Ultra sensitive trace gas detection for biomedical applications

We present an overview of our recent progress on spectroscopic trace gas detection for biomedical applications. The latest developments of cavity-enhanced spectroscopy as well as magnetic rotation spectroscopy lead to unprecedented sensitivity and specificity. The current detection limits of our laser spectroscopic approaches are in the picomolar to nanomolar range, depending on the molecular compound. The time resolution of the measurements is down to the sub-second range. This very high sensitivity and time resolution open up exciting perspectives for novel analytical tasks in biomedical research and clinical diagnosis.     

Microwave, high-resolution infrared, and quantum chemical investigations of CHBrF2: ground and v4 = 1 states

A combined microwave, infrared, and computational investigation of CHBrF(2) is reported. For the vibrational ground state, measurements in the millimeter- and sub-millimeter-wave regions for CH(79)BrF(2) and CH(81)BrF(2) provided rotational and centrifugal-distortion constants up to the sextic terms as well as the hyperfine parameters (quadrupole-coupling and spin-rotation interaction constants) of the bromine nucleus. The determination of the latter was made possible by recording of spectra at sub-Doppler resolution, achieved by means of the Lamb-dip technique, and supporting the spectra analysis by high-level quantum chemical calculations at the coupled-cluster level. In this context, the importance of relativistic effects, which are of the order of 6.5% and included in the present work using second-order direct perturbation theory, needs to be emphasized for accurate predictions of the bromine quadrupole-coupling constants. The infrared measurements focused on the ν(4) fundamental band of CH(79)BrF(2). Fourier transform investigations using a synchrotron radiation source provided the necessary resolution for the observation and analysis of the rotational structure. The spectroscopic parameters of the v(4) = 1 state were found to be close to those of the vibrational ground state, indicating that the ν(4) band is essentially unaffected by perturbations.     

Structure of a 129Xe-cryptophane biosensor complexed with human carbonic anhydrase II

Cryptophanes represent an exciting class of xenon-encapsulating molecules that can be exploited as probes for nuclear magnetic resonance imaging. The 1.70 A resolution crystal structure of a cryptophane-derivatized benezenesulfonamide complexed with human carbonic anhydrase II shows how an encapsulated xenon atom can be directed to a specific biological target. The crystal structure confirms binding measurements indicating that the cryptophane cage does not strongly interact with the surface of the protein, which may enhance the sensitivity of 129Xe NMR spectroscopic measurements in solution.     

Use of local rank‐based spatial information for resolution of spectroscopic images

Spectroscopic images are singular chemical measurements that enclose chemical and spatial information about samples. Resolution of spectroscopic images is focused on the recovery of the pure spectra and distribution maps of the image constituents from the sole raw spectroscopic measurement. In image resolution, constraints are generally limited to non‐negativity and the spatial information is generally not used. Local rank analysis methods have been adapted to describe the local spatial complexity of an image, providing specific pixel information. This local rank information combined with reference spectral information allows the identification of absent compounds in pixels with low compound overlap. The introduction of this information in the resolution process under the form of constraints helps to increase the performance of the resolution method and to decrease the ambiguity linked to the final solutions. Copyright © 2008 John Wiley & Sons, Ltd.     

The use of the CNDO method in spectroscopy: VII. Changes in dipole moment upon excitation

The results of the calculations of changes in dipole moment upon excitation of some organic molecules are discussed in connection with recent high resolution spectroscopic measurements of the same quantities. Calculations are reported for several substituted benzenes, several azines, and for formaldehyde, propynal, formyl fluoride, difluorodiazirine and azulene. The calculations were carried out within the CNDO/S parametrization scheme.     

Theoretical modeling of spectroscopic properties of molecules in solution: toward an effective dynamical discrete/continuum approach

In this work, we present an effective and flexible computational approach, which is the result of an on-going development conducted in our group, for simulating complex solute–solvent systems and computing relevant spectroscopic observables. Such an approach is based on QM/MM molecular dynamics techniques using non-periodic conductor boundary conditions and localized basis sets, combined with a posteriori high-level quantum mechanical methods for the calculation of spectroscopic parameters. As illustrative applications, we report structural and spectroscopic analyses of acetone, acrolein and glycine radical in aqueous solutions, where solvent effects on the NMR chemical shifts, UV absorption spectrum and EPR hyperfine coupling constants, respectively, are investigated and favorably compared to experimental measurements. In particular, it will be shown the importance of including dynamical effects in order to reproduce experimental data accurately. Moreover, we present an infrared analysis of formamide in both gas phase and acetonitrile from first-principle molecular dynamics simulations.     

