X-ray crystallographic structure of the 9,10-dihydro-11,12bis[(1,3,3-trimethylureido)methyl]-9,10ethanoanthracene dihydrate

As a part of studies on MDR reversal agents, structure of the 9,10-dihydro-11,12-bis[(1,3,3-trimethylureido)methyl]-9,10-ethanoanthracene dihydrate is reported. Crystal data: C₂₆H₃₄N₄O₂ × 2 H₂O; mol. mass 470.60; monoclinic; space group: C2/c, a = 15.7492(6) Å; b = 7.2245(3) Å; c = 24.3442(10) Å; β = 106.795(2)^∘; V = 2651.73(22) ų; z = 4; dx = 1.179 mg/m³; μ = 0.64 mm⁻¹; F(000) = 1016; final R = 0.061 for 2501 reflections [I > 4 σ (I)]. Only half of the molecule is unique. The two nonplanar rings from the independent part of 9,10-dihydro-9,10-ethanoanthracene adopt a boat conformation. Crystallographic data demonstrate the “syn-syn” conformation of urea substituents in the molecule. In the crystal, water molecules are linked to the main species by H-bonds: O3′⋅sH12w—O1—H11w⋅sO3′(1.5 − x, 0.5 − y, 1 − z).     

Synthesis,structure and IR characterization of disodium tetra(9,10-dihydro-9-oxo-10-acridineacetato)zincate(II) bis(ethanol) heptahydrate

The synthesis, crystal structure and IR data are reported for Na₂[Zn(CMA)₄]·2EtOH·7H₂O, where CMA^– is the 9,10-dihydro-9-oxo-10-acridinacetate ion. The complex crystallizes in the monoclinic space group P2/n, with cell dimensionsa=17.335(9),b=8.440(5),c=21.875(12) Å, =91.94(5)°,Z=2. The structure was solved by direct methods and refined to a finalR value of 0.0363 for 3022 non-zero reflections. The Zn²⁺ ion occupies twofold axis and is coordinated to four carboxylate ligands, the ZnO₄ tetrahedron is considerably distorted with Zn–O distances of 1.978(3) and 1.961(3)Å. Each Na⁺ cation interacts with two water, one ethanol, and three carboxylate O atoms comprising distorted octahedron. The Zn²⁺ and Na⁺ cations are linked through monooxygen and syn-syn carboxylate bridges forming a trinuclear, mixed-metal cluster. The Zn...Na separation is 3.267(2)Å and Na...Na distance equals 3.520(2)Å. All oxygen bonded H-atoms are utilized in hydrogen bonds. The acridone rings overlap in the crystal with the 3.5 Å interlayer separations. The compound has been characterized by IR spectroscopy.     

The crystal and molecular structures of 9,10-dihydro-9, 10-ethano- and etheno-anthracenes

As part of our investigation on histamine receptor antagonists, the structures of two 9-10-dihydroanthracene derivatives are reported: 4: C₂₂H₂₈N₂; hexagonal, P6₁; a = 10.014(1), c = 34.556(7) Å; V = 3001.0(7)ų; and Z = 6; 9:C₁₉H₁₉N: triclinic, P-1; a = 8.427(2), b = 12.806(3), c = 15.292(3) Å, = 70.27(3), = 80.83(3), = 72.98(3)°; V = 1482.0(6) ų; and Z = 4. All non-aromatic rings in both molecules adopt a similar conformation. However, the three six-membered rings in the etheno-anthracene structure adopt a more regular boat form in spite of two sp² carbon bridged atoms.     

Stereochemistry of racemic hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-dienenickel(II) thiocyanate,C16H32N4Ni(SCN)2 · H2O

