Two-dimensional gel electrophoresis, protein electroblotting and microsequencing: a direct link between proteins and genes.

We have used two-dimensional gel electrophoresis as a general "preparative" method to purify proteins for microsequencing analysis. In the first experiments, proteins derived from a total extract of Nicotiana tabacum leaf tissue were directly blotted from the gel onto poly(4-vinyl-N-methylpyridinium iodide)-coated glass fiber sheets. The major spots were excised and subjected to NH2-terminal sequence analysis, which made it possible to identify five of the eight selected proteins, while two more were recognized by generated internal sequences. In a second set of experiments, proteins of human origin were separated on multiple two-dimensional gels and the Coomassie Brilliant Blue-stained spots were excised from the gels. The combined spots were re-eluted and concentrated in a new gel and blotted on Immobilon. They were fragmented by in situ proteolysis and the generated peptides were separated by reverse phase-high performance liquid chromatography and sequenced. At the average, the internal sequences that were obtained covered 35 residues per protein and allowed unambiguous identification of 13 of the 23 proteins analyzed so far. The sequence information obtained of the unidentified proteins is sufficient for further cloning. These results demonstrate that systematic sequence analysis of the major proteins seen in two-dimensional gels is within the reach of current technologies. This offers a unique opportunity to link information contained in protein databases with known or forthcoming DNA sequence data.     

Reassessment of commercially available molecular weight standards for peptide sodium dodecyl sulfate-polyacrylamide gel electrophoresis using electroblotting and microsequencing

Myoglobin CNBr peptides, constituting the commercially available molecular weight calibration kits for sodium dodecyl sulfate-polyacrylamide gel electrophoresis, were analyzed by microsequencing after electroblotting on polyvinylidene difluoride (Immobilon) membranes. An obvious disagreement was found between peptide identification and the data provided by the manufacturers. We observed 6 peptides from Mr 2500 to 17,000 corresponding, in increasing size order, to the 3 peptides resulting from the total CNBr digestion, to 2 incompletely cleaved peptides and to the intact myoglobin. Using a corrected calibration curve, a linear relationship was established from Mr 6000 to 43,000 and a second one for shorter peptides. This method of electrophoresis and electroblotting, easily adapted for peptides, is a powerful tool for peptide identification correlated with size determination. It is especially useful for CNBr-cleaved peptides.     

Vertical agarose gel electrophoresis and electroblotting of high-molecular-weight proteins

The electrophoretic separation of high-molecular-weight proteins (> 500 kDa) using polyacrylamide is difficult because gels with a large enough pore size for adequate protein mobility are mechanically unstable. A 1% vertical sodium dodecyl sulfate (SDS)-agarose gel electrophoresis (VAGE) system has been developed that allows titin (a protein with the largest known SDS subunit size of 3000-4000 kDa) to migrate over 10 cm in a approximately 13 cm resolving gel. Such migration gives clear and reproducible separation of titin isoforms. Proteins ranging in size from myosin heavy chain ( approximately 220 kDa) up to titin can be resolved on this gel system. Electroblotting of these very large proteins was nearly 100% efficient. This VAGE system has revealed two titin size variants in rabbit psoas muscle, two N2BA bands in rabbit cardiac muscle, and species differences between titins from rat and rabbit muscle. Agarose electrophoresis should be the method of choice for separation and blotting of proteins with very large subunit sizes.     

S-carboxymethylation of proteins transferred onto polyvinylidene difluoride membranes followed by in situ protease digestion and amino acid microsequencing.

S-Carboxymethylation of immobilized proteins, separated by gel electrophoresis and transblotted to polyvinylidene difluoride (PVDF) membranes is described. In situ protease digestion was used to produce peptide fragments in high yields that were suitable for microsequencing. These fragments could also be used to produce peptide maps, obtained by reverse-phase high performance liquid chromatography (HPLC), that exhibited excellent reproducibility and were comparable to results obtained from digestions in solution. This technique makes it possible to identify Cys residues during Edman degradation. Approximately 70% of the amino acid residues from a protein were determined using only 50-200 pmol. Sufficient information for production of oligonucleotide probes was obtained using 10-50 pmol of material applied to a polyacrylamide gel.     

