interdomain interface, often resulting in a decrease in structural accuracy. In this respect, experimental information from small-angle scattering of X-ray radiation in solution (SAXS) presents a suitable complement to the NMR data, as it provides an independent constraint on the overall molecular shape. A computational procedure is described that allows incorporation of such SAXS data into the mainstream high-resolution macromolecular structure refinement. The method is illustrated for a two-domain 177-amino-acid protein, gammaS crystallin, using an experimental SAXS data set fitted at resolutions from approximately 200 A to approximately 30 A. Inclusion of these data during structure refinement decreases the backbone coordinate root-mean-square difference between the derived model and the high-resolution crystal structure of a 54% homologous gammaB crystallin from 1.96 +/- 0.07 A to 1.31 +/- 0.04 A. Combining SAXS data with NMR restraints can be accomplished at a moderate computational expense and is expected to become useful for multidomain proteins, multimeric assemblies, and tight macromolecular complexes.     

Synthesis, structure, and redox and catalytic properties of a new family of ruthenium complexes containing the tridentate bpea ligand

We have prepared a new family of ruthenium complexes containing the bpea ligand (where bpea stands for N,N-bis(2-pyridyl)ethylamine), with general formula [Ru(bpea)(bpy)(X)](n+) (2, X = Cl(-); 3, X = H(2)O; 4, X = OH(-)), and the trisaqua complex [Ru(bpea)(H2O)(3)](2+), 6. The complexes have been characterized through elemental analyses, UV-vis and (1)H NMR spectroscopy, and electrochemical studies. For complex 3, the X-ray diffraction structure has also been solved. The compound belongs to the monoclinic P2(1)/m space group, with Z = 2, a = 7.9298(6) A, b = 18.0226(19) A, c = 10.6911(8) A, and beta = 107.549(8) degrees. The Ru metal center has a distorted octahedral geometry, with the O atom of the aquo ligand placed in a trans position with regard to the aliphatic N atom of the bpea ligand so that the molecule possesses a symmetry plane. NMR spectra show that the complex maintains its structure in aqueous solution, and that the corresponding chloro complex also has a similar structural arrangement. The pH dependence of the redox potential for the complex [Ru(bpea)(bpy)(H2O)](PF(6))(2) is reported, as well as the ability of the corresponding oxo complex to catalyze the oxidation of benzylic alcohol to benzaldehyde in both chemical and electrochemical manners.     

First synthesis of phenylazomethine dendrimer ligands and structural studies.

Novel dendritic polyphenylazomethines (DPAs), which consist of a pi-conjugated backbone, were synthesized up to the fourth generation by the convergent method via dehydration of aromatic ketones with aromatic amines in the presence of titanium(IV) tetrachloride. The obtained dendrimers, DPA G1-4 (designated as GX, where X is the generation number), show high thermostability (Td(10%) 521 degrees C in DPA G4) and high solubility for the common solvents such as chloroform, THF, and DMSO unlike the conventional linear polyphenylazomethines, which have very low solubilities. The DPA G4 molecule was confirmed to have a spherelike structure by GPC measurement and a molecular model based on the crystal structure of DPA G2. Crystal data for DPA G2: monoclinic space group P2(1)/a, a = 25.352(4) A, b = 8.577(2) A, c = 16.151(2) A, beta = 106.25(1) degrees, V = 3371.6(10) A(3), Z = 2, D(calc) = 1.168 g/cm(3), mu(Cu Kalpha) = 0.536 cm(-1), final R = 0.089, and R(w) = 0.287. The molecular modeling reveals that a DPA G4 molecule has a spherelike structure, in which the height, width, and depth are 2.3, 2.9, and 2.5 nm, respectively. The TEM and AFM pictures show the DPA G4 molecules to have a spherelike structure (the diameter: 2.3 nm) and are regularly assembled on a plate by casting. The occupied area of one DPA G4 molecule in a monolayer on water was estimated by pi-A measurements to be 3.8-4.2 nm(2) (the calculated diameter 2.2-2.3 nm, which agreed with the TEM result). NMR studies (1H NMR at 130 degrees C and T(1) measurements) supported a conformational rigidity of DPA G4 in solution.     

A molecular mechanics-NMR pseudoenergy approach to the solution conformation of glycolipids

We present here a protocol for the determination of oligosaccharide solution conformation from a combination of molecular mechanics calculations and NMR distance constraints treated as pseudoenergies. As an illustration of our methodology we have chosen the determination of the solution conformation of the tetrasaccharide headgroup of the glycolipid globoside. In order to test the ability of our methodology to avoid becoming trapped in local minima, we have chosen three starting structures, well displaced from one another in conformational space. The structures obtained upon convergence of the calculations with distance constraint pseudoenergies were quite similar to one another. For two of the three glycosidic linkages in globoside, the results from the calculations were virtually identical for each of the three starting structures. We also apply our protocol to a model which allows for the existence of multiple conformers in an effort to explore the possibility of conformational flexibility in the oligosaccharide headgroup of globoside.