Probing the compound (E)-5-(diethylamino)-2-[(4-methylphenylimino)methyl]phenol mainly from the point of tautomerism in solvent media and the solid state by experimental and computational methods

In this study, the molecular structure and spectroscopic properties of (E)-5-(diethylamino)-2-[(4-methylphenylimino)methyl]phenol were characterized experimentally by X-ray diffraction, FT-IR and UV-vis spectroscopic techniques and computationally by DFT method. It is concluded on the basis of X-ray diffraction and FT-IR analyses that the title compound exists in enol form in the solid state. UV-vis spectra of the title compound were recorded in different organic solvents to investigate the dependence of tautomerism on solvent types. The tautomerism-solvent relation was also studied by computational methods to have more insight on structural properties. The geometry optimization of the title compound in gas phase was performed by using DFT (B3LYP) method with 6-311G(d,p) basis set. The geometry optimizations in solvent media were carried out at the same theory level by the polarizable continuum model (PCM). In the calculation of excitation energies, TD-DFT calculations were carried out in both gas and solution phases. The computational investigation of non-linear optical properties indicates that the title compound has a good second order nonlinear optical property. The thermodynamic properties were obtained in the range of 100-500 K.     

Computational and experimental studies of the effect of substituents on the singlet-triplet energy gap in phenyl(carbomethoxy)carbene

The effect of aromatic substitution on the singlet-triplet energy gap in substituted phenyl(carbomethoxy)carbene (X-Ph-C-CO(2)CH(3), PCC) has been explored by time-resolved infrared (TRIR) spectroscopy and gas-phase computational methods. The ground state of para-substituted PCC is calculated to change from the triplet state in p-NO(2)-PCC (Delta G(ST) = 6.1 kcal/mol) to the singlet state in p-NH(2)-PCC (Delta G(ST) = -2.8 kcal/mol). The absence of solvent perturbation in the TRIR spectra of p-N(CH(3))(2)-PCC (which should have electronic properties similar to p-NH(2)-PCC) and parent PCC is consistent with their ground states lying > +/-2 kcal/mol from the next available electronic state, in line with the computational results. The observation of solvent perturbation in the TRIR spectra of p-OCH(3)-PCC and p-CH(3)-PCC implies that their ground states lie < +/-1 kcal/mol from their next available electronic state. This is in agreement with our computational results, which predict a gas-phase Delta G(ST) of -0.8 and 1.6 kcal/mol for p-OCH(3)-PCC and p-CH(3)-PCC as compared to Delta G(ST) values of -3.9 and -1.3 kcal/mol from polarizable continuum model (PCM) calculations with acetonitrile as a solvent. Gas-phase computational results for the meta- and ortho-substituted PCC species are also presented, along with selected linear free energy (LFE) relationships for the para and meta species.     

Methanol in its own gravy. A PCM study for simulation of vibrational spectra

For studying both hydrogen bond and dipole-dipole interactions between methanol molecules (self-association) the geometry of clusters of increasing numbers of methanol molecules (n = 1,2,3) were optimized and also their vibrational frequencies were calculated with quantum chemical methods. Beside these B3LYP/6-311G** calculations, PCM calculations were also done for all systems with PCM at the same quantum chemical method and basis set, for considering the effect of the liquid continuum on the cluster properties. Comparing the results, the measured and calculated infrared spectra are in good accordance.     

Thermal and solvent effects on the NMR and UV parameters of some bioreductive drugs

15N NMR chemical shifts and n-->pi* electronic transition energy for metronidazole (1) has been calculated and compared with experimental data. A detailed computational study of 1 is presented, with special attention to the performance of various theoretical methods for reproducing spectroscopic parameters in solution. The most sophisticated approach involves density functional based on the Car-Parrinello molecular dynamics simulations of 1 in aqueous solution (BP86 level) and averaging chemical shifts and deltaE(n-->pi*) over snapshots from the trajectory. In the NMR and UV calculations for these snapshots (performed at the B3LYP level), a small number of discrete water molecules are retained, and the remaining bulk solution effects are included via a polarizable continuum model (PCM). A good agreement with experiment is also obtained using static geometry optimization and NMR computation of pristine 1 employing a PCM approach. Further theoretical predictions are also reported for 17O NMR and deltaE(n-->pi*) of three hydroxycinnamic acid derivatives, which suggest that it is essential to incorporate the dynamics and solvent effects for NMR and UV calculations in the condensed phase.     