One-step electroblotting of 2- to 100-kDa proteins onto a PVDF membrane

This article describes a method for electroblotting peptides and small proteins (< 100 kDa) from tricine gels onto a PVDF membrane. The major potential problem with these types of procedures is that proteins tend to stay in the gel under conditions where peptides are effectively eluted. The suggested protocol allows the complete transfer and binding of proteins and peptides in the range of 2–97 kDa.     

Revisiting electroblotting of immobilized pH gradient gels: a new protocol for studying post-translational modification of proteins

Currently, one of the most important techniques in proteome analysis is two-dimensional electrophoresis that is widely used for separation of thousands of different protein spots. Nevertheless, characterization of special aspects in protein patterns, e.g., separation of protein isoforms generated by post-translational modifications, requires individual detection methods, e.g., immunoblotting. Blotting of proteins after fractionation in immobilized pH gradients has always caused some problems. In this paper we present an optimized protocol for immunoblotting after isoelectric focusing using immobilized pH gradient (IPG) strips cast on Net-Fix as an internal support that is permeable to electric current. The focusing procedure can be carried out in commonly used IPG systems, e.g., the IPGphor by Amersham Biosciences, where electrically assisted rehydration can be performed. This may be of interest for many laboratories, because the same system as used for the first dimension of two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) is involved. As an example, we describe separation and detection of up to seven isoforms of recombinant erythropoietin beta using semidry blotting of IPG strips and visualization by chemiluminescence detection.     

Proton-conducting polymer membranes for direct methanol fuel cells

Three methods to block the methanol transport through proton-conducting polymer membranes while maintaining the proton conductivity unchanged have been conducted; 1) selective layer formation on the surface of the membrane, 2) prearation of nanoclay composite membrane providing tortuous pathway of methanol, 3) control and fixation of the proton transport channels. The methanol permeability through the membranes decreased significantly at the expense of the small decrease in the proton conductivity. It is thus concluded that both the structure and the fixation of the proton transport channels are crucial in optimizinging proton conducting membranes for direct methanol fuel cells.     

Structural analysis of recombinant proteins prepared by semi-dry electroblotting after sodium dodecyl sulfate-polyacrylamide gel electrophoresis

Proteins that were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis were electroblotted onto polyvinylidene difluoride membranes in procedures to prepare homogeneous recombinant proteins for direct N-terminal sequence analysis. A semi-dry blotting procedure was employed to immobilize protein bands on the membranes for subsequent sequence analysis. This method has been used routinely to evaluate the quality of recombinant proteins, which are present in crude cell extracts produced by different expression systems or under different expression conditions. N-Terminal processing, amino acid misincorporation, as well as the inefficient secretion of recombinant proteins can be detected by direct N-terminal sequence analysis of the purified electroblotted samples. Consequently, time-consuming chromatographic procedures can be eliminated. These procedures are also especially valuable for determining degradation sites of a purified recombinant protein, as well as evaluating multiple gene products expressed by isolated cluster genes.     

Fully automated capillary isotachophoresis of proteins

An apparatus for fully automated capillary isotachophoresis was constructed. A commercial apparatus (Shimadzu IP-2A) was modified in the electrolyte pumping system and the flow lines were simplified. An automatic sampler was used for sequential sampling. The equipment, pumps, the sampler, a high-voltage DC power supply, and a recorder, were controlled by a system controller which comprises a microcomputer and a BASIC program for time-control of the equipments. The apparatus was successfully used for the automated sequential analysis of human serum proteins. Forty serum samples were analyzed within 17 h without manual operation and for each sample the serum proteins were resolved into about twenty UV peaks or shoulders.     

Sulfonated polyethersulfone Cardo membranes for direct methanol fuel cell

Novel proton conducting membranes, sulfonated polyethersulfone Cardo (SPES-C), were prepared with concentrated sulfonic acid at room temperature. The degree of sulfonation was controlled by reaction time. Their proton conductivity and methanol permeability as a function of temperature were investigated. The SPES-C membranes with 70% DS were still not water soluble and had low degree of swelling. With the level of 70% sulfonation, proton conductivity was 0.011 S/cm at 80 °C, 0.0338 S/cm at 110 °C, which approached that of Nafion^® 115 membrane at the same conditions. Methanol permeability of SPES-C membranes was considerably smaller than that of Nafion^® 115 membrane over the temperature 25–80 °C.     

