Experimental and theoretical study of the intramolecular C–H···N and C–H···S hydrogen bonding effects in the 1H and 13C NMR spectra of the 2‐(alkylsulfanyl)‐5‐amino‐1‐vinylpyrroles: a particular state of amine nitrogen

In the ¹H NMR spectra of the 1‐vinylpyrroles with amino‐ and alkylsulfanyl groups in 5 and 2 positions, an extraordinarily large difference between resonance positions of the H_A and H_B terminal methylene protons of the vinyl group is discovered. Also, the one‐bond ¹J(C_β,H_B) coupling constant is surprisingly greater than the ¹J(C_β,H_A) coupling constant in pyrroles under investigation, while in all known cases, there was a reverse relationship between these coupling constants. These spectral anomalies are substantiated by quantum chemical calculations. The calculations show that the amine nitrogen lone pair is removed from the conjugation with the π‐system of the pyrrole ring so that it is directed toward the H_B hydrogen. These factors are favorable to the emergence of the intramolecular C–H_B???N hydrogen bonding in the s‐cis(N) conformation. On the other hand, the spatial proximity of the sulfur to the H_B hydrogen provides an opportunity of the intramolecular C–H_B???S hydrogen bonding in the s‐cis(S) conformation. Presence of the hydrogen bond critical points as well as ring critical point for corresponding chelate ring revealed by a quantum theory of atoms in molecules (QTAIM) approach confirms the existence of the weak intramolecular C–H???N and C–H???S hydrogen bonding. Therefore, an unusual high‐frequency shift of the H_B signal and the increase in the ¹J(C_β,H_B) coupling constant can be explained by the effects of hydrogen bonding. Copyright © 2013 John Wiley & Sons, Ltd.     

Hydrogen‐bonded networks in crystals of 1‐(diaminomethylene)thiouron‐1‐ium perchlorate,hydrogen sulfate,dihydrogen phosphate and dihydrogen arsenate

Crystals of the title compounds, namely 1‐(diaminomethylene)thiouron‐1‐ium perchlorate, C₂H₇N₄S⁺·ClO₄⁻, 1‐(diaminomethylene)thiouron‐1‐ium hydrogen sulfate, C₂H₇N₄S⁺·HSO₄⁻, 1‐(diaminomethylene)thiouron‐1‐ium dihydrogen phosphate, C₂H₇N₄S⁺·H₂PO₄⁻, and its isomorphic relative 1‐(diaminomethylene)thiouron‐1‐ium dihydrogen arsenate, C₂H₇N₄S⁺·H₂AsO₄⁻, are built up from a nonplanar 1‐(diaminomethylene)thiouron‐1‐ium cation and the respective anion linked together via N—H...O hydrogen bonds. Both arms of the cation are planar, but they are twisted with respect to one another around the central N atom. Ionic and extensive hydrogen‐bonding interactions join oppositely charged units into layers in the perchlorate, double layers in the hydrogen sulfate, and a three‐dimensional network in the dihydrogen phosphate and dihydrogen arsenate salts. This work demonstrates the usefulness of 1‐(diaminomethylene)thiourea in crystal engineering for the formation of supramolecular networks with acids.     

Polysulfonylamine. CLXVI [1] Kristallstrukturen von Metall‐di(methansulfonyl)amiden. 15 [1] Die isotypen Kristallstrukturen von Ammonium‐ und Caesium‐dimesylamid: Kristallographische Kongruenz zwischen Wasserstoffbrücken N—H···O/N und Metall‐Ligand‐Bindungen Cs—O/N

Polysulfonylamines. CLXVI. Crystal Structures of Metal Di(methanesulfonyl)amides. 15. The Isotypic Crystal Structures of Ammonium and Cesium Dimesylamide: Crystallographic Congruency of Hydrogen Bonds N—H···O/N and Metal‐Ligand Interactions Cs—O/N The ammonium salt NH₄[N(SO₂CH₃)₂] and its previously reported cesium analogue Cs[N(SO₂CH₃)₂] are isostructural (monoclinic, space group P2₁/n, Z = 4, V at —140 °C: 0.761 and 0.832 nm³ respectively). The cesium ion adopts an irregular (O₆N)‐heptacoordination by forming close contacts to one (O, N)‐chelating, one (O, O)‐chelating and three κ¹O‐bonding anions, whereas in the ammonium‐based structure each of the seven Cs—O/N interactions is perfectly mimicked by an N—H···O/N hydrogen‐bond component. To this effect, three N—H donors are engaged in asymmetric three‐centre bonds, the fourth in a moderately strong and approximately linear two‐centre bond. The crystal packings consist of anion monolayers that intercalate planar zigzag rows of cations propagating around symmetry centres (Cs···Cs alternatingly 422.5 and 487.5 pm, Cs···Cs···Cs 135.7°; N···N alternatingly 397.4 and 474.1 pm, N···N···N 136.1°). Each cation row is surrounded by and bonded to four translation‐generated anion stacks, and each anion stack connects two cation rows. The net effect is that the packings display congruent three‐dimensional networks of metal‐ligand bonds or hydrogen bonds, respectively. Moreover, close C—H···O/N interanion contacts consistent with weak hydrogen bonding are observed in both structures.     

