Detailing hydrogen bonding and deprotonation equilibria between anions and urea/thiourea derivatives

Spectrophotometric and 1H NMR titrations of N-methoxyethyl-N'-(4-nitrophenyl)thiourea (3) by Bu(4-)NOAc show that in DMSO deprotonation of the receptor and formation of a hydrogen-bonded complex with anion proceed simultaneously but in MeCN deprotonation requires the participation of the second acetate anion. The formation constants of hydrogen-bonded complexes were determined from titrations in the presence of added acetic acid, which suppressed deprotonation. These constants together with independently measured stability constants of (AcO)(2)H(-) complexes were employed for a rigorous numerical analysis of titration results in the absence of added acid, which allowed us to determine the equilibrium deprotonation constants as well as pKa values for 3 in both solvents. Although 3 appeared to be a weaker acid than AcOH in both solvents, it can be deprotonated by acetate in dilute solutions when the concentration of liberated acetic acid is low enough. With disubstituted N,N-bis(methoxyethyl)-N'-(4-nitrophenyl)thiourea 4 only deprotonation equilibrium is observed. In contrast, both parent urea derivatives 1 and 2 cannot be deprotonated by acetate anions. Independent of the real type of equilibrium, whether it is a deprotonation or a hydrogen bonding, titration plots always can be satisfactorily fitted to a formal 1:1 binding isotherm. A relationship between apparent "binding constants" and real equilibrium constants of hydrogen bonding association and deprotonation processes is discussed.     

The role of hydrogen bonding in excited state intramolecular charge transfer

Intramolecular charge transfer (ICT) that occurs upon photoexcitation of molecules is a vital process in nature and it has ample applications in chemistry and biology. The ICT process of the excited molecules is affected by several environmental factors including polarity, viscosity and hydrogen bonding. The effect of polarity and viscosity on the ICT processes is well understood. But, despite the fact that hydrogen bonding significantly influences the ICT process, the specific role of hydrogen bonding in the formation and stabilization of the ICT state is not unambiguously established. Some literature reports predicted that the hydrogen bonding of the solvent with a donor promotes the formation of a twisted intramolecular charge transfer (TICT) state. Some other reports stated that it inhibits the formation of the TICT state. Alternatively, it was proposed that the hydrogen bonding of the solvent with an acceptor favors the TICT state. It is also observed that a dynamic equilibrium is established between the free and the hydrogen bonded ICT states. This perspective focuses on the specific role played by hydrogen bonding of the solvent with the donor and the acceptor, and by proton transfer in the ICT process. The utility of such influence in molecular recognition and anion sensing is discussed with a few recent literature examples in the end.     

Conformers and intramolecular hydrogen bonding of the oxalic acid monomer and its anions

Density functional theory, B3LYP/6‐31G** and B3LYP/6‐311+G(2d,p), and ab initio MP2/6‐31G** calculations have been carried out to investigate the conformers, transition states, and energy barriers of the conformational processes of oxalic acid and its anions. QCISD/6‐31G** geometrical optimization is also performed in the stable forms. Its calculated energy differences between the two most stable conformers are very near to the related observed value at 7.0 kJ/mol. It is found that the structures and relative energies of oxalic acid conformers predicted by these methods show similar results, and that the conformer L1 (C_2h) with the double‐interfunctional‐groups hydrogen bonds is the most stable conformer. The magnitude of hydrogen bond energies depends on the energy differences of various optimized structures. The hydrogen bond energies will be about 32 kJ/mol for interfunctional groups, 17 kJ/mol for weak interfunctional groups, 24 kJ/mol for intra‐COOH in (COOH)₂, and 60 kJ/mol for interfunctional groups in (COOH)COO⁻¹ ion if calculated using the B3LYP/6‐311+G(2d,p) method. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 76: 541–551, 2000     

On differences between hydrogen bonding and improper blue-shifting hydrogen bonding.