The diamagnetictrans-diene thiocyanate salt of the macrocyclic hexamethyl-1,4,8,11-tetraazacyclotetradecadienenickel(II) complex crystallizes in the triclinic system with unit cell dimensions:a = 7·334(4),b = 8·808(6),c = 21·04(2) Å; = 63·7(0·9), = 103·8(1·4), = 110·2(1·3) °; space groupP¯1;Z = 2. The positions of all 62 atoms of the formula unit C₁₆H₃₂N₄Ni(SCN)₂.H₂O have been determined and refined by least-squares methods toR= 0·071 for 3536 X-ray diffractometric reflections. The optical activity of the two amine groups yields a racemic isomer. The only local symmetry element of the macrocyclic complex is the twofold rotation axis with the N-H bonds oriented on the same side of the approximate ligand plane. Both the C(CH₃)₂ and the imine groups are in atrans-configuration in the ring. The space group ensures that the crystal is a racemate, containing equal numbers of both enantiomers. One of the (SCN)^– groups is at a distance Ni-S 3·28 Å, the other one is 4·65 Å. No rotational disorder of the CH₃ groups has been observed. The three C-H bonds of the CH₃ groups are in approximately antiprismatic orientations with respect to the three -bonds in the case of bonding to a C(sp³) atom. The average of the C(sp³)-C(sp²) bond lengths is 1·53 Å, and the mean value for the C(sp³)-C(sp²) bonds is 1·50 Å, with 3 = 0·03 to 0·04 Å. The distances N(sp²)-C(sp³) 1·47 Å and 1·48 Å are significantly longer than the bond lengths N(sp²)=C(sp²) of 1·28 and 1·30 Å.     

Molecular gears: Structures of (9,10-triptyceno) crown ethers

The incorporation of 9,10-triptycene unit in a crown ether is examined from a structural perspective. Insertion of a triptycene group into 18-crown-6 stretches the crown into an ellipse, as seen in structures presented here of 9,10-triptyceno-22-crown-6 and its thallium complex. Symmetric addition of two triptycene groups into 18-crown-6 results in the sterically congested bis(9,10-triptyceno)-26-crown-6, whose crown cavity is filled with the -clouds of two arene groups. The larger bis(9,10-triptyceno)-32-crown-8 is more sterically relaxed. The structures of these bis(triptyceno)crown ether molecules are the first with two triptycene groups simultaneously linked through their 9 and 10 positions, thereby forming a simple molecular gearing mechanism. The compound 9,10-triptyceno-22-crown-6 (1) crystallizes in the orthorhombic space group Pbca with a = 10.7962(7), b = 15.826(3), c = 31.147(5) Å, V = 5321.8(12) ų, and Z = 8; its complex with TlNO₃ (Tl-1) crystallizes in the monoclinic space group P2₁/c with a = 8.1884(14), b = 19.552(2), c = 20.575(4) Å, = 97.062(8)°, V = 3269.2(9) ų, and Z = 4; bis(9,10-triptyceno)-26-crown-6 (2) crystallizes in the triclinic space group P with a = 8.6488(11), b = 10.7718(12), c = 12.3324(12) Å, = 111.58(1), = 100.55(1), = 106.43(1)°, V = 970.3(5) ų, and Z = 1; and bis(9,10-triptyceno)-32-crown-8 (3) crystallizes in the orthorhombic space group Pna2₁ with a = 20.186(3), b = 8.558(2), c = 25.623(2) Å, V = 4426.2(14) ų, and Z = 4.     

First example of cocrystals of polymorphic maleic hydrazide

The first cocrystals of polymorphic maleic hydrazide with 3-methyluracil have been studied by X-ray diffraction methods. They crystallize in the orthorhombic system, space group Pmcn, a = 6.440 (1) Å, b = 6.974 (1) Å, c = 22.829 (11) Å, V = 1025.3 (5) ų, Z = 4. The asymmetric unit contains one molecule of each compound. Planar ribbons of the (1:1) molecular complex are obtained through the formation of O–H···O and O–H···N intermolecular hydrogen bonds, just forming a well-known R² ₂(8) supramolecular synthon. Supramolecular assemblies are then formed by weak C–H···O and C–H···N hydrogen bonds through adjacent antiparallel ribbons.     

Crystal structure of a one-dimensional ladder-shape CoII complex through hydrogen bonds with an amino-acid-like ligand 1,5-diazacyclooctane-N,N′-diacetate acid

The crystal structure of a one-dimensional ladder-shape complex [CoL(H₂O)]·2H₂O, (L being 1,5-diazacyclooctane-N,N-diacetate acid), has been determined by X-ray diffraction analysis: monoclinic, space group P2₁/c with a = 14.406(4) Å, b = 7.380(2) Å, c = 14.594(5) Å, = 112.685(2)°, M _r = 341.23, V = 1431.5(8) ų, Z = 4. The Co^II center is penta-coordinated by two O atoms of the carboxylic pendant arms, two nitrogen donors of the 1,5-diazacyclooctane (DACO) moiety, and a water molecule. The coordination geometry of Co^II could be described as a distorted square pyramid and the DACO backbone adopts a normal boat/chair conformation. The complex forms a one-dimensional ladder-shape structure through inter- and intra-molecular O—H···O hydrogen bonds.     

