Force-constant-decayed anisotropic network model: An improved method for predicting RNA flexibility

RNA is an important biological macromolecule, which plays an irreplaceable role in many life activities. RNA functions are largely determined by its tertiary structure and the intrinsic dynamics encoded in the structure. Thus, how to effective extract structure-encoded dynamics is of great significance for understanding RNA functions. Anisotropic network model (ANM) is an efficient method to investigate macromolecular dynamical properties, which has been widely used in protein studies. However, the performance of the conventional ANM in describing RNA flexibility is not as good as that on proteins. In this study, we proposed a new approach, named force-constant-decayed anisotropic network model (fcd-ANM), to improve the performance in investigating the dynamical properties encoded in RNA structures. In fcd-ANM, nucleotide pairs in RNA structure were connected by springs and the force constant of springs was decayed exponentially based on the separation distance to describe the differences in the inter-nucleotide interaction strength. The performance of fcd-ANM in predicting RNA flexibility was evaluated using a non-redundant structure database composed of 51 RNAs. The results indicate that fcd-ANM significantly outperforms the conventional ANM in reproducing the experimental B-factors of nucleotides in RNA structures, and the Pearson correlation coefficient between the predicted and experimental nucleotide B-factors was distinctly improved by 21.05% compared to the conventional ANM. Fcd-ANM can serve as a more effective method for analysis of RNA dynamical properties.     

Photoionization of a charged exciton in a GaAs/GaAlAs corrugated quantum well

Binding energies of a charged exciton as a function of well width of a GaAs/GaAlAs corrugated quantum well are investigated. The calculations have been performed by the variational method based on a two parametric trial wave function within a single band effective mass approximation. We have also included the effect of nonparabolicity of the conduction band of GaAs. We study the spectral dependence of the charged exciton in a GaAs/GaAlAs corrugated quantum well as a function of well width. The photoionization cross section for the charged exciton placed at the center of the quantum well is computed as a function of normalized photon energy. The cross-section behavior as a function of incident energy is entirely different in the two cases of radiation being x-direction (along the growth direction) or z-direction. The interband emission energy as a function of well width is calculated and the dependence of the photoionization cross section on photon energy is carried out for the charged excitons. The resulting spectra are brought out for light polarized along and perpendicular to the growth direction. The results show that the charged exciton binding energy, interband emission energy and the photoionization cross section depend strongly on the well width. Our results are compared with the other existing literature available.     

Nuclear fragmentation: sampling the instabilities of binary systems

We derive stability conditions of asymmetric nuclear matter (ANM) and discuss the relation to mechanical and chemical instabilities of general two-component systems. We show that the chemical instability may appear as an instability of the system against isoscalarlike rather than isovectorlike fluctuations if the interaction between the two constituent species has an attractive character as in the case of ANM. This leads to a new kind of liquid-gas phase transition, of interest for fragmentation experiments with radioactive beams.     

The isotropic-to-nematic transition in a two-dimensional fluid of hard needles: a finite-size scaling study

Laser dependence of binding energy on exciton in a GaAs quantum well wire embedded on an AlGaAs wire within the single band effective mass approximation is investigated. Laser dressed donor binding energy is calculated as a function of wire radius with the renormalization of the semiconductor gap and conduction valence effective masses. We take into account the laser dressing effects on both the impurity Coulomb potential and the confinement potential. The valence-band anisotropy is included in our theoretical model by using different hole masses in different spatial directions. The spatial dielectric function and the polaronic effects have been employed in a GaAs/AlGaAs quantum wire. The numerical calculations reveal that the binding energy is found to increase with decrease with the wire radius, and decrease with increase with the value of laser field amplitude, the polaronic effect enhances the binding energy considerably and the binding energy of the impurity for the narrow well wire is more sensitive to the laser field amplitude.     

Sur la contribution des differents porteurs à la zone de charge d'espace d'un semiconducteur multivallée

We study, in the case of the parabolic approximation, the space charge of a two-valley conduction band semiconductor; the electrons associated to these valleys are supposed to have different effective masses. By using a non-degenerate distribution we analyse the contribution of the different carriers to the space charge and the effect of surface band bending, temperature, effective masses, dope and type of material. We point out that the space charge can be governed by either type of carrier or both. By comparing the results with those given by a single valley model, we show the incidence of the initial hypothesis on the value and evolution of the space charge with temperature and surface band bending. As an exemple, we study briefly n-type GaSb.     

Pion condensation in a dense neutrino gas

We argue that using an equilibrated gas of neutrinos it is possible to probe the phase diagram of QCD for finite isospin and small baryon chemical potentials. We discuss this region of the phase diagram in detail and demonstrate that for large enough neutrino densities a Bose–Einstein condensate of positively charged pions arises. Moreover, we show that for non-zero neutrino density the degeneracy in the lifetimes and masses of the charged pions is lifted.     