Twenty two hydrogen-bonded and improper blue-shifting hydrogen-bonded complexes were studied by means of the HF, MP2 and B3LYP methods using the 6-31G(d,p) and 6--311 ++G(d,p) basis sets. In contrast to the standard H bonding, the origin of the improper blue-shifting H bonding is still not fully understood. Contrary to a frequently presented idea, the electric field of the proton acceptor cannot solely explain the different behavior of the H-bonded and improper blue-shifting H-bonded complexes. Compression of the hydrogen bond due to different attractive forces-dispersion or electrostatics--makes an important contribution as well. The symmetry-adapted perturbation theory (SAPT) has been utilized to decompose the total interaction energy into physically meaningful contributions. In the red-shifting complexes, the induction energy is mostly larger than the dispersion energy while, in the case of blue-shifting complexes, the situation is opposite. Dispersion as an attractive force increases the blue shift in the blue-shifting complexes as it compresses the H bond and, therefore, it increases the Pauli repulsion. On the other hand, dispersion in the red-shifting complexes increases their red shift.     

Influence of excited state aromaticity in the lowest excited singlet states of fulvene derivatives

The absorption spectra and excited state dipole moments of four differently substituted fulvenes have been investigated both experimentally and computationally. The results reveal that the excited state dipole moment of fulvenes reverses in the first excited singlet state when compared to the ground state. The oppositely polarized electron density distributions, which dominate the ground state and the first excited singlet state of fulvenes, respectively, reflect the reversed π-electron counting rules for aromaticity in the two states (4n + 2 vs. 4n, respectively). The results show that substituents indeed influence the polarity of fulvenes in the two states, however, cooperative interactions between the substituents and the fulvene moiety are most pronounced in the ground state.     

Unique hydrogen bonds between 9-anthracenyl hydrogen and anions

Unique hydrogen bonds of the 9-H of anthracene moieties in hosts 1 and 2 with fluoride and pyrophosphate ions were observed on the basis of the (1)H NMR experiments. Furthermore, hosts 1 and 2 act as a colorimetric sensor and a fluorescent chemosensor for the recognition of fluoride ion, respectively.     

The effects of dissolved halide anions on hydrogen bonding in liquid water

It is widely believed that the addition of salts to water engenders structural changes in the hydrogen-bond network well beyond the adjacent shell of solvating molecules. Classification of many ions as "structure makers" and "structure breakers" has been based in part on corresponding changes in the vibrational spectra (Raman and IR). Here we show that changes in O-H vibrational spectra induced by the alkali halides in liquid water result instead from the actions of ions' electric fields on adjacent water molecules. Computer simulations that accurately reproduce our experimental measurements suggest that the statistics of hydrogen-bond strengths are only weakly modified beyond this first solvation shell.     

Ultrafast intermolecular hydrogen bond dynamics in the excited state of fluorenone

Steady-state fluorescence and time-resolved absorption measurements in pico- and femtosecond time domain have been used to investigate the dynamics of hydrogen bond in the excited singlet (S(1)) state of fluorenone in alcoholic solvents. A comparison of the features of the steady-state fluorescence spectra of fluorenone in various kinds of media demonstrates that two spectroscopically distinct forms of fluorenone in the S(1) state, namely the non-hydrogen-bonded (or free) molecule as well as the hydrogen-bonded complex, are responsible for the dual-fluorescence behavior of fluorenone in solutions of normal alcoholic solvents at room temperature (298 K). However, in 2,2,2-trifluoroethanol (TFE), a strong hydrogen bond donating solvent, emission from only the hydrogen-bonded complex is observed. Significant differences have also been observed in the temporal evolution of the absorption spectroscopic properties of the S(1) state of fluorenone in protic and aprotic solvents following photoexcitation using 400 nm laser pulses. An ultrafast component representing the solvent-induced vibrational energy relaxation (VER) process has been associated with the dynamics of the S(1) state of fluorenone in all kinds of solvents. However, in protic solvents, in addition to the VER process, further evolution of the spectroscopic and dynamical properties of the S(1) state have been observed because of repositioning of the hydrogen bonds around the carbonyl group. In normal alcohols, two different kinds of hydrogen-bonded complex of the fluorenone-alcohol system with different orientations of the hydrogen bond with respect to the carbonyl group and the molecular plane of fluorenone have been predicted. On the other hand, in TFE, formation of only one kind of hydrogen-bonded complex has been observed. These observations have been supported by theoretical calculations of the geometries of the hydrogen-bonded complexes in the ground and the excited states of fluorenone. Linear correlation between the lifetimes of the equilibration process occurring because of repositioning of the hydrogen bonds and Debye or longitudinal relaxation times of the normal alcoholic solvents establish the fact that, in weakly hydrogen bond donating solvents, the hydrogen bond dynamics can be described as merely a solvation process. Whereas, in TFE, hydrogen bond dynamics is better described by a process of conversion between two distinct excited states, namely, the non-hydrogen-bonded form and the hydrogen-bonded complex.     

