Semiempirical molecular orbital studies of phthalocyanines

A semi-empirical MO method, the PEEL method, has been applied in an investigation of the electronic structure and excited states of copper phthalocyanine. The absorption spectrum of CuPc is discussed and assignments are made. New bands ofn- ^*,d-d and CT types are predicted. The calculated values of ESR parameters accord very well with experimental values, indicating that the method gives a correct electronic distribution.

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Zusammenfassung Eine semiempirische MO-Methode, die PEEL-Methode, wurde bei der Untersuchung der Elektronenstruktur und der angeregten Zustände von Kupferphthalocyaninen angewendet. Das Absorptionsspektrum des CuPc wird interpretiert. Neue Banden vomn- ^*-,d-d- und CT-Typ werden vorhergesagt. Die berechneten Werte der ESR-Parameter stimmen gut mit den experimentellen Werten überein, wodurch gezeigt wird, daß die Methode eine korrekte Elektronenverteilung ergibt.

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Résumé Une méthode d'OM semi-empirique, la méthode PEEL, est appliquée à l'étude de la structure électronique et des états excités de la phtalocyanine du cuivre. Le spectre d'absorption de CuPc est discuté et des attributions sont effectuées. De nouvelles bandes de typen- ^*,d-d et CT sont prédites. Les valeurs calculées des paramètres ESR sont en bon accord avec les valeurs expérimentales, indiquant que la méthode donne une distribution électronique correcte.

     

Semiempirical molecular orbital calculations on boranes

Traditional Pariser-Parr-Pople and variable electronegativity calculations have been carried out on C₆H₅B(OR)₂ and p-CH₃OC₆H₄B(OR)₂, and the results compared with calculations for C₆H₅BR₂. It is concluded that the VE-SCF method offers a real advantage over the simple PPP method for predicting percent charge transfer and transition intensity in cases where excited states possess substantial C.T. character. The restriction that empirically chosen parameters fit the observed transition energies and intensities of both triarylboranes and ArB(OR)₂ requires the choice of a boron VSIP greater than 2.0 eV in the fixed parameter procedure of the usual PPP-SCF-CI method for these molecules. Observed transitions in C₆H₅B(OR)₂ correlate with ¹ L _b, ¹ L _a, ¹ B _b, whereas the first absorption maximum of (C₆H₅)₃B is assigned to C.T. (¹ A ₁¹ A ₁) local C _2v symmetry.

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Zusammenfassung PPP- und VE SCF-Rechnungen wurden für C₆H₅B(OR)₂ und p-CH₃OC₆H₄(OR)₂ durch- geführt, und die Ergebnisse wurden mit denjenigen für C₆H₅BR₂ verglichen. Es kann der Schluß gezogen werden, daß die VE SCF-Methode einen Vorteil gegenüber der einfachen PPP-Methode bietet, um den prozentualen Charge Transfer und Übergangsintensitäten in Fällen zu bestimmen, in denen die angeregten Zustände einen wesentlichen C.T.-Charakter besitzen. Die Bedingung, daß die empirisch gewählten Parameter den beobachteten Übergangsenergien und -intensitäten von sowohl Triarylboranen als auch ArB(OR)₂ angepaßt sein sollen, erfordert die Wahl eines Bor-VSIP größer als 2,0 eV im Rahmen der üblichen Parametrisierung der PPP-SCF-CI-Methode. Beobachtete Über-gänge in C₆H₅B(OR)₂ korrelieren mit ¹ L _b, ¹ L _a, ¹ B _b, wogegen das erste Absorptionsmaximum des (C₆H₅)₃B einem C.T.-Übergang (¹ A ₁¹ A ₁) lokaler C_2v -Symmetrie zugeordnet wird.

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Résumé Des calculs traditionnels Pariser-Parr-Pople et des calculs d'électronégativité variable ont été effectués sur C₆H₅B(OR)₂ et p-CH₃OC₆H₄B(OR)₂ avec comparison aux résultats obtenus pour C₆H₅BR₂. La conclusion est que la méthode VE-SCF offre un réel avantage sur la méthode PPP simple en ce qui concerne la prédiction du transfert de charge et de l'intensité de transition pour les états excités possédant un net caractère de transfert de charge. La restriction selon laquelle les paramètres empiriques doivent permettre de reproduire les énergies de transition et les intensités des deux triarylboranes et de ArB(OR)₂, nécessite le choix d'un potential d'ionisation de l'état de valence du bore supérieur de 2 eV à celui employé dans les méthodes ordinaires. Les transitions observées dans C₆H₅B(OR)₂ sont reliées à ¹ L _b, ¹ L _a, ¹ B _b, tandis que la première absorption de (C₆H₅)₃B est attribuée à un transfert de charge (¹ A ₁¹ A ₁) de symétrie locale C_2v.