The O–H···O, O–H···N and C–H···O hydrogen bonds in 1,4-dimethylpiperazine mono-betaine monohydrate

1,4-Dimethylpiperazine mono-betaine (1-carboxymethyl-1,4-dimethylpiperazinium inner salt, MBPZ) crystallizes as monohydrate. The crystals are orthorhombic, space group Pccn. Two MBPZ molecules and two water molecules form a cyclic oligomer, (MBPZ·H₂O)₂. The O–H···O and O–H···N hydrogen bonds are of 2.769(1) and 2.902(1) Å, respectively. The dimers interact with the neighboring molecules through the C–H···O hydrogen bonds of 3.234(1) Å. The piperazine ring assumes a chair conformation with the N(4)–CH₃ and N⁺(1)–CH₂COO⁻ groups in the equatorial position and the N⁺(1)–CH₃ group in the axial one. The FTIR spectrum is compared with that calculated by the B3LYP/6-31G(d,p) level of theory.     

New coordination modes in potassium edta salts: K2[H2edta]·2H2O,K3[Hedta]·2H2O and K4[edta]·3.92H2O

Three potassium edta (edta is ethylenediaminetetraacetic acid, H₄Y) salts which have different degrees of ionization of the edta anion, namely dipotassium 2‐({2‐[bis(carboxylatomethyl)azaniumyl]ethyl}(carboxylatomethyl)azaniumyl)acetate dihydrate, 2K⁺·C₁₀H₁₄N₂O₈²⁻·2H₂O, (I), tripotassium 2,2′‐({2‐[bis(carboxylatomethyl)amino]ethyl}ammonio)diacetate dihydrate, 3K⁺·C₁₀H₁₃N₂O₈³⁻·2H₂O, (II), and tetrapotassium 2,2′,2′′,2′′′‐(ethane‐1,2‐diyldinitrilo)tetraacetate 3.92‐hydrate, 4K⁺·C₁₀H₁₂N₂O₈⁴⁻·3.92H₂O, (III), were obtained in crystalline form from water solutions after mixing edta with potassium hydroxide in different molar ratios. In (II), a new mode of coordination of the edta anion to the metal is observed. The HY³⁻ anion contains one deprotonated N atom coordinated to K⁺ and the second N atom is involved in intramolecular bifurcated N—H...O and N—H...N hydrogen bonds. The overall conformation of the HY³⁻ anions is very similar to that of the Y⁴⁻ anions in (III), although a slightly different spatial arrangement of the –CH₂COO⁻ groups in relation to (III) is observed, whereas the H₂Y²⁻ anions in (I) adopt a distinctly different geometry. The preferred synclinal conformation of the –NCH₂CH₂N– moiety was found for all edta anions. In all three crystals, the anions and water molecules are arranged in three‐dimensional networks linked via O—H...O and C—H...O [and N—H...O in (I) and (II)] hydrogen bonds. K...O interactions also contribute to the three‐dimensional polymeric architecture of the salts.     

CB‐TE2A+·Cl−·3H2O: a short intermolecular hydrogen bond between zwitterionic bicyclo[6.6.2]tetraamine macrocycles

