Conformation of α,α,α′-Trisubstituted Cyclododecanone

Ten α,α,α′-trisubstituted cyclododecanones were synthesized and characterized by elemental analyses, infrared, 1^H NMR and 13^C NMR spectra, and X-ray diffraction. NMR data could not give conformational information clearly, but some of their ring skeleton conformations of cyclododecanone moiety were showed to remain the unchanged [3333]-2-one conformation with little distortion, while the others were changed to the [3324]-2-one conformation in their crystal structures. These are consistent with the results of molecular mechanics calculation with Sybyl 6.9 software and Tripos force field, and semi-empirical quantum calculation with AM 1 method in Gaussian 98 software. Two geminal substituting groups are located at α-corner carbon atom, and the third group is at α-side-exo carbon atom in both conformations. Both [3333]-2-one and [3324]-2-one conformations are present in a dynamic equilibrium in the solution, but only one preferred conformation exists in the crystal solid.     

17O, 13C and 1H NMR and IR spectral study of crowded ketones: possible intramolecular C—H···O interactions

Unusual behaviour was observed in the study of the ¹⁷O, ¹³C and ¹H NMR and IR spectra of crowded (1‐adamantyl)alkyl ketones. As the size of the alkyl substituent is increased, abnormal upfield chemical shifts in the ¹³C NMR and downfield shifts in the ¹⁷O NMR of the carbonyl group, as well as downfield shifts in the ¹H NMR of the adamantyl γ'‐protons, are found. In the IR spectrum, the ν_C?O stretching frequencies of the ketones with bulky substituents show considerable red shifts. Correlation of the NMR shifts with the number of γ‐carbon atoms of the alkyl substituents and comparison with the IR results indicated that there is an intramolecular through‐space CH···O interaction in crowded ketones. This was supported by the results of ab initio calculations. Copyright © 2002 John Wiley & Sons, Ltd.     

A conformational NMR analysis of methymycin aglycones: complete and unambiguous assignments of stereochemically diverse glycosylated methymycin analogs by 1D and 2D NMR techniques and molecular modeling

The ¹H and ¹³C NMR spectra of 10‐deoxymethynolide (1), 8.9‐dihydro‐10‐deoxymethynolide (2) and its glycosylated derivatives (3–9) were analyzed using gradient‐selected NMR techniques, including 1D TOCSY, gCOSY, 1D NOESY (DPFGSENOE), NOESY, gHMBC, gHSQC and gHSQC‐TOCSY. The NMR spectral parameters (chemical shifts and coupling constants) of 1–9 were determined by iterative analysis. For the first time, complete and unambiguous assignment of the ¹H NMR spectrum of 10‐deoxymethynolide (1) has been achieved in CDCl₃, CD₃OD and C₆D₆ solvents. The ¹H NMR spectrum of 8,9‐dihydro‐10‐deoxymethynolide (2) was recorded in CDCl₃, (CD₃)₂CO and CD₃OD solutions to determine the conformation. NMR‐based conformational analysis of 1 and 2 in conjugation with molecular modeling concluded that the 12‐membered ring of the macrolactones may predominantly exist in a single stable conformation in all solvents examined. In all cases, a change in solvent caused only small changes in chemical shifts and coupling constants, suggesting that all glycosylated methymycin analogs exist with similar conformations of the aglycone ring in solution. Copyright © 2013 John Wiley & Sons, Ltd.     

Conformational studies on (17alpha,20Z)-21-(X-Phenyl)-19-norpregna-1, 3,5(10),20-tetraene-3,17beta-diols using 1D and 2D NMR spectroscopy and GIAO calculations of (13)C shieldings