X-ray structure of 2,6-dimethoxy-7-methylpurine

The title compound (C₈H₁₀N₄O₂) is monoclinic, with a = 7.740(2), b = 17.044(7), c = 6.992(3) Å, = 100.60(1)°, and space group P2₁/c. Two O-methyl groups are coplanar with the pyrimidine ring. Whereas, the O(6)-methyl group is directed away from the imidazole ring toward the N(1) atom, the O(2)-methyl is pointed away from the N(1) atom toward the N(3) atom. Two intermolecular hydrogen bonds H(8)···N(1) and H(711)···O(2) of 2.48(2) and 2.58(3) Å make a linear arrangement of the molecules. The conformation of the O-methyl groups explains some results of thermal rearrangement of 2,6-dialkoxy-7-methylpurines and differences in alkylations of 2,4-dialkoxypyrimidines and 2,6-dialkoxy-7-methylpurines.     

Crystal structures of N-(2-aminoethyl)-1-naphthaleneneacetamide nitrate and hydrogen tartrate dihydrate

Nitrate (1): C₁₄H₁₇N₂O⁺·NO ₃ ^– , orthorhombic, Pbca,Z=8,a=9.6924(4),b=27.664(2) andc=10.8589(6)Å.Hydrogen tartrate dihydrate (2): C₁₄H₁₇N₂O⁺·C₄H₅O ₆ ^– ·2H₂O, orthorhombic, P2₁2₁2₁,Z=4,a=7.6703(5),b=7.9368(4) andc=31.953(2)Å. In the solid state, cation conformation differ due to molecular flexibility, very different anionic environments, and resultant hydrogen bonding patterns. Despite these differences, the two structures maintain the same separations (about 7.35 Å) of the two most distant potential pharmacophoric groups, i.e., the aromatic ring and the protonated amine group.     

Complexation with diol host compounds. Part 3. Molecular inclusion of 4-methylcyclohexanone and 2-methylcyclohexanone by the host,trans-9,10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene

The structures of the 12 molecular complexes oftrans-9,10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene with 4-methylcyclohexanone (1) and with 2-methylcyclohexanone (2) have been determined by X-ray crystallography. The crystal data are as follows: Compound (1):P2₂/c,a=8.838(2) Å,b=8.92(1) Å,c=20.879(8)=Å,=98.67(2)°,V=1627(2) ų,Z=2 andR=0.062 for 2201 unique MoK reflections; Compound (2):P¯1,a=8.917(3) Å,b=9.900(2) Å,c=11.250(4) Å,a=68.72(2)°,=64.39(3)°, =74.86(2)°,V=828.1(5) ų,Z=1 andR=0.098 for 2563 unique reflections. Both inclusion compounds exhibit O-HO=C hydrogen bonding interactions. The thermal properties of these compounds have been characterized by DTA and TGA thermograms.     

Rubidium hydrogen glutarate and ammonium hydrogen glutarate: X-ray studies of quasi-isostructural crystals involving very short hydrogen bonds

Rubidium and ammonium hydrogen glutarates (M ^{+ –}CO₂.C₃H₆.CO₂H) each crystallize with four molecules in orthorhombic unit cells of almost identical dimensions: (M = Rb)a = 18·55,b = 7·57,c = 5·29 Å; (M = NH₄)a= 18·59,b= 7·56,c= 5· 27 Å. They have very similar structures, but they are not isomorphous: space groupsCmma (Rb) andPmaa (NH₄).The crystal structures have been determined by three-dimensional X-ray analysis and refined with moderate precision. Both have infinite chains of glutarate residues, linked end-to-end by very short, symmetrical hydrogen bonds, with O···H···O = 2·40(2) (Rb) and O···H···O = 2·460(6) Å (NH₄).In the Rb salt, the glutarate residue has strict, crystallographicm symmetry. The difference in the NH₄ salt arises from small movements of the carbon and (especially) the oxygen atoms out of this symmetry plane. These are due to N-H···O bonding: two equivalent cations in the Rb salt, each making contact with eight oxygen atoms, become differentiated in the NH₄ salt by linkage to different sets of four oxygens.We wish to acknowledge financial support from the Science Research Council, and our indebtedness to Drs. J. G. Sime, K. W. Muir and others for help with KDF9 programs.     