Density functional theory studies on the structure,spectra (FT-IR,FT-Raman,and UV) and first order molecular hyperpolarizability of 2-hydroxy-3-methoxy-N-(2-chloro-benzyl)-benzaldehyde-imine: Comparison to experimental data

The infrared and Raman spectra of 2-hydroxy-3-methoxy-N-(2-chloro-benzyl)-benzaldehyde-imine (HMCBI) have been recorded and analyzed. Density functional calculations at B3LYP/6-311++G(d,p) level were carried out to study the equilibrium geometries and vibrational spectra of HMCBI. The calculations revealed that the optimized geometry closely resembled the experimental XRD data. The calculated vibrational spectra were analyzed on the basis of the potential energy distribution (PED) of each vibrational mode, which allowed us to obtain a quantitative as well as qualitative interpretation of IR and Raman spectra. The ¹H nuclear magnetic resonance (NMR) chemical shifts of the molecule in the ground state were calculated by Gauge independent atomic orbital (GIAO) method. Information about size, shape, charge density distribution and site of chemical reactivity of the molecules has been obtained by mapping electron density isosurface with electrostatic potential surface. Based on optimized ground state geometries, the NBO analysis has been done to study donor–acceptor (bond–antibond) interactions. The TD-DFT method has been used to calculate energies, oscillator strengths of electronic singlet–singlet transitions and the absorption wavelengths. Solvent effects were considered using the polarizable continuum model (PCM). Good consistency is found between the calculated results and experimental data for the electronic absorption. The calculated first hyperpolarizability may be attractive for further studies on non-linear optical properties of materials.     

Electronic g-tensors of solvated molecules using the polarizable continuum model

We present the implementation of density functional response theory combined with the polarizable continuum model (PCM), enabling first principles calculations of molecular g-tensors of solvated molecules. The calculated g-tensor shifts are compared with experimental g-tensor shifts obtained from electron paramagnetic resonance spectra for a few solvated species. The results indicate qualitative agreement between the calculations and the experimental data for aprotic solvents, whereas PCM fails to reproduce the electronic g-tensor behavior for protic solvents. This failure of PCM for protic solvents can be resolved by including into the model those solvent molecules which are involved in hydrogen bonding with the solute. The results for the protic solvents show that the explicit inclusion of the solvent molecules of the first solvation sphere is not sufficient in order to reproduce the behavior of the electronic g-tensor in protic solvents, and that better agreement with experimental data can be obtained by including the long-range electrostatic effects accounted for by the PCM approach on top of the explicit hydrogen-bonded complexes.     

Solvent effect of aqueous media on properties of glycine: Significance of specific and bulk solvent effects,and geometry optimization in aqueous media

Geometries of the normal (N) and zwitterionic (Z) forms of glycine (gly) and their complexes gly.(H₂O)_n, n = 0–2, were fully optimized in gas phase and aqueous media, and transition states located between the corresponding N and Z forms. The geometry was also optimized and vibrational spectra calculated for the gly.(H₂O)₃ complex of Z glycine. Density functional theory at the B3LYP/AUG‐cc‐pVDZ level was employed for the geometry optimization calculations in gas phase and aqueous media while single point energy calculations were performed at the MP2/AUG‐cc‐pVDZ level in each case. Solvation in bulk water was treated using the polarizable continuum model (PCM). Zero‐point energy correction to total energy and thermal energy correction to enthalpy were obtained at the B3LYP/AUG‐cc‐pVDZ level of theory in both gas phase and bulk aqueous media and these corrections were also considered to be valid for the corresponding single point energy calculations performed at the MP2/AUG‐cc‐pVDZ level of theory. When geometries of the complexes of glycine with water molecules are optimized in aqueous media, the calculated properties are found to be appreciably modified with respect to those obtained by gas phase geometry optimization followed by solvation in aqueous media. For several vibrational frequencies, the agreement between the calculated and experimentally observed results is improved appreciably when both the specific and bulk solvent effects are considered in combination with full geometry optimization in aqueous media. For certain vibrational frequencies, mode assignments have also been modified. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Molecular and computational structure characterizations of (E)-2-ethoxy-6-[(4-fluorophenylimino)methyl]phenol