Differences in agonist responses of the novel estrogen receptor ligands (17alpha,20Z)-(p-methoxyphenyl)vinyl estradiol (1), (17alpha, 20Z)-(o-alpha,alpha,alpha-trifluoromethylphenyl)vinyl estradiol (2), and (17alpha,20Z)-(o-hydroxymethylphenyl)vinyl estradiol (3) led us to investigate their solution conformation. In competitive binding assay studies, we observed that several phenyl-substituted (17alpha, 20E/Z)-(X-phenyl)vinyl estradiols exhibited significant estrogen receptor binding, but with variation (RBA (1) = 20; RBA (2) = 23; RBA (3) = 140 where estradiol RBA = 100) depending on the phenyl substitution pattern. Because the 17alpha-phenylvinyl substituent interacts with the key helix-12 of the ligand binding domain, we considered that differences in the preferred conformation of 1-3 could account for their varying binding affinity. 2D NMR experiments at 500 MHz allowed the complete assignment of the (13)C and (1)H spectra of 1-3. The conformations of these compounds in solution were established by 2D and 1D NOESY spectroscopy. A statistical approach of evaluating contributing conformers of 1-3 from predicted (13)C shifts correlated quite well with the NOE data. The 17alpha substituents of 1 and 2 exist in similar conformational equilibria with some differences in relative populations of conformers. In contrast, the 17alpha substituent of 3 exists in a different conformational equilibrium. The similarity in solution conformations of 1 and 2 suggests they occupy a similar receptor volume, consistent with similar RBA values of 20 and 23. Conversely, the different conformational equilibria of 3 may contribute to the significant binding affinity (RBA = 140) of this ligand.     

J(77Se,1H) and J(77Se,13C) couplings of seleno‐carbohydrates obtained by 77Se satellite 1D 13C spectroscopy and 77Se selective HR‐HMBC spectroscopy

Seleno‐carbohydrates are those in which the oxygen of the glycosidic bond or the hydroxyl group is artificially replaced with selenium. This substitution changes ¹H and ¹³C chemical shifts and produces spin coupling constants involving ⁷⁷Se. Coupling constants, such as ^2‐3J(⁷⁷Se, ¹H), are likely to be useful for conformational analyses of glycans because such couplings are never observed in natural glycans. Several papers have discussed the relationship between ^2‐3J(⁷⁷Se, ¹H) and conformation; however, only few reports describe ^1‐3J(⁷⁷Se, ¹³C), which could also be useful. Here, we obtain ⁷⁷Se coupling constants of seleno‐carbohydrates from ⁷⁷Se‐selective HR‐HMBC and ⁷⁷Se satellites in 1D ¹³C spectra and examine their conformations using the Newman projection scheme.     

Etude en Résonance Magnétique Nucléaire du Carbone-13 de N-Aryl Pyrazolines-2 Diversement Substituées. Effets de Substituant et Etude Conformationnelle

The ¹³C chemical shifts of 1-phenyl-2-pyrazoline and 25 N-nitrophenyl-2-pyrazolines, with different substituents on the heterocyclic ring, have been assigned. These values are discussed as a function of the steric and electronic nature of the various substituents. The steric effects produced conformational modifications, both in the nitrophenyl and 2-pyrazoline moieties, which explain some of the chemical shifts.     

Photooxygenation of Pregnanes

The course of the singlet‐oxygen reaction with pregn‐17(20)‐enes and pregn‐5,17(20)‐dienes was studied to compare the reactivity of the two alkene moieties present in some steroid families. Thus, from commercially available (3β,5α)‐hydroxy‐androstan‐17‐one and (3β)‐3‐hydroxyandrost‐5‐en‐17‐one, the following 3‐{[(tert‐butyl)dimethylsilyl]oxy}‐substituted, 17(20)‐unsaturated pregnanes were prepared (see Fig. 1): (3β,5α)‐21‐norpregn‐17(20)‐ene 1 ; (3β,5α,17Z)‐pregn‐17(20)‐ene 2 , (3β,5α,16α,17E)‐pregn‐17(20)‐en‐16‐ol 3 , (16β,5α,17E)‐pregn‐17(20)‐en‐16‐ol 4 , (3β,5α,16β,17E)‐pregn‐17(20)‐en‐16‐ol acetate 5 , (3β,16α)‐21‐norpregna‐5,17(20)‐dien‐16‐ol 6 , (3β,16α,17E)‐pregna‐5,17(20)‐dien‐16‐ol 7 , (3β,17Z)‐pregna‐5,17(20)‐diene 8 , (3β,17E)‐pregna‐5,17(20)‐dien‐21‐ol 9 and (3β,17E)‐5,17(20)‐dien‐21‐ol acetate 10 . The oxygenated products (see Fig. 2) obtained from 1 – 10 and ¹O₂, generated by irradiation of Rose Bengal in ³O₂‐saturated pyridine solution, were characterized by ¹H‐, ¹³C‐NMR, and MS (EI, FAB, HR‐EI, ESI‐ and UV‐MALDI‐TOF) data. Major products were those formed by the ene reaction involving as intermediates the corresponding hydroperoxides and the cyclic tautomers of the allylic hydroperoxides, i.e., the corresponding oxiranium oxide‐like intermediate (Scheme 5).     