1,4,8,11‐Tetraazabicyclo[6.6.2]hexadecane‐4,11‐diacetic acid (CB‐TE2A) is of much interest in nuclear medicine for its ability to form copper complexes that are kinetically inert, which is beneficial in vivo to minimize the loss of radioactive copper. The structural chemistry of the hydrated HCl salt of CB‐TE2A, namely 11‐carboxymethyl‐1,8‐tetraaza‐4,11‐diazoniabicyclo[6.6.2]hexadecane‐4‐acetate chloride trihydrate, C₁₆H₃₁N₄O₄⁺·Cl⁻·3H₂O, is described. The compound crystallized as a positively charged zwitterion with a chloride counter‐ion. Two of the amine groups in the macrocyclic ring are protonated. Formally, a single negative charge is shared between two of the carboxylic acid groups, while one chloride ion balances the charge. Two intramolecular hydrogen bonds are observed between adjacent pairs of N atoms of the macrocycle. Two intramolecular hydrogen bonds are also observed between the protonated amine groups and the pendant carboxylate groups. A short intermolecular hydrogen bond is observed between two partially negatively charged O atoms on adjacent macrocycles. The result is a one‐dimensional polymeric zigzag chain that propagates parallel to the crystallographic a direction. A second intermolecular interaction is a hydrogen‐bonding network in the crystallographic b direction. The carbonyl group of one macrocycle is connected through the three water molecules of hydration to the carbonyl group of another macrocycle.     

Hydro­gen bonding in ethyl­ene­di­ammonium bis­(hydrogen malonate) mono­hydrate

In the title compound, C₂H₁₀N₂²⁺·2C₃H₃O₄^?·H₂O, the hydrogen malonate anion has an intramolecular O—H?O hydrogen bond of 2.430 (2) Å. The water mol­ecule lies on a twofold axis and connects the anions into pairs through hydrogen bonds of 2.734 (1) Å. The ethyl­enedi­ammonium cation lies across an inversion centre. Each of the ammonium protons is involved in hydrogen bonding to an anion or a water mol­ecule [N?O 2.815 (2)–2.875 (2) Å].     

Kristallstruktur und Schwingungsspektrum von (H2NPPh3)2[SnCl6]·2CH3CN

Crystal Structure and Vibrational Spectrum of (H₂NPPh₃)₂[SnCl₆]·2CH₃CN Single crystals of (H₂NPPh₃)₂[SnCl₆]·2CH₃CN ( 1 ) were obtained by oxidative addition of tin(II) chloride with N‐chloro‐triphenylphosphanimine in acetonitrile in the presence of water. 1 is characterized by IR and Raman spectroscopy as well as by a single crystal structure determination: Space group , Z = 2, lattice dimensions at 193 K: a = 1029.6(1), b = 1441.0(2), c = 1446.1(2) pm, α = 90.91(1)°, β = 92.21(1)°, γ = 92.98(1)°, R₁ = 0.0332. 1 forms an ionic structure with two different site positions of the [SnCl₆]^2? ions. One of them is surrounded by four N‐hydrogen atoms of four (H₂NPPh₃)⁺ ions, four CH₃CN molecules form N–H···N≡C–CH₃ contacts with the other four N‐hydrogen atoms of the cations. Thus, 1 can be written as [(H₂NPPh₃)₄(CH₃CN)₄(SnCl₆)]²⁺[SnCl₆]^2?.     

Ammonium N‐acetyl‐l‐threoninate and methyl­ammonium N‐acetyl‐l‐threoninate

Ammonium N‐acetyl‐l ‐threoninate, NH₄⁺·C₆H₁₀NO₄^?, and methyl­ammonium N‐acetyl‐l ‐threoninate, CH₆N⁺·­C₆H₁₀NO₄^?, crystallize in the orthorhombic P2₁2₁2₁ and monoclinic P2₁ space groups, respectively. The two crystals present the same packing features consisting of infinite ribbons of screw‐related N‐acetyl‐l ‐threoninate anions linked together through pairs of hydrogen bonds. The cations interconnect neighbouring ribbons of anions involving all the nitrogen‐H atoms in three‐dimensional networks of hydrogen bonds. The hydrogen‐bond patterns include asymmetric `three‐centred' systems. In both structures, the Thr side chain is in the favoured (g^?g⁺) conformation.     