The (E)-2-ethoxy-6-[(4-fluorophenylimino)methyl]phenol compound was synthesized and characterized by X-ray Diffraction, IR and Electronic spectroscopy. X-Ray and IR results showed that the title compound preferred the enol form in solid state. UV-Vis absorption spectra of the title compound were recorded in different solvents. The results showed that the molecule existed only in enol form even in the solvent media. Electronic structure and spectroscopic properties of the title compound were investigated from calculative point of view. The gas phase geometry optimization was obtained based on X-ray geometry by DFT method with B3LYP applying 6-311G(d,p) basis set. Geometry optimizations in the solvent media were obtained with the same level of theory by the polarizable continuum model (PCM). TD-DFT calculations starting from the optimized geometry were made in both gas and solution phase to measure the excitation energies of enol and keto tautomers. Vibrational frequency and natural bond orbital analysis (NBO) were performed and the thermodynamic properties of the title compound were obtained at the optimized geometry with the same level of theory.     

Probing NMR parameters, structure and dynamics of 5-nitroimidazole derivatives. Density functional study of prototypical radiosensitizers

The 15N chemical shifts of metronidazole (1), secnidazole (2), nimorazole (3) and tinidazole (4), radiosensitizers based on the 5-nitroimidazole motif, are reported. A detailed computational study of 1 is presented, calling special attention to the performance of various theoretical methods in reproducing the 13C and 15N data observed in solution. The most sophisticated approach involves density functional-based Car-Parrinello molecular dynamics simulations (CPMD) of 1 in aqueous solution (BP86 level) and averaging chemical shifts over snapshots from the trajectory. In the NMR calculations for these snapshots (performed at the B3LYP level), a small number of discrete water molecules are retained, and the remaining bulk solution effects are included via a polarizable continuum model (PCM). A similarly good accord with experiment is obtained from much less involved, static geometry optimization and NMR computation of pristine 1 employing a PCM approach. Solvent effects on delta(15N), which are of the order of up to 20 ppm, are not due to changes in geometric parameters upon solvation, but arise from the direct response of the electronic wavefunction to the presence of the solvent, which can be represented by discrete molecules and/or the dielectric bulk.     

Coupled cluster theory with the polarizable continuum model of solvation

The environment may significantly affect molecular properties. Thus, it is desirable to account explicitly for these effects on the wave function and its derivatives, especially when the latter are evaluated with accurate methods, such as those belonging to coupled cluster (CC) theory. In this tutorial review, we discuss how to combine CC methods with the polarizable continuum model of solvation (PCM). We describe useful approximations that include the solvent response to the correlation and excited state equations while maintaining the computational cost comparable to in vacuo calculations. Although applied to PCM, the theoretical framework presented in this review is general and can be used with any polarizable embedding model. Representative applications of the CC-PCM method to ground and excited state properties of solvated molecules are presented, and comparisons with experiment, and between the full and approximate schemes are discussed.     

Theoretical study of the conformational and optical properties of a fluorescent dye. A step toward modeling sensors grafted on polymer structures

The conformational and photophysical properties in toluene solution of a naphthoic acid derivative, namely 4-naphthoyloxy-1-methoxy-2,2,6,6-tetramethylpiperidine, which can simulate a pendant active group grafted on apolar polymer structures, were studied by means of calculations based on the density functional theory (DFT) and its time-dependent extension (TD-DFT) coupled to a polarizable continuum model (PCM) of the surrounding medium. The conformational landscape was exhaustively explored and the conformers responsible for the absorption and emission spectra were identified through well established computational procedures based on a tuned combination of functional (PBE0) and basis set (N07D) which reproduced satisfactorily the experimental absorption and emission wavelengths.     

Preparation, characterization, molecular and electronic structures, TDDFT, and TDDFT/PCM study of the solvatochromism in cyanovinylferrocenes

Cis and trans isomers of ferrocene-based donor-acceptor assemblies, Fc-C(I)=CH(I), Fc-C(I)=CH(CN), and Fc-C(CN)=CH(CN) (Fc is ferrocene), along with the Fc-C(CN)=C(CN)2 complex have been prepared and characterized by 1H, 13C, gHMQC, and gHMBC NMR spectra, IR, UV-vis, and MCD spectroscopy methods, as well as elemental analyses. The oxidation potentials, investigated by cyclic voltammetry, of all donor-acceptor assemblies are in agreement with the electron-acceptor strength of the substituents attached to the ferrocene core. X-ray crystallography studies of cis and trans isomers of Fc-C(I)=CH(CN) and Fc-C(CN)=CH(CN) reveal a significant rotational flexibility of the cyanovinyl group, which was explained on the basis of semiempirical PM3 calculations. Electronic structures and solvatochromic properties of all complexes were investigated by UV-vis spectroscopy, density functional theory (DFT), time-dependent DFT (TDDFT), and polarized continuum model (PCM) TDDFT approaches. The calculated vertical excitation energies and magnitudes of solvatochromic effect are consistent with the experimental data and clearly suggest the dominance of metal-to-ligand charge-transfer bands in the visible region of the UV-vis spectra for all complexes.     