Molecular structure of PhOCH2CH(OH)CH2OPh

The molecular structure of PhOCH₂CH(OH)CH₂OPh has been determined. The C—O—C—C—C—O—C backbone adopts an anti-anti-anti-anti conformation. Inter-molecular O—H ··· O hydrogen-bonding results in dimeric units which stack into zig-zag tapes. Crystal data: orthorhombic, Pbca, a = 10.383(1), b = 8.0532(0), c = 31.295(3) Å, V = 2616.8(3) ų, and Z = 8.     

Crystal structure, thermal analysis, and IR spectrometric investigation of 1,2-diammonium-2-methyl propane sulfate monohydrate

Chemical preparation, X-ray single crystal, thermal analysis, and IR spectrometric investigation of C₄H₁₄N₂SO₄·H₂O (denoted DAMPS) are described. DAMPS crystallizes in the orthorhombic system with P2₁2₁2₁ space group, a = 9.2726(4) Å, b = 9.5227(2) Å, c = 10.3807(4) Å, V = 916.62(6) ų, and Z = 4. The DAMPS structure is built up from inorganic chains parallel to the b axis and linked via Ow–H···O hydrogen bonds. These chains are interconnected by organic groups so as to build a three-dimensional arrangement.     

Crystal structure of 2-{(R)-1-hydroxy-1-[(2S)-1-tritylaziridin-2-yl] methyl}acrylate and spectroscopic properties of the (R,S) and (S,S) stereoisomers

The crystal and molecular structure of 2-{(R)-1-Hydroxy-1-[(2S)-1-tritylaziridin-2-y1] methy1}acrylate is described. Crystal data: C₂₆H₂₅NO₃, orthorhombic, space group P2₁2₁2₁, a = 9.6954(5), b = 13.1458(5), c = 16.7885(7) Å, V = 2139.8(2) ų, Z = 4. The (R,S) diastereomer shows an intramolecular hydrogen bonding N···H—O under formation of a five-membered ring with N···O distance of 2.664 Å. IR, ¹H NMR and ¹³C NMR data are discussed. The ¹H NMR of the (R,S) diastereomer shows a singlet- whereas the (S,S) diastereomer exhibits a doublet-pattern for the hydroxyl proton.     

Synthesis and crystal structure of indium arsenate and phosphate dihydrates with variscite and metavariscite structure types

The hydrothermal synthesis, crystal structure analysis, and spectroscopic studies of InPO₄·2H₂O (1) and InAsO₄·2H₂O (2) are reported. Compound 1 is isomorphic with metavariscite: monoclinic P2₁/n (No. 14), a = 5.4551(3) Å, b = 10.2293(4) Å, c = 8.8861(3) Å, = 91.489(4)°, Z = 4, and compound 2 is isomorphic with variscite: orthorhombic Pbca (No. 61), a = 10.478(1) Å, b = 9.0998(8) Å, c = 10.345(1) Å, Z = 8. Their three-dimensional frameworks are built of corner sharing InO₄(H₂O)₂ octahedra and MO₄ (M = P⁵⁺ or As⁵⁺) tetrahedra. The water molecules in both compounds have different environments and are involved in different types of hydrogen bonding. Infrared spectroscopy indicates that water molecules are true H₂O species.     

Crystal and molecular structure of calcium 2,4,6,8-cyclooctatetraene-1, 2-dicarboxylate dihydrate

Calcium 2,4,6,8-cyclooctatetraene-1,2-dicarboxylate dihydrate, CaC₈H₆(COO)₂. 2H₂O, crystallizes in the triclinic space groupP¯1 (C _i ¹) with unit cell dimensions:a = 6·270(3),b = 7·767(4),c = 12·141(7) Å, = 91·10(2), = 100·21(2), = 99·76(2) °;V _c = 572·64 ų,Z = 2,D _m = 1·520(9),D _c = 1·544 g cm^–3. The anion has an approximate 2-fold axis of symmetry to which bond lengths, angles and dihedral angles conform within experimental error. The cyclooctatetraene ring has a tub shape, similar to that found in other cyclooctatetraene structures, with its average bond lengths of 1·46 Å and 1·34 Å for single and double bonds respectively in good agreement with earlier values for similar molecules. The Ca²⁺ cation is coordinated by eight oxygen atoms (six carboxylate, two water) in a distorted tetragonal antiprism with distances ranging from 2·30 to 3·07 Å. All hydrogen atoms were located; the water hydrogens form a layer-like network of hydrogen bonds linking the water and carboxylate oxygens approximately perpendicular to the z axis. The distances range from 2·74 to 2·96 Å.     