Mapping and identification of Mycobacterium tuberculosis proteins by two-dimensional gel electrophoresis, microsequencing and immunodetection

Mycobacterium tuberculosis is the infectious agent giving rise to human tuberculosis. The entire genome of M. tuberculosis, comprising approximately 4000 open reading frames, has been sequenced. The huge amount of information released from this project has facilitated proteome analysis of M. tuberculosis. Two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) was applied to fractions derived from M. tuberculosis culture filtrate, cell wall, and cytosol, resulting in the resolution of 376, 413, and 395 spots, respectively, in silver-stained gels. By microsequencing and immunodetection, 38 culture filtrate proteins were identified and mapped, of which 12 were identified for the first time. In the same manner, 23 cell wall proteins and 19 cytosol proteins were identified and mapped, with 9 and 10, respectively, being novel proteins. One of the novel proteins was not predicted in the genome project, and for four of the identified proteins alternative start codons were suggested. Fourteen of the culture filtrate proteins were proposed to possess signal sequences. Seven of these proteins were microsequenced and the N-terminal sequences obtained confirmed the prediction. The data presented here are an important complement to the genetic information, and the established 2-D PAGE maps (also available at: www.ssi.dk/publichealth/tbimmun) provide a basis for comparative studies of protein expression.     

An automated direct sample insertion system for the inductively coupled plasma

A new sample introduction system for inductively coupled plasma emission spectrometry is described. With this system, sample carrying cups can be sequentially and automatically inserted into an ICP discharge using a pneumatically activated transport system. The system carousel holds up to 24 cups (graphite or metal) and is located below a modified plasma torch that accommodates pneumatic injection of the entire sample carrying cup. The torch-insertion subassembly allows height programming of the final insertion and hence steps such as drying and ashing can be performed in situ. The system is applicable to the analysis of small volumes of liquids (10 μl) and small amounts (10 mg) of powders. The analytical characteristics will be presented including signal temporal behavior, detection limits and precision. Preliminary results indicate that the direct quantitative analysis of powdered botanicals and coal is feasible.     

An automated injection system for sub-micron sized channels used in shear-driven-chromatography

This paper describes a method to automatically and reproducibly inject sharply delimited sample plugs in the shallow (i.e., sub-micron) channels typically used in shear driven chromatography. The formation of asymmetric plugs, which typically occurs during loading of the sample in wide channels, is circumvented by etching a slit in the middle of the channel that is connected to a micro-well and a vacuum system with syringes for the supply of both the analyte and the mobile phase. The design of the injection slit was supported by a series of CFD simulations to optimize its shape and that of the corresponding injection well. The system was intensively tested experimentally and showed good reproducibility, both for the width and the area of the injected peaks (relative standard deviations are max. 4 and 6%, respectively). The concentration of the injected plug was found to be approximately 80% of the original sample concentration. It was also observed that with the current setup the lower limit of the peak width was about 120 microm. This is a consequence of the fact that the peak width originating from the convection filling step becomes negligible to the contribution of diffusion during the filling and flushing time. Being fully automated and perfectly closed, the presently proposed injection system also paves the way to integrate other functionalities in shear driven chromatography, i.e. gradient elution and parallelization.     

直接甲醇燃料电池用PEMs的研究进展

本文介绍了用于直接甲醇燃料电池(DMFCs)的质子交换膜(PEMs)的工作原理与性能要求。讨论了影响DMFCs国PEMs的甲醇渗透性能的因素。综述了Nation、改性Nafion膜以及其它新品种膜的研究进展。     

Fouling of nanofiltration membranes used for separation of fermented glycerol solutions

In this study, the glycerol solutions were fermented using Lactobacillus casei bacteria. The broths were pre-treated by microfiltration, followed by a further separation with nanofiltration. The latter process was carried out in two stages, using the NF270 and NF90 membranes, respectively. The concentrates thus obtained were enriched with citric acid (first stage) and then with lactic acid and glycerol (second stage). By means of SEM and AFM microscopy, as well as ATR-FTIR analysis, the intensity of membrane-fouling was studied. The colloidal fouling and bio-fouling caused a more than two-fold decrease in the permeate flux during microfiltration of the broth. This pre-treatment stage was effective, and a permeate turbidity of less than 0.2 NTU was obtained. However, the nanofiltration membranes exhibited a 30 % flux decline over the course of the process, mainly due to the organic fouling.     