Dissolving metal reduction of acetylenes: a computational study

The two-electron, two-proton reduction of alkynes to trans-alkenes has been studied computationally using the polarizable continuum regime to model liquid ammonia, the solvent in which such reductions are generally carried out. Two computational approaches have been used. In one, the energies of species (alkyne, radical anion, vinyl radical, vinyl anion, dianion, and alkene) that are implicated as possible participants in the reduction are obtained using high level ab initio single-point computations under the polarizable continuum model (PCM) conditions. In the other approach, the same species are surrounded by ten explicit ammonia molecules before undergoing the same single-point PCM analysis. It has been shown that the two methods provide nearly identical results in terms of relative energies. Other findings include the probable bent nature of the radical anion species in ammonia, the likelihood that the trans stereochemistry of the reduction is determined at the vinyl anion stage, and the elimination of a dianion as a possible species that determines the stereochemical result. Various observations relating the solvent effects of ammonia are made relative to known gas-phase properties of the species studied.     

Time dependent density functional theory calculations for electronic circular dichroism spectra and optical rotations of conformationally flexible chiral donor-acceptor dyad

Twelve conformations of a chiral donor-acceptor (charge-transfer) dyad and six conformations of its dimer complex were structurally optimized by using the Kohn-Sham density functional theory (BLYP/TZV2P) incorporating a recently developed empirical correction scheme that uses C6/R6 potentials for van der Waals interactions (DFT-D). Subsequent time-dependent DFT calculations with BH-LYP and B3-LYP functionals (with triple-zeta basis set) were performed to obtain theoretical circular dichroism (CD) spectra. The experimental CD spectra obtained independently were properly reproduced by averaging the calculated spectra of individual conformers according to a Boltzmann population derived from single-point SCS-MP2 energies. The optical rotations of the monomer were also calculated by using the same functionals with an aug-cc-pVDZ basis set. Dielectric continuum solvation models (COSMO) applied to correct the relative energies from the isolated molecule calculations resulted in conformer distributions that piled the same or even poorer level of agreement with the experimental CD spectrum. Our results clearly show the advantage of the DFT-D method for the geometry optimization of large systems with donor-acceptor interactions and the TD-DFT/BH-LYP calculations for reproducing the experimental CD spectra. As compared with the calculated optical rotations, the wealthy information embedded in the experimental/calculated CD spectra is requisite for the configurational and/or conformational analyses of relatively large and flexible chiral organic molecules in solution.     

2-(2,5-二羟基苯基)-5-甲基-2,5-二氢吡咯并[3,4]富勒烯的合成和电子光谱的理论研究

利用丙氨酸和2,5-二羟基苯甲醛所形成的亚胺叶立德与C₆₀发生1,3-偶极环加成反应, 合成并分离、纯化制备了一种新的C₆₀吡咯烷衍生物: 2-(2-5-二羟基苯基)-5-甲基-2,5-二氢吡咯并[3,4]富勒烯. 通过¹H NMR, FT-IR, UV-vis和元素分析确定了其结构, 研究了体系的电化学和荧光性质. 采用密度泛函的方法, 在B3LYP/6-31G水平上对分子的几何构型进行了优化, 得到稳定的几何构型; 运用INDO/S方法计算了化合物的电子光谱, 计算结果434.2 nm与实验值432.0 nm基本一致.     

Structure of pyridoxine solvates in aqueous solution from quantum-chemical calculations and NMR spectroscopy

A geometric optimization is performed for the neutral, zwitterionic, and protonated forms of pyridoxine in vacuum and in water with a solvent within the polarizable continuum model (PCM). The structural parameters are optimized for pyridoxine complexes in the neutral and zwitterionic forms with 4-10 water molecules. An analysis is performed of how the number of molecules of the solvent set by the model affects the agreement between the calculated and experimental NMR spectra.