GIAO,DFT, AIM and NBO analysis of the N?H···O intramolecular hydrogen‐bond influence on the 1J(N,H) coupling constant in push–pull diaminoenones

In the series of diaminoenones, large high‐frequency shifts of the ¹H NMR of the N? H group in the cis‐position relative to the carbonyl group suggests strong N? H···O intramolecular hydrogen bonding comprising a six‐membered chelate ring. The N? H···O hydrogen bond causes an increase of the ¹J(N,H) coupling constant by 2–4 Hz and high‐frequency shift of the ¹⁵N signal by 9–10 ppm despite of the lengthening of the relevant N? H bond. These experimental trends are substantiated by gauge‐independent atomic orbital and density functional theory calculations of the shielding and coupling constants in the 3,3‐bis(isopropylamino)‐1‐(aryl)prop‐2‐en‐1‐one (12) for conformations with the Z‐ and E‐orientations of the carbonyl group relative to the N? H group. The effects of the N? H···O hydrogen‐bond on the NMR parameters are analyzed with the atoms‐in‐molecules (AIM) and natural bond orbital (NBO) methods. The AIM method indicates a weakening of the N? H···O hydrogen bond as compared with that of 1,1‐di(pyrrol‐2‐yl)‐2‐formylethene (13) where N? H···O hydrogen bridge establishes a seven‐membered chelate ring, and the corresponding ¹J(N,H) coupling constant decreases. The NBO method reveals that the LP(O) →σ*_{N? H} hyperconjugative interaction is weakened on going from the six‐membered chelate ring to the seven‐membered one due to a more bent hydrogen bond in the former case. A dominating effect of the N? H bond rehybridization, owing to an electrostatic term in the hydrogen bonding, seems to provide an increase of the ¹J(N,H) value as a consequence of the N? H···O hydrogen bonding in the studied diaminoenones. Copyright © 2010 John Wiley & Sons, Ltd.     

C?H···N and C?H···O intramolecular hydrogen bonding effects in the 1H, 13C and 15 N NMR spectra of the configurational isomers of 1‐vinylpyrrole‐2‐carbaldehyde oxime substantiated by DFT calculations

According to the ¹H, ¹³C and ¹⁵N NMR spectroscopic data and DFT calculations, the E‐isomer of 1‐vinylpyrrole‐2‐carbaldehyde adopts preferable conformation with the anti‐orientation of the vinyl group relative to the carbaldehyde oxime group and with the syn‐arrangement of the carbaldehyde oxime group with reference to the pyrrole ring. This conformation is stabilized by the C? H···N intramolecular hydrogen bond between the α‐hydrogen of the vinyl group and the oxime group nitrogen, which causes a pronounced high‐frequency shift of the α‐hydrogen signal in ¹H NMR (～0.5 ppm) and an increase in the corresponding one‐bond ¹³C–¹H coupling constant (ca 4 Hz). In the Z‐isomer, the carbaldehyde oxime group turns to the anti‐position with respect to the pyrrole ring. The C? H···O intramolecular hydrogen bond between the H‐3 hydrogen of the pyrrole ring and the oxime group oxygen is realized in this case. Due to such hydrogen bonding, the H‐3 hydrogen resonance is shifted to a higher frequency by about 1 ppm and the one‐bond ¹³C–¹H coupling constant for this proton increases by ～5 Hz. Copyright © 2008 John Wiley & Sons, Ltd.     

Intermolecular complexes of nido-C<Subscript>2</Subscript>B<Subscript>3</Subscript>H<Subscript>7</Subscript> with HF and LiH molecules: the theoretical studies,bonding properties and natural bond orbital (NBO) analysis

The changes in stabilization energy upon the formation of intermolecular hydrogen, dihydrogen and lithium bond complexes between C₂B₃H₇, LiH and HF have been investigated using MP2 method with aug-cc-pVDZ basis set. The interaction of HF with nido-C₂B₃H₇ could occur through the formation of B–H^?δ···^+δH–F, C–H^+δ···F^?δ–H and B–C···H–F classical and non-classical hydrogen bonds. The B–C bonds in backbone of the C₂B₃H₇ as electron donor interact with σ* orbital of HF as electron acceptor. Also interaction of LiH with nido-C₂B₃H₇ resulted in B–C···Li–H and B–H···LiH lithium bonds as well as C–H···H–Li dihydrogen bond complexes. In some of these complexes, LiH interacts with B–C bonds. Results are indicating that more stable complexes belong to interaction of HF and LiH with backbone of the nido-C₂B₃H₇. The AIM and NBO methods were used to analyze the intermolecular interactions; also the electron density at the bond critical point and the charge transfer of obtained complexes were studied.     