     

Semiempirical molecular orbital theory in carcinogenesis research

It is generally believed that most chemical carcinogens exert their effects through covalent modification of the nucleic acid base sites. Significant clarification of the underlying chemistry involved in these early and critical events is available through the techniques of computational chemistry. The role of semiempirical molecular orbital theory in this area is reviewed using examples focusing on

1. (i) the conversion of precarcinogens to reactive electrophiles,

2. (ii) the regiochemistry of nucleic acid adduct formation,

3. (iii) the chemical and physical consequences of nucleic acid base modification, and

4. (iv) empirical structure activity relationships.

The symbiotic relationship that can exist between the semiempirical and ab initio molecular orbital procedures is emphasized, as is the continuing niche for the semiempirical methodology in the study of systems that are too large, or in situations that are insufficiently cost effective, for the application of ab initio methods.     

Molecular structure and electronic spectrum of ellagic acid: Semiempirical molecular orbital calculations

The molecular structure of ellagic acid has been optimized by using PM3 semiempirical MO method. Ellagic acid has been calculated to be planar with the molecular symmetry of C_2h. The lactone carbonyl groups are not tilted from the molecular plane. CNDO/S MO method has been used to interpret the experimental uv-vis spectroscopic data. The results of the PM3 and CNDO/S calculations have been in good agreement with the experimental data.     

Ab initio molecular orbital studies of polyethylene deformation

A molecular LCAO Hartree-Fock procedure was used to calculate total energies of axially stretched normal paraffins containing up to nine carbon atoms. The results are used to model the mechanical properties of polyethylene.     

Semiempirical molecular orbital studies on p-quinodimethane. Electronic structure assignments based on total energies and comparisons with photoelectron and absorption spectra

The electronic structure of p-quinodimethane has been investigated using both CNDO/S and INDO molecular orbital approximations. It is found that the energetically favorable configuration is a “quinoid” construction leading to a spin-paired singlet ground state. Comparisons of the calculated excitation energies and orbital orderings with optical and photoemission measurements are consistent with this assignment. The “quinoid” configuration is found to be energetically unfavorable toward the formation of a low-lying triplet or “biradical”-like state. Charge density distributions, however, suggest a high ground state chemical reactivity.     

Ab initio molecular orbital studies for compounds of magnesium

Using a 6-311G** basis set with estimation of correlation energy at the MP2 level, structural and energetic data for 40 molecular species containing magnesium have been calculated. For about half the species studied, further energetic data were obtained using Pople's G2 method. Enthalpy changes at 298.15 K were obtained for isogyric reactions and standard enthalpies of formation were derived from these. Comparison of the standard enthalpies of formation with the sparse literature data suggests the MP2/6-311G** standard enthalpies of formation are accurate to ± 15 kJ mol^?1 and the corresponding G2 enthalpies accurate to ± 10 kJ mol^?1. The calculated ΔH [MgN, g] revealed a gross error in the currently accepted value for this function. It is intended that these results will be used to parameterize the semiempirical molecular orbital package, MOPAC, for the element magnesium. © John Wiley & Sons, Inc.     

Spectral studies and molecular orbital PPP-calculations of some azo-dyes

The UV, IR and 1H-NMR spectra of some 4-(R-phenyl azo) 1-hydroxy 2-naphthoic acid derivatives are studied. The effects of substituent groups and the solvent polarity on electronic spectral, IR bands and 1H-NMR proton chemical shifts are considered, the molecular orbital calculations obtained are rationalized quantitatively with that obtained practically using the PPP-model with configuration interaction (CI).     

STM studies of single molecules: molecular orbital aspects

As a fundamental and frequently referred concept in modern chemistry, the molecular orbital plays a vital role in the science of single molecules, which has become an active field in recent years. For the study of single molecules, scanning tunneling microscopy (STM) has been proven to be a powerful scientific technique. Utilizing specific distribution of the molecular orbitals at spatial, energy, and spin scales, STM can explore many properties of single molecule systems, such as geometrical configuration, electronic structure, magnetic polarization, and so on. Various interactions between the substrate and adsorbed molecules are also understood in terms of the molecular orbitals. Molecular engineering methods, such as mode-selective chemistry based on the molecular orbitals, and resonance tunneling between the molecular orbitals of the molecular sample and STM tip, have stimulated new advances of single molecule science.     

Nonlinear optical properties of dicyanomethylene‐derived heteroaromatic dyes: Semiempirical molecular orbital calculations and experimental investigations

The effect of conformation (E/Z isomerism), nature (donor/acceptor) of substituents, and endgroups (indandione, pyrazolone, pyrazoledione) on the molecular hyperpolarizability β_vec of dicyanomethylene (hetero)aromatic dyes is investigated by means of semiempirical (AM1, ZINDO) molecular orbital calculations. Unless Z isomers are stabilized by intramolecular hydrogen bonding, generally E conformers have larger β_vec's. Replacement of one nitrile group of the dicyanomethylene moiety by p‐aminoaryl rather than p‐R‐arylamino (R=NMe₂, MeO, H, NO₂) is found to be advantageous. Increasing the acceptor strength of 29 by successively replacing the carbonyl with dicyanovinyl groups leads to a maximum of β_vec for the derivative with one rather than two C(CN)₂ groups. With respect to endgroups, the indandione moiety generally is the least active group. Solvent effects are treated within the framework of the self‐consistent reaction field approximation. In most cases gas‐phase tendencies are either parallel or even reinforced if solvent effects are taken into account. The calculated results are compared with electric field induced second harmonic generation (EFISH) measurements. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 79: 253–266, 2000     