ss‐NMR and single‐crystal X‐ray diffraction in the elucidation of a new polymorph of bischalcone (1E,4E)‐1,5‐bis(4‐fluorophenyl)penta‐1,4‐dien‐3‐one

We report a new polymorph of (1E,4E)‐1,5‐bis(4‐fluorophenyl)penta‐1,4‐dien‐3‐one, C₁₇H₁₂F₂O. Contrary to the precedent literature polymorph with Z′ = 3, our polymorph has one half molecule in the asymmetric unit disordered over two 50% occupancy sites. Each site corresponds to one conformation around the single bond vicinal to the carbonyl group (so‐called anti or syn). The other half of the bischalcone is generated by twofold rotation symmetry, giving rise to two half‐occupied and overlapping molecules presenting both anti and syn conformations in their open chain. Such a disorder allows for distinct patterns of intermolecular C—H…O contacts involving the carbonyl and anti‐oriented β‐C—H groups, which is reflected in three ¹³C NMR chemical shifts for the carbonyl C atom. Here, we have also assessed the cytotoxicity of three symmetric bischalcones through their in vitro antitumour potential against three cancer cell lines. Cytotoxicity assays revealed that this biological property increases as halogen electronegativity increases.     

Accurate assignments in PMR and <Superscript>13</Superscript>C NMR spectra of anhydrolycoctonine using 2D spectroscopy

Resonances in PMR and ¹³C NMR spectra of anhydrolycoctonine were fully assigned based on a series of 1D and 2D NMR experiments. The conformation of ring A was concluded to be a distorted boat with H-1β from a comprehensive analysis of chemical shifts, SSCC, and the NOE for two possible conformations. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 267–269, May–June, 2008.     

Structural determination of abutilins A and B,new flavonoids from Abutilon pakistanicum,by 1D and 2D NMR spectroscopy

Two new flavonoids, abutilin A and B, were isolated from the chloroform soluble fraction of Abutilon pakistanicum and their structures assigned from ¹H and ¹³C NMR spectra, DEPT and by 2D COSY, HMQC and HMBC experiments. Ferulic acid (3), (E)‐cinnamic acid (4), 5‐hydroxy‐4′,6,7,8‐tetramethoxyflavone (5), kaempferol (6), luteolin (7) and luteolin 7‐O‐β‐D ‐glucopyranoside (8) have also been reported from this species. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis of 5α, 13α, 14α-Androstan-16-One and 5α, 13β, 14β—Androstan-16-One Using a Novel 17–16 Carbonyl Transposition

In the course of current work on the conformational analysis of cis-hydrindanones¹, we required 5α, 13α, 14α and 5α, 13β, 14β-androstan-16-one 5 and 10 the C and D rings of which provide rigid models of the two conformations of cis-hydrindan-2-one.     

Temperature effects on 13C n.m.r. chemical shifts of normal alkanes and some line r and branched 1-alkenes

¹³C n.m.r. chemical shifts of a number of 1,1-disubstituted ethylenes are presented. Moreover, effects of changing temperatures on the ¹³C n.m.r. chemical shifts of some of these compounds as well as of three normal alkanes are given. These variations in chemical shifts are attributed to varying amounts of sterically induced shifts in the different conformational equilibria. In addition to the well-known 1,4 interaction between two alkyl groups shielding effects on the carbon atoms of the connecting bonds are also proposed. No definite explanation of this effect is presented at this time. It is further shown that no simple correlations exist between ¹³C n.m.r. chemical shifts and calculated total charge densities at this level. Instead, the experimental results in 1-alkenes are rationalized by assuming a linear dependence of the ¹³C n.m.r. chemical shifts of C-1 and C-2 via rehybridizations on changes in bond angles for small skeletal deformations caused by steric interactions. These changes in geometries, as well as conformational energies in three 1-alkenes, were calculated by means of VFF calculations. Finally. upfield shifts for both C-2 and C-4 are proposed for those conformations of 1-alkenes in which the C-3? C-4 group interacts with the p_z-orbital of C-2.     