Radiative Transitions of Singlet Oxygen: New Tools, New Techniques and New Interpretations

The near-IR phosphorescence of singlet delta oxygen, O₂(a¹Δg), has provided a wealth of information since it was first observed in solution-phase systems. The techniques employed and the quality of the data obtained have unproved significantly over the years that, in turn, presently makes it possible to address a wide variety of problems using both steady-state and time-resolved measurements. The development of spectroscopic methods to monitor other transitions in oxygen, specifically those that involve the singlet sigma state, O₂(b¹σ_g⁺), and the incorporation of high-level computational methods provides access to an even broader range of fundamental issues. The expertise presently available to monitor radiative transitions in oxygen, coupled with the current understanding of the effect of solvent on these transitions as achieved through state-of-the-art theoretical modeling makes it possible to consider the next step forward: the incorporation of spatial resolution and the construction of the singlet oxygen microscope.     

Study of the isomeric ratios in 107Ag(γ, n)106m,gAg reaction of natural silver induced by bremsstrahlungs with endpoint energies in the giant dipole resonance region

We measured for the first time the isomeric ratios in ¹⁰⁷Ag(γ, n)^106m,gAg reaction by using the activation method and γ-ray spectroscopic method for the whole giant dipole resonance region. The high-purity natural Ag foils in disc shape were irradiated with bremsstrahlungs generated from an electron accelerator Microtron. The induced gamma spectra in the irradiated foils were measured by the high resolution γ-ray spectroscopic system which consists of a high-purity germanium detector and a multichannel analyzer. In order to improve the accuracy of the experimental results, necessary corrections were made in the γ-ray activity measurements and data analysis. The results were analyzed, discussed and compared with those of other authors. For the above mentioned reaction, the isomeric ratios in the energy range from 14 to 24 MeV bremsstrahlungs in this work (except the values at 14, 18 and 20) are new measurements.     

Environmental Effects in Computational Spectroscopy: Accuracy and Interpretation

Spectroscopic techniques are valuable tools for understanding the structure and dynamics of complex systems, such as biomolecules or nanomaterials. Most of the current research is devoted to the development of new experimental techniques for improving the intrinsic resolution of different spectra. However, the subtle interplay of several different effects acting at different length and time scales still makes the interpretation and analysis of such spectra a very difficult task. In this respect, computational spectroscopy is becoming a needful and versatile tool for the assignment and interpretation of experimental spectra. It is in fact possible nowadays to model with relatively high accuracy the physical–chemical properties of complex molecules in different environments, and to link spectroscopic evidence directly to the structural and dynamical properties of optically or magnetically active solvated probes. In this Review, significant steps toward the simulation of entire spectra in condensed phases are presented together with some basic aspects of computational spectroscopy, which highlight how intramolecular and intermolecular degrees of freedom influence several spectroscopic parameters.     

Spectroscopic and Chemical Properties of Ionic Liquids: Computational Study

A brief account is given of highlights of our computational efforts – often in collaboration with experimental groups – to understand spectroscopic and chemical properties of ionic liquids (ILs). Molecular dynamics, including their inhomogeneous character, responsible for key spectral features observed in dielectric absorption, infra-red (IR) and fluorescence correlation spectroscopy (FCS) measurements are elucidated. Mechanisms of chemical processes involving imidazolium-based ILs are illustrated for CO₂ capture and related reactions, transesterification of cellulose, and Au nanocluster-catalyzed Suzuki cross-coupling reaction with attention paid to differing roles of IL ions. A comparison with experiments is also made.     

Spectroscopy among the stars

The space between the stars is not void, but filled with interstellar matter, mainly composed of dust and gas, which gather in large interstellar clouds. In our Galaxy these interstellar clouds are distributed along a thin, but extended layer which basically traces out the spiral distribution of matter: the stars, the gas, and the dust component. Up to the present time more than 100 different molecules have been identified in interstellar molecular clouds. The majority of the interstellar molecules constitute carbon containing organic substances. During the past years, overwhelming evidence has been gathered, mainly through spectroscopic observations, that interstellar molecular clouds provide the birthplaces for