Selinidin: Crystal structure generated by C–H···O, C–H···π and π-π interactions

The title compound, 9,10-dihydro-8,8-dimethyl-2-oxo-2H,8H-benzo[1,2-b:3,4-b']dipyran-9-yl-2-methyl-2-butenoate, C₁₉H₂₀O₅, was isolated from the roots of Selinum vaginatum. The compound crystallizes into monoclinic space group P2 ₁ with unit cell parameters: a = 12.830(2) Å, b = 9.041(1) Å, c = 14.983(1) Å, β = 95.09(1)°, Z = 4. The crystal structure has been determined using direct methods and refined by full-matrix least-squares to a final R value of 0.0529 for 3142 observed reflections. There are two independent molecules, A and B, per asymmetric unit. In both the molecules, the coumarin nucleus is planar. However pronounced differences are observed in the conformation of dihydropyran ring which has a half-chair conformation with an 8β-9α orientation in molecule A and is intermediate between half-chair and sofa in molecule B. Differences also occur in the conformation of the 2-methylbutenoyloxy side chain at C9 due to the different geometry of C–H···π interactions in molecules A and B. Molecules A and B are connected by π–π interactions between their coumarin fragments forming dimers. The dimers interact through C–H···O and C–H···πhydrogen bonds.     

Crystal structure of [Mn(II)(phen)(ClCH2COO)2]n (phen = 1,10−phenanthroline)

A new polymeric manganese(II) complex, [Mn(II)(phen)(ClCH₂COO)₂]_n, was obtained from the reaction of Mn(ClCH₂COO)₂ with phen and its structure was determined by x-ray crystallography. The complex crystallizes in the monoclinic system, space group C2/c with a = 19.706(4), b = 11.381(3), c = 7.482(3) Å, = 94.01(3)°, V = 1674.0(8) ų, and Z = 4. The structure consists of an infinite chain. The manganese atom is located on a twofold axis and presents a distorted octahedral coordination sphere, which consists of the two N atoms of a phen ligand (Mn—N = 2.304(2) Å) and four carboxylato ligands. The Mn···Mn distance within the chain is 4.53 Å, and the carboxylato bridges present a syn-anti conformation.     

Crystal and molecular structure of dithiobiuret

The crystal and molecular structure of dithiobiuret (S₂C₂N₃H₅) has been determined and refined from 1020 intensities measured by counter techniques at room temperature. The full-matrix refinement, including anisotropic temperature factors for the non-hydrogen atoms and isotropic temperature factors for the hydrogen atoms, converged to a finalR of 0·033. The structure consists of almost planar molecules in thetrans configuration with essentially only van der Waals interactions between molecules. The two independent C-S distances are 1·702(3) and 1·673(3) Å. The internal C-N distances are 1·386(4) and 1·367(4) Å, whereas the external C-N distances are 1·331(4) and 1·309(4) Å. The unit cell parameters area = 4·081(1),b = 17·684(5),c = 8·222(3) Å and = 100·56(2) °;Z = 4,D _m =D _c = 1·54 gcm^–3; the space group isP2₁/c.     

Intramolecular hydrogen bonding and tautomerism in N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine

N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine (C₁₆H₁₂N₂O) was studied by elemental analysis, IR, ¹H NMR, and UV–visible techniques and X-ray diffraction methods. The UV–visible spectrum of the compound was investigated in solutions effect polarity. The polarity of the some solvents was modifierly the additional (CF₃COOH) and [(C₂H₅)₃N]. The compound is in tautomeric equilibrium (phenol-imine O–H···N and keto-amine O···H–N forms) in polar and nonpolar solvents. The keto-amine form is observed in basic solutions of DMSO, ethanol, chloroform, benzene, cyclohexane, and in acidic solutions of chloroform and benzene, but not in acidic solutions of DMSO and ethanol. The compound crystallizes in the monoclinic, space group P2₁/a with a = 7.010(5) Å, b = 13.669(4) Å, c = 12.764(4) Å, = 101.23(4)°, V = 1199.6(10) ų, Z = 4, D _c = 1.375 g/cm³, (Mo K) = 0.088 mm^–1, R = 0.045 for 1658 reflections [I > 2(I)]. The title compound is not planar two Schiff base moieties A [C1–C11, O1] and B [N1, C12, C13, N2, C14, C15, C16] are inclined at an angle of 27.4(1)° reflecting mainly the twist about C12–N1 [C11–C12–N1–C13, 29.7(2)°]. There is a strong intramolecular hydrogen bond (O–H···N) of 2.529(2) Å.