Ground state and excited state dipole moments of alkyl substituted para-nitroaniline derivatives

The ground state and excited state dipole moment of a series of alkyl substituted para-nitroaniline derivatives is reported. Ground state dipole moment was determined by the Debye-Guggenheim method and the excited state dipole moment was estimated using the solvatochromic method. For all molecules under investigation, the excited state dipole moment was found to be higher than the ground state dipole moment. The molecules exhibited positive solvatochromism.     

Fluorescence from the second excited state of an anthracene crystal observed by two-step excitation

Weak fluorescence from the second excited state of an anthracene crystal has been observed by two-step excitation via the lowest excited state. Relaxation processes of a highly excited state to the lowest state are discussed.     

Intramolecular hydrogen bonding in 1-nitro-5,10-dihydrophenazine derivatives

The formation of free radicals only for derivatives with a nitro group in the 1 position was observed in the oxidation of a number of 5-substituted 5,10-dihydrophenazines with lead dioxide. A long-wave absorption band was observed in the electronic spectra of the derivatives with a nitro group in the 1 position. The assumption of the formation of an intramolecular hydrogen bond in dihydrophenazines with a nitro group in the 1 position was confirmed by quantum-chemical modeling of the three structures of the 1,3-dinitro-5-phenyl-5,10-dihydrophenazine molecule. By comparison of the integral intensities of the bands of the stretching vibrations of the N-H bond in 5-substituted dihydrophenazines it was concluded that this bond is depolarized in derivatives with an intramolecular hydrogen bond.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No, 2, pp, 263–265, February, 1978.     

Density functional theory and atoms-in-molecules investigation of intramolecular hydrogen bonding in derivatives of malonaldehyde and implications for resonance-assisted hydrogen bonding

A density functional theory (DFT) and atoms-in-molecules (AIM) analysis has been applied to the intramolecular hydrogen bonding in the enol conformers of malonaldehyde and its fluoro-, chloro-, cyano-, and nitro-substituted derivatives. With the B3LYP/6-311++G(2d,p) method, good agreement between the DFT geometries and published experimental structures has been found. The donor-acceptor distance was also varied in a series of constrained optimizations in order to determine if energetic, structural, and topological trends associated with intermolecular hydrogen bonding remain valid in the intramolecular case. At very short donor-acceptor distances (<2.24 A), the hydrogen is symmetrically located between donor and acceptor; at distances longer than this, the hydrogen bonding is no longer symmetric. The AIM methodology has been applied to explore the topology of the electron density in the intramolecular hydrogen bonds of the chosen model systems. Most AIM properties for intramolecular hydrogen bond distances longer than 2.24 A show smooth trends, consistent with intermolecular hydrogen bonds. Integrated AIM properties have also been used to explore the phenomenon of resonance-assisted hydrogen bonding (RAHB). It is shown that as the donor-acceptor distance is varied, pi-electron density is redistributed among the carbon atoms in the intramolecular hydrogen bond ring; however, contrary to prior studies, the integrated atomic charges on the donor-acceptor atoms were found to be insensitive to variation of hydrogen-bonding distance.     