Strukturen ionischer Di(arensulfonyl)amide. 8. Natrium‐bis[di(4‐fluorbenzolsulfonyl)amido‐N]argentat: Ein Heterobimetallkomplex mit lamellarer Schichtstruktur und kurzen Zwischenschichtkontakten C–H···F–C

Structures of Ionic Di(arenesulfonyl)amides. 8. Sodium Bis[di(4‐fluorobenzenesulfonyl)amido‐N]argentate: A Heterobimetallic Complex Exhibiting a Lamellar Layer Structure and Short C–H···F–C Interlayer Contacts Na[Ag{N(SO₂–C₆H₄–4‐F)₂}₂] (monoclinic, C2/c, Z′ = 1/2) is the first heterobimetallic representative in a well‐documented class of layered inorgano‐organic solids where the inorganic component is comprised of metal cations and coordinating N(SO₂)₂ groups and the outer regions are formed by the aromatic rings of the di(arenesulfonyl)amide entities, which adopt a folded conformation approximating to mirror symmetry. The inversion‐symmetric bis(amido)argentate unit of the novel compound displays an exactly linear N–Ag–N core and short Ag–N bonds of 217.55(17) pm (at ?140 °C); the coordination number of the silver ion is extended to 2 + 6 by four internal and two external Ag···O secondary interactions. The polar lamella is constructed from rows of Na⁺ ions located on twofold axes, alternating with bis(amido)argentate strands reinforced by Ag···O interactions and weak C–H···O hydrogen bonds; Na⁺ is embedded in an O₆ environment. Adjacent layers are cross‐linked via short C–H···F–C contacts suggestive of weak hydrogen bonding enhanced by cooperativity.     

Supramolecular hydrogen‐bonded networks in adeninium phenylacetate phenylacetic acid monohydrate and adeninium 3‐carboxypropionate monohydrate

In the title compounds, C₅H₆N₅⁺·C₈H₇O₂⁻·C₈H₈O₂·H₂O, (I), and C₅H₆N₅⁺·C₄H₃O₄⁻·H₂O, (II), the adeninium cations form N—H...O hydrogen bonds with their anion counterparts and adeninium–adeninium self‐association base pairs with the R₂²(10) motif (Bernstein et al., 1995). A complete hydrogen‐bonding motif analysis is presented. Conventional hydrogen bonds lead to layer structures in (I) and to two‐dimensional infinite polymeric ribbons in (II). C—H...O interactions are found in both structures, while weak π–π stacking interactions are only observed in (I).     

The structure of a valinomycin–hexaaquamagnesium trifluoromethanesulfonate compound

Valinomycin is a naturally occurring cyclic dodecadepsipeptide with the formula cyclo‐[d ‐HiVA→l ‐Val →l ‐LA→l ‐Val]₃ (d ‐HiVA is d ‐α‐hydroxyisovaleic acid, Val is valine and LA is lactic acid), which binds a K⁺ ion with high selectively. In the past, several cation‐binding modes have been revealed by X‐ray crystallography. In the K⁺, Rb⁺ and Cs⁺ complexes, the ester O atoms coordinate the cation with a trigonal antiprismatic geometry, while the six amide groups form intramolecular hydrogen bonds and the network that is formed has a bracelet‐like conformation (Type 1 binding). Type 2 binding is seen with the Na⁺ cation, in which the valinomycin molecule retains the bracelet conformation but the cations are coordinated by only three ester carbonyl groups and are not centrally located. In addition, a picrate counter‐ion and a water molecule is found at the center of the valinomycin bracelet. Type 3 binding is observed with divalent Ba²⁺, in which two cations are incorporated, bridged by two anions, and coordinated by amide carbonyl groups, and there are no intramolecular amide hydrogen bonds. In this paper, we present a new Type 4 cation‐binding mode, observed in valinomycin hexaaquamagnesium bis(trifluoromethanesulfonate) trihydrate, C₅₄H₉₀N₆O₁₈·[Mg(H₂O)₆](CF₃SO₃)₂·3H₂O, in which the valinomycin molecule incorporates a whole hexaaquamagnesium ion, [Mg(H₂O)₆]²⁺, via hydrogen bonding between the amide carbonyl groups and the hydrate water H atoms. In this complex, valinomycin retains the threefold symmetry observed in Type 1 binding, but the amide hydrogen‐bond network is lost; the hexaaquamagnesium cation is hydrogen bonded by six amide carbonyl groups. ¹H NMR titration data is consistent with the 1:1 binding stoichiometry in acetonitrile solution. This new cation‐binding mode of binding a whole hexaaquamagnesium ion by a cyclic polypeptide is likely to have important implications for the study of metal binding with biological models under physiological conditions.     