K-M Matrix and Fermion Masses

We discuss the relations between the K-M matrix and the masses of the quarks and leptons in the case of four generations, and give the exact expression of the K-M matrix in terms of the masses of quarks and leptons. The requirement that the theoretical and experimental values of the K-M ,matrix are consistent leads to an allowed range of quark masses of the fourth generation m_t'～400-1000 GeV, m_b'～50-130 GeV. In the leptonic sector.in comparison I with the neutrino oscillation experiments and supernova it seems that neutrino masses must have hierarchy as charged leptons.     

Extension of an empirical charged lepton mass relation to the neutrino sector

It is known that the charged lepton masses obey to high precision an interesting empirical relation (Koide relation). In turn, the light neutrino masses cannot obey such a relation. We note that if neutrinos acquire their mass via the seesaw mechanism, the empirical mass relation could hold for the masses in the Dirac and/or heavy Majorana mass matrix. Examples for the phenomenological consequences are provided. We furthermore modify the mass relation for light neutrino masses including their Majorana phases, and show that it can be fulfilled in this case as well, with interesting predictions for neutrinoless double beta decay.     

The Gaussian approximation for interacting charged scalar fields

The Gaussian effective-potential approach is used to explore the physics of charged theory in four space-time dimensions. We find and employ an appropriate trial system, parametrized by two effective masses, for obtaining an adequate Gaussian effective potential under conditions of the global U(1) symmetry and the finite temperature. A simple renormalization, accompanied by an explicit dimensional regularization, is employed. We find that the nontrivial approach arises from a bare coupling constant of a negative infinitesimal form, well known in the noncharged case as “precarious”. The behavior of this solution is discussed, and the symmetry breaking due to background charge density is discovered. Received: 11 January 1999 / Published online: 14 October 1999     

Strain Effect on the Absorption Threshold Energy of Silicon Circular Nanowires

In this work,the influence of strain on threshold energy of absorption in Silicon circular nanowires is investigated.For this purpose,we first have used the density functional theory(DFT) to calculate the electron and hole effective masses.Then,we have obtained absorption threshold energy with two different procedures,DFT and effective mass approximation(EMA).We have also obtained the band structures of Si nanowires both DFT and EMA.The results show that:i) the expansive strain increases the hole effective mass while compressive strain increases the electron effective mass,ii) the electron and hole effective masses reduce with decreasing the wire size,iii) the absorption threshold energy decreases by increasing strain for compressive and tensile strain and its behavior as a function of strain is approximately parabolic,iv) the absorption threshold energy(for all sizes) obtained using EMA is greater than the DFT results.     

Interparticle potential up to next-to-leading order for gravitational,electrical, and dilatonic forces

Long-range forces up to next-to-leading order are computed in the framework of the Einstein–Maxwell-dilaton system by means of a semiclassical approach to gravity. As has been recently shown, this approach is effective if one of the masses under consideration is significantly greater than all the energies involved in the system. Further, we obtain the condition for the equilibrium of charged masses in the system.     

New formulas and predictions for running fermion masses at higher scales in SM, 2HDM, and MSSM

Including contributions of scale-dependent vacuum expectation values, we derive new analytic formulas and obtain substantially different numerical predictions for the running masses of quarks and charged leptons at higher scales in the SM, 2HDM and MSSM. These formulas exhibit significantly different behaviours with respect to their dependence on gauge and Yukawa couplings from those derived earlier. At one-loop level, the masses of the first two generations are found to be independent of the Yukawa couplings of the third generation in all three effective theories in the small mixing limit. Analytic formulas are also obtained for the running of in 2HDM and MSSM. Other numerical analyses include a study of the third generation masses at high scales as functions of the low-energy values of and the SUSY scale GeV. Received: 1 October 2000 / Revised version: 11 January 2001 / Published online: 12 April 2001     

Survival of charged ρ condensation at high temperature and density

The charged vector ρ mesons in the presence of external magnetic fields at finite temperature T and chemical potential μ have been investigated in the framework of the Nambu-Jona-Lasinio model.We compute the masses of charged ρ mesons numerically as a function of the magnetic field for different values of temperature and chemical potential.The self-energy of the ρ meson contains the quark-loop contribution,i.e.the leading order contribution in 1/N_C expansion.The charged ρ meson mass decreases with the magnetic field and drops to zero at a critical magnetic field eB_c,which indicates that the charged vector meson condensation,i.e.the electromagnetic superconductor can be induced above the critical magnetic field.Surprisingly,it is found that the charged ρ condensation can even survive at high temperature and density.At zero temperature,the critical magnetic field just increases slightly with the chemical potential,which indicates that charged ρ condensation might occur inside compact stars.At zero density,in the temperature range 0.2 — 0.5 GeV,the critical magnetic field for charged ρ condensation is in the range of 0.2 — 0.6 GeV~2,which indicates that a high temperature electromagnetic superconductor might be created at LHC.     