Identification of mouse brain proteins after two-dimensional electrophoresis and electroblotting by microsequence analysis and amino acid composition analysis

Two-dimensional electrophoretic separation and immobilization of proteins onto inert membranes for subsequent amino acid sequence and amino acid composition analysis is described as a rapid procedure for the identification or characterization of proteins from complex mixtures. This method avoids the drawbacks of classical purification and isolation methods which involve time-consuming operations with low resolution and, often, insufficient yields. Excellent overall yields of minor amounts (in the low microgram range) using this method allow for sequence determination of yet inaccessible proteins. Solubilized cell proteins of mouse brain were separated by high resolution two-dimensional electrophoresis and electroblotted onto a siliconized glass fiber membrane. The immobilized proteins were stained with Coomassie Brilliant Blue R-250, and twelve proteins spots were then submitted to both Edman degradation and amino acid analysis. Proteins were identified by comparison of the experimentally determined amino acid composition with a dataset derived from the Protein Identification Resource (PIR) protein sequence database. Eight out of twelve proteins tested were identified by amino acid analysis and confirmed by N-terminal sequence determination.     

Properties of polyurethane-polystyrene graft copolymer membranes used for separating water-ethanol mixtures

Polyurethane prepolymers (PU) based on hydrophilic poly(ethylene glycol) (PEG), hydroxypropyl acrylic acid (HPA), 2,4-toluene diisocyanate (TDI), and butanediol (BDO) were prepared by one-step polymerization with butanediol as the chain extender. Polyurethane-polystyrene graft copolymers (PU-g-PS) were synthesized by free radical copolymerization of PU with styrene (ST), 2,2′-azobisisobutyronitrile (AIBN) was used as initiator and toluene as solvent. Experimental results showed that the crosslinked membranes of PU-PS graft copolymers could be used for separating ethanol-water mixtures. The highest value of the separation factor (α) of the crosslinked separation membranes can reach 17.3. Scanning electron microscopy (SEM) and differential scanning calorimetry (DSC) were used to characterize the properties of PU-PS crosslinked membranes.     

A new direct current method for resistance measurements of ionic membranes and its application to composite membranes

The present paper deals with a D.C. method for measuring membrane electrical resistance making use of a constant current pulse, automated measuring equipment and taking into account polarization phenomena. The potential transient, subsequent to application of current, is analyzed, and membrane electrical resistance is determined by extrapolation to zero time of the potential differences measured after the current step. Experimental results obtained with commercial ion-exchange membranes were in good agreement with those computed from the diffusion equation. The method developed gives values with a standard deviation lower than traditional techniques. As an application example, the current pulse technique allows measurement of electrical resistance of composite silicafouled membranes in the electrodialysis process in both current directions. In this case the different response of the system, after the current pulse, gives useful information about membrane structure and ion distribution on the double layers surrounding the membrane.     

A ruler for determining the position of proteins in membranes

Both the oxygen diffusion rate and the oxygen solubility vary with depth into the interior of biological membranes. The product of these two gradients generates a single gradient, a permeability gradient, which is a smooth continuous function of the distance from the center of the membrane. Using electron paramagnetic resonance and the spin-probe method, the relaxation gradient of oxygen, which is directly proportional to the permeability gradient, is the quantity that can be directly measured in membranes under physiological conditions. The gradient obtained provides a calibrated ruler for determining the membrane depth of residues either from loop regions of membrane-binding proteins or from the membrane-exposed residues of transmembrane proteins. We have determined the relaxation gradient of oxygen in zwitterionic and anionic phospholipid membranes by attaching a single nitroxide probe to a transmembrane alpha-helical polypeptide at specific residues. The peptide ruler was used to determine the depth of penetration of the calcium-binding loops of the C2 domain of cytosolic phospholipase A(2). The positions of selected residues of this membrane-binding protein that penetrate into the membrane, determined using this ruler, compared favorably with previous determinations using more complex methods. The relaxation gradient constrains the possible values of the membrane-dependent oxygen concentration and the oxygen diffusion gradients. The average oxygen diffusion coefficient is estimated to be at least 2-fold smaller in the membrane than that in water.