Hydrogen bonding in two salts of 3‐methylthio‐4‐(propargylthio)quinoline

In 3‐methyl­thio‐4‐(propargyl­thio)­quinolinium chloride monohydrate, C₁₃H₁₂NS₂⁺·Cl^?·H₂O, and 3‐methyl­thio‐4‐(propargyl­thio)­quinolinium tri­chloro­acetate, C₁₃H₁₂­NS₂⁺·­C₂Cl₃O₂^?, the terminal alkyne group forms C[triple‐bond]C—H?O hydrogen bonds of favourable geometry. The conformation of the flexible propargyl­thio group is different in the two structures.     

Influence of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH3 complexes

The effect of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH₃ (X = F, Cl, Br, OH, H, Me) and NCH···NH₃ complexes were investigated by quantum chemical calculations. Ab initio calculations were performed using MP2 method with a wide range of basis sets. With tacking into account the BSSE and ZPVE, the values of BEs decrease. Replacement of the nonparticipatory hydrogen atom of HCCH by the electronegative atoms (F, Cl, and Br), lead to the BEs increases. The BE corresponding to the replacement of the nonparticipatory hydrogen atom of HCCH by the OH and CH₃ groups decreases. A far greater enhancement of the interaction energy arises from replacement of HCCH by the more acidic HCN. The natural bond orbital analysis and the Bader's quantum theory of atoms in molecules were also used to elucidate the interaction characteristics of these complexes. The electrostatic nature of H‐bond interactions is predicted from QTAIM analysis. In addition, the relationship between the isotropic and anisotropic chemical shifts of the bridging hydrogen and binding energy of complexes as well as electron density at N···H BCPs were investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

The ternary complex 4‐(2‐pyridyl)pyridinium–3,5‐di­nitro­benzoate–3,5‐di­nitro­benzoic acid (1/1/1)

In the title ternary complex, C₁₀H₉N₂⁺·C₇H₃N₂O₆^?·C₇H₄N₂O₆, the pyridinium cation adopts the role of the donor in an intermolecular N—H?O hydrogen‐bonding interaction with the carboxyl­ate group of the 3,5‐di­nitro­benzoate anion. The mol­ecules of the ternary complex form molecular ribbons perpendicular to the b direction, which are stabilized by one N—H?O, one O—H?O and five C—H?O intermolecular hydrogen bonds. The ribbons are further interconnected by three intermolecular C—H?O hydrogen bonds into a three‐dimensional network.     

NEt4OH·5H2O containing hydro­xide–water layers

In the title compound, tetraethyl­ammonium hydro­xide pentahydrate, C₈H₂₀N⁺·OH^?·5H₂O, layers of approximately hexagonally close‐packed NEt₄⁺ cations and anionic layers of hydro­xide and water mol­ecules are stacked alternately along the b axis. All hydro­xide and water H atoms are in ordered positions, giving rise to a network of hydrogen bonds [O?O 2.633 (1)–2.947 (2) Å] with four‐ and six‐membered rings. The hydro­xide ion accepts four hydrogen bonds from four water mol­ecules but does not act as a proton donor.     

Studies of two different types of intramolecular C–H···F–C interactions from polyfluorinated diiodometal(II) diimine complexes

The X‐ray crystal structures of the polyfluorinated complexes [5,5′‐bis(HCF₂CF₂CF₂CF₂CH₂OCH₂)‐2,2′‐bpy]MI₂ ( 55‐8F‐PtI ₂ and 55‐8F‐PdI ₂ where M = Pt and Pd, respectively) were obtained. These two structures are found to show not only two different types of intramolecular, six‐membered cyclic C–H···F–C interactions (F₂C–H···F–C and HC–H···F–C) as important structural features but also alternating fluorinated and non‐fluorinated layers. The F₂C–H···F–C interactions, which are close to the metal core, are much better structurally characterized in this type of complexes with fluorous ponytails at the 5,5′ positions than those previously reported at the 4,4′ positions. The molecular planes of (bpy)MI₂ are extended by self‐matching, using two C–H···I hydrogen bonds and one C–H···F–C blue‐shifting hydrogen bond. The F₂C–H···F–C hydrogen bonds interact at the supramolecular level such that one polyfluorinated ponytail of the title compounds is transoid without an intramolecular C–H···F–C interaction, while the other polyfluorinated ponytail is cisoid with an intramolecular C–H···F–C interaction. Why one ponytail is cisoidal while the other is transoidal will be explained. Furthermore, the second type of C–H···F–C interactions involving the methylene H atom has been identified for the first time. In addition, these two metal structures are studied by density functional theory (DFT).