Z and E rotamers of N‐formyl‐1‐bromo‐4‐hydroxy‐3‐methoxymorphinan‐6‐one and their interconversion as studied by 1H/13C NMR spectroscopy and quantum chemical calculations

N‐Formyl‐1‐bromo‐4‐hydroxy‐3‐methoxymorphinan‐6‐one (compound 2 ), an important intermediate in the NIH Opiate Total Synthesis, presumably exists as a mixture of two rotamers (Z and E) in both CHCl₃ and DMSO at room temperature due to the hindered rotation of its N‐C18 bond in the amide moiety. By comparing the experimental ¹H and ¹³C chemical shifts of a single rotamer and the mixture of compound 2 in CDCl₃ with the calculated chemical shifts of the geometry optimized Z and E rotamers utilizing density functional theory, the crystalline rotamer of compound 2 was characterized as having the E configuration. The energy barrier between the two rotamers was also determined with the temperature dependence of ¹H and ¹³C NMR coalescence experiments, and then compared with that from the reaction path for the interconversion of the two rotamers calculated at the level of B3LYP/6‐31G*. Detailed geometry of the ground state and the transition states of both rotamers are given and discussed. Copyright © 2012 This article is a US Government work and is in the public domain in the USA.     

13C NMR shifts and conformations of substituted indans

¹³C NMR spectra of indan derivatives bearing substituents in the 1, 2, 5 and 6 positions are reported and assigned by LIS measurements and other techniques. Epimeric indanes bearing vicinal oxygen and phenyl or benzyl substituents show ring carbon shielding in the cis relative to the trans isomers, which is compared with corresponding cyclopentane shifts, and indicates the predominance of envelope conformations with pseudoaxial oxygen substituents for the cis isomers. Acetylation shifts show consistently larger shielding at C-β for the trans compounds. Introduction of oxygen at C-5 leads to asymmetric shielding effects at the ortho carbon atoms as soon as there is a substituent in the para position which can participate in mesomeric forms.     

NMR Analysis of Substituent Effect of Arymethylene‐malononitriles and Malonates

A series of arylmethylene‐malononitriles and malonates were prepared from the condensation of arylaldehydes and malononitriles and malonates, respectively. The function of substituents on the carbon‐13 chemical shifts of the Cα and Cβ was studied. The correlation between Hammett's constants and the substituent chemical shifts demonstrates a negative slope for Cα and positive for C_β (1, C_α:ρ = ‐3.877, r² = 0.979; C_β:ρ = 6.899, r² = 0.984; 2, C_α:ρ = ‐2.817, r² = 0.926; C_β:ρ = 5.355, r² = 0.950). The large slopes for C_β for both series compounds resemble our previous studies on the arylcyclopropanes. The relaxation time of both proton and carbon are slightly affected by the size of substituents. In the viscosity study, an inverse‐law relationship between relaxation time and viscosity was observed.     

Conformations and 13C NMR shifts in tetralins

Force field (MM2) calculations, ¹³C NMR substituent-induced shifts (SIS) and epimeric shift differences (ESD) indicate a preference for equatorial substituents in the 2-position, but equal eq/ax populations in the 1-position of tetralines. Similar conclusions are reached from Yb(fod)₃-induced shifts, which are also used for signal assignments, e.g. in 1-tetralone. Configurational assignments are possible for 1,2- and 1,3-epimers (ESD up to 4 ppm) but, in line with the non-discriminating eq/ax conformations at C-I, not for 1,4-epimers (ESD<0.5 ppm). More than 50 compounds were measured, including functional derivatives which show regular SIS for substituents in the aromatic moiety only for m- and p-carbon atoms. OMe, but not OH or OAc substituents, induce o-carbon SIS varying from ?11 to ?19 ppm. Conversion of 1-hydroxytetralin to esters induces shielding variations at the aromatic carbon atoms which indicate the electrostatic origin of derivatization shifts.     