Studies on the hydrogen bonding of aniline's derivatives by FT-IR

The hydrogen bonding of 23 aniline's derivatives in various solvents and in solid states are studied by Fourier transform infrared spectroscopy. The Infrared absorption of their amino group is greatly influenced by solvents. Compared with those data determined in hexane, the symmetric stretching frequency (nu(s)) and asymmetric stretching frequency (nu(as)) of amino group have an obvious bathochromic shift in benzene, but a relatively smaller shift in CCl4. It is also found that the concentration of these compounds has very little effect on the frequencies, the band shapes and relative absorption intensities of amino group. This indicates that the intermolecular hydrogen bonds are very weak between the aniline's derivatives in the solution. The substituent of methyl (-CH3) has different electronic effects in organic solvents with various polarities. Methyl group behaves as an electron-donating functional group in hexane, however, it shows an electron-withdrawing effect in benzene. When methoxyl (CH3O-) is ortho-substituted, v(as) of amino group increases and nu(s) almost does not change. While methoxyl (CH3O-) is meta-substituted, v(as) of amino group increases, but nu(s) decreases. The groups of chloro- (Cl-) and nitro- (-NO2) cause a hyposochromic shift of the nu(as) and nu(s) of amino group, while substituent of -NH2 makes a bathochromic shift. The solvents influence the relative intensities of nu(as) and nu(s) of amino group more greatly than the substituents do. In solid states, the amino group of aniline's derivatives has more than two absorption bands because of forming the inter- or intra-molecular hydrogen bonds.     

Unusual hydrogen bonding behavior in binary complexes of coinage metal anions with water

We have studied the interaction of atomic coinage metal anions with water molecules by infrared photodissociation spectroscopy of M-.H2O.Ar(n) clusters (M=Cu, Ag, Au; n=1, 2). We compare our observations with calculations on density-functional and coupled cluster levels of theory. The gold anion is bound to the water molecule by a single ionic hydrogen bond, similar to the halide-water complexes. In contrast, zero-point motion in the silver and copper complexes leads to a deviation from this motif.     

Molecular structure,conformational stability,energetic and intramolecular hydrogen bonding in ground,and electronic excited state of 3-mercapto propeneselenal

In the present work, a conformational analysis of 3-mercapto propeneselenal is performed using several computational methods, including DFT (B3LYP), MP2, and G2MP2. At the DFT and G2MP2 levels the most stable conformers of title compound are characterized by an extended backbone structure, minimizing the steric repulsions between the sulfur and selenium lone pairs. Two conformers exhibit hydrogen bonding. This feature, although not being the dominant factor in energetic terms, appears to be of foremost importance to define the geometry of the molecule. The influence of the solvent on the stability order of conformers and the strength of intramolecular hydrogen bonding was considered using the PCM, SCI–PCM, and IEF–PCM methods. The results of analysis by quantum theory of “Atoms in Molecules” and natural bond orbital method fairly support the DFT results. The calculated HOMO and LUMO energies showed that charge transfer occurs within the molecule. Further verification of the obtained transition state structures was implemented via intrinsic reaction coordinate analysis. Calculations of the ¹H NMR chemical shift at GIAO/B3LYP/6–311++G** levels of theory are also presented. The excited-state properties of intramolecular hydrogen bonding in hydrogen-bonded systems have been investigated theoretically using the time-dependent density functional theory method.     

Nonconventional hydrogen bonding between clusters of gold and hydrogen fluoride

The bonding patterns between small neutral gold Au(3 < or = n < or = 7) and hydrogen fluoride (HF)(1 < or = m < or = 4) clusters are discussed using a high-level density functional approach. Two types of interactions, anchoring Au-F and F-H...Au, govern the complexation of these clusters. The F-H...Au interaction exhibits all the characteristics of nonconventional hydrogen bonding and plays a leading role in stabilizing the lowest-energy complexes. The anchor bonding mainly activates the conventional F-H...F hydrogen bonds within HF clusters and reinforces the nonconventional F-H...Au one. The strength of the F-H...Au bonding, formed between the terminal conventional proton donor group FH and an unanchored gold atom, depends on the coordination of the involved gold atom: the less it is coordinated, the stronger its nonconventional proton acceptor ability. The strongest F-H...Au bond is formed between a HF dimer and the singly coordinated gold atom of a T-shape Au4 cluster and is accompanied by a very large red shift (1023 cm(-1)) of the nu(F-H) stretch. Estimations of the energies of formation of the F-H...Au bonds for the entire series of the studied complexes are provided.     

Polarization effect in the electronically excited state of benzene derivatives and related compounds

The energies of intramolecular charge-transfer bands and excited singlet and triplet states, as well as the molar absorption coefficients of mono- and para-disubstituted benzenes and monosubstituted naphthalenes and pyridines depend not only on the inductive and resonance substituent effects, but also on their polarization effect which can be characterized by σ_α constants. The polarization effect determines the lifetime of the triplet state and phosphorescence quantum yield of monosubstituted naphthalenes.