The fermion mass matrices near a fixed point

The structure of the fermion mass matrices is investigated in the neighbourhood of an infrared fixed point with special emphasis on the mixing angles which determine the charged current couplings. We find that it is necessary to introduce a fourth generation of quarks whose masses are predicted. The mass of the top quark is close to 35 GeV. The solution for a two family problem is found, which predicts very small charged current couplings of the very heavy to the lighter quarks.     

The masses of charged leptons and quarks from superposition self-interference of their Dirac fields

Without Higgs field interaction, accurate pole mass values are obtained for the charged leptons and quarks from a Z₃-symmetric linear superposition self-interference of the Dirac fields in the effective free-field Lagrangian. The charged lepton and quark pole masses evidence the discrete Z₃ symmetry, the theoretical-experimental deviations δm/m are $ \mathcal{O} $ \mathcal{O} (10⁻⁵) for all three charged leptons, and the quark pole masses are in very satisfactory overall agreement with the experimental data.     

Signatures of gaugino mass non-universality in cascade Higgs production at the LHC

Supersymmetric cascades, involving charginos and neutralinos at various stages, contribute in a significant way to Higgs production at the LHC. We explore the nature of such cascades, completely relaxing the universality of the gaugino masses. It is found that the deviation from the scenario with universal gaugino masses would be reflected in the relative production rates for the lightest neutral Higgs and the charged Higgses.     

Radiative seesaw-type mechanism of fermion masses and non-trivial quark mixing

We propose a predictive inert two-Higgs doublet model, where the standard model (SM) symmetry is extended by \(S_{3}\otimes Z_{2}\otimes Z_{12}\) and the field content is enlarged by extra scalar fields, charged exotic fermions and two heavy right-handed Majorana neutrinos. The charged exotic fermions generate a non-trivial quark mixing and provide one-loop-level masses for the first- and second-generation charged fermions. The masses of the light active neutrinos are generated from a one-loop-level radiative seesaw mechanism. Our model successfully explains the observed SM fermion mass and mixing pattern.     

Simple mass relations for bulk fermions

Relations between bulk mass parameters for fermions propagating in higher dimensions are studied in analogy with the empirical mass relation for charged leptons. Masses of three generation of four-dimensional charged leptons are achieved from the bulk mass parameters of the same-order values. We find that the observed pattern of charged-lepton mass spectrum is accommodated approximately in a set of simple relations for bulk and physical masses.     

Light gauginos: Masses and instabilities

Within the framework of supergravity models without grand unified steps, we analyse in detail the consequences of the hypothesis that gauginos have no bare masses due to supergravity interactions. To this purpose we have made a one-loop calculation of wino, zino, and photino masses and a renormalization group improved two-loop calculation of the gluino masses.We find that: (i) the non-observation of charged winos is compatible either with a gravitino mass m ? 300 GeV or $\text{m ?3}\text{TeV}$; (ii) with a top quark mark of about 40 GeV, gluino and photino have very similar masses ranging from O(1 GeV) to O(20 GeV). In most cases consistency with cosmology requires that the gauge singlet needed to break the SU(2) × U(1) symmetry, be the lightest stable supersymmetric particle, with a mass as low as 1 keV or less. In such cases photino (or gluino) lifetimes into one photon (gluon) and one light singlet fermion (zerino), are typically between 10^?3 and 1 sec.We discuss the problem of the experimental detection of gauginos, which, according to the various options, require rather different approaches.     

Neutrino masses in the supersymmetric SU(3)C⊗SU(3)L⊗U(1)X model with right-handed neutrinos

The R-symmetry formalism is applied for the supersymmetric SU(3)_C⊗SU(3)_L⊗U(1)_X (3-3-1) model with right-handed neutrinos. For this kind of models, we study the generalization of the MSSM relation among R-parity, spin and matter parity. Discrete symmetries for the proton stable in this model are imposed, and we show that in such a case it is able to give leptons masses at only the tree level contributions required. A simple mechanism for the mass generation of the neutrinos is explored. We show that at the low-energy effective theory, the neutrino spectrum contains three Dirac fermions, one massless and two degenerate in mass. At the energy level where the mixing among them with the neutralinos is turned on, neutrinos obtain Majorana masses and correct the low-energy effective result which naturally gives rise to an inverted hierarchy mass pattern. This mass spectrum can fit the current data with minor fine-tuning. Consistent values for masses of the charged leptons are also given. In this model, the MSSM neutralinos and charginos can be explicitly identified in terms of the new constraints on masses which is not as in a supersymmetric version of the minimal 3-3-1 model. PACS 11.30.Er; 14.60.Pq; 14.60.-z; 12.60.Jv