Carbon-13 magnetic resonance studies of cyclic compounds. 2. Carbon-13 chemical shift parameters for equatorial and axial substituents in cyclohexane: The substituents methyl,ethyl, isopropyl,methoxy and phthalimido

Carbon-13 chemical shift parameters for equatorial and axial substituents in cyclohexane are reported for methyl, ethyl, isopropyl, methoxy and phthalimido substituents. The usefulness of the alkyl parameters is demonstrated by the agreement between calculated and observed ¹³C shifts for trans-1,4-dialkylcyclohexanes (alkyl = Me, Et, i-Pr) and for both conformations of cis-1,4-dialkylcyclohexanes (alkyl = Me, Et, i-Pr).     

17O NMR studies of ortho‐substituent effects in substituted phenyl tosylates

¹⁷O NMR spectra for 35 ortho‐, para‐, and meta‐substituted phenyl tosylates (phenyl 4‐methylbenzenesulfonates), 4‐CH₃‐C₆H₄SO₂OC₆H₄‐X, at natural abundance in acetonitrile at 50 °C were recorded. The ¹⁷O NMR chemical shifts, δ(¹⁷O), of the sulfonyl (SO₂) and the single‐bonded phenoxy (OPh) oxygens for para and meta derivatives correlated well with dual substituent parameter treatment using the Taft inductive, σ_I, and resonance, σº_R, constants. The influence of ortho substituents on the sulfonyl oxygen and the single‐bonded phenoxy oxygen chemical shifts, δ(¹⁷O), was found to be nicely described by the Charton equation: δ(¹⁷O)_ortho = δ(¹⁷O)_H + ρ_Iσ_I + ρ_Rσ°_R + δE_s^B when the data treatment was performed separately for electron‐donating +R substituents and electron‐attracting ?R substituents. Electron‐attracting meta and para substituents in the phenyl moiety caused deshielding while the electron‐donating meta, para and ortho +R substituents produce shielding effects on the sulfonyl (SO₂) and single‐bonded phenoxy (OPh) oxygens. The influence of ortho inductive and resonance effects in the case of +R substituents was found to be approximately twice higher than the corresponding influence from the para position. Due to the steric effect of ortho substituents a decrease in shielding of the oxygens at the sulfonyl group (δE_s^B > 0, E_s^B < 0) was detected. Copyright © 2012 John Wiley & Sons, Ltd.     

Conformations of the Nine‐Membered Ring in the B‐Nor‐5,10‐secosteroids. X‐Ray and NMR Analysis

The conformations of (Z)‐ and (E)‐5‐oxo‐B‐nor‐5,10‐secocholest‐1(10)‐en‐3β‐yl acetates ( 2 and 3 , resp.) were examined by a combination of X‐ray crystallographic analysis and NMR spectroscopy, with emphasis on the geometry of the cyclononenone moiety. The ¹H‐ and ¹³C‐NMR spectra showed that the unsaturated nine‐membered ring of (E)‐isomer 3 in C₆D₆ and (D₆)acetone solution exists in a sole conformation of type B ₁ , which is similar to its solid‐state conformation. The (Z)‐isomer 2 in C₆D₆, CDCl₃, and (D₆)acetone solution, however, exists in two conformational forms of different families, with different orientation of the carbonyl group, the predominant form (85%) corresponding to the conformation of type A ₁ and the minor (15%) to the conformation A ₂ present also in the crystalline state. In this solid‐state conformations of the nine‐membered ring of both compounds, the 19‐Me and 5‐oxo groups are ‘β’‐oriented. The NMR analysis suggests that the nine‐membered ring of 4 has a conformation of type C ₁ in CDCl₃ solution.     

Godavarin K: a New Limonoid with an Oxygen Bridge between C(1) and C(29) from the Godavari Mangrove Xylocarpus moluccensis

Godavarin K ( 1 ), a new limonoid with an oxygen bridge between C(1) and C(29), was obtained from seeds of an Indian mangrove, Xylocarpus moluccensis, together with a known tetranortriterpene, 6‐de(acetyloxy)‐7‐deacetylchisocheton compound E (=(5α,7α,13α,17α)‐7‐hydroxy‐4,4,8‐trimethyl‐3‐oxocarda‐1,14‐dienolide; 2 ). The structure of godavarin K was established on the basis of spectroscopic data. In addition, the confusion of ¹H‐ and ¹³C‐NMR data for compound 2 in previous literature was clarified.