硝酸酯化合物生成热的分子轨道研究

用MINDO/3, MNDO和AM1三种SCF-MO方法, 在全优化分子几何构型的基础上, 系统地计算研究了32个硝酸酯化合物的生成热, 与实验值相比, MNDO计算结果偏大很多; MINDO/3计算值与凝聚相实验值符合较好, 由于克服了MNDO法过高地估算原子之间Van der Waals核排斥能的缺点, AM1法给出了较满意的结果: 与七个气态实验值之间存在良好的线性关系(相关系数为0.992), 其间的平均绝对差值和平均差值分别只有10.28和-1.01kJ/mol。     

Ab initio molecular orbital studies of nonidentity allyl transfer reactions

Ab initio molecular orbital (MO) calculations are carried out on the nonidentity allyl transfer processes, X^? + CH₂CHCH₂Y ? CH₂CHCH₂ X + Y^?, with X^? = H, F, and Cl and Y = H, NH₂, OH, F, PH₂, SH, and Cl. The Marcus equation applies well to the allyl transfer reactions. The transition state (TS) position along the reaction coordinate and the TS structure are strongly influenced by the thermodynamic driving force, whereas the TS looseness is originated from the intrinsic barrier. The intrinsic barrier, ΔE, looseness, %L?, and absolute asymmetry, %AS?, are well correlated with the percentage bond elongation, %CY? = [(d ? d)/d] × 100 and/or %CX?. The %CY? and the bond orders indicate that a stronger nucleophile and/or a stronger nucleofuge (or a better leaving group) leads to an earlier TS on the reaction coordinate with a lesser degree of bond making as well as bond breaking. These are consistent with the Bell-Evans-Polanyi principle and the Leffler-Hammond postulate. © 1995 by John Wiley & Sons, Inc.     

SCF molecular orbital studies of internal rotation in the monofluorobenzaldehydes

The potential function for internal rotation of the aldehyde group in the orthometa- and para-fluorobenzaldehydes is calculated by CNDO/2, INDO and STO/6G methods, assuming invariant bond lengths. The INDO and STO/6G calculations indicate the equilibrium geometry to be essentially planar and the barrier to internal rotation to be the potential energy of the molecule when the plane of the aldehyde group is perpendicular to the ring plane; CNDO/2 leads to different conclusions, however. Relative stabilities of O-cis and O-trans rotamers of the planar configuration are discussed. Comparisons are made with the V barriers and the enthalpies of activation as determined by the dielectric absorption method using a matrix technique.     

Semiempirical versusab initio calculations of molecular properties

A comparative study of the structural parameters in some strained spirohydrocarbons is presented. The theoretical values provided by the STO-3G, MINDO/3 and IMOA methods are in reasonable agreement with each other and with available experimental data offering thus a posteriori justification of the employed approximate schemes.     

Semiempirical molecular orbital studies on the electronic structure of molecules in excited states: The INDO/2-VN— 1 potential model: Part I.

The performance of the V_N—1 potential model at the INDO/2 level of approximation in the calculation of transition energy, singlet—triplet splitting, change in molecular structure, inversion barrier and electron-density distribution in the excited electronic states of a few simple carbonyls is analysed. The method turns out to be reasonably successful in many ways.     

Non-empirical SCF molecular orbital studies on simple zeolite model systems

Non-empirical molecular orbital studies on the relative stabilities of topologically closed ring clusters H₈Si₄O₄, [H₈Si₃AlO₄]^? and [H₈Si₂Al₂O₄]^? modelling building units of zeolite frameworks, have been carried out. According to the calculations, AlOAl type bridges are unstable in doubly negative charged species, but can be stabilized in the presence of cations. This stabilization effect increases with increasing cation charge. Several hypothetical bimolecular cluster equilibria are also discussed.     

Semiempirical studies of core-electron binding energy shifts

The inner-core binding-energy shifts (BEs) of boron and carbon atoms in various chemical environments were studied by the semiempirical Self-Consistent Charge Molecular Orbital (SCC MO) method. The calculations are based on the initial ground state electrostatic potential model. The main feature of our approach is the empirical treatment of the coefficient relating BEs with the orbital populations of the host atom and the Madelung energy term. These adjustable parameters absorb a large portion of relaxation energy. The so obtained results are in good agreement with experimental data. They are better than earlier CNDO/2 results obtained by using either ground state or relaxation potential models. Present results indicate that semiempirical methods like SCC MO are able to account for changes in BE(1s) with a fair accuracy although the inner-shell electrons are not explicitly considered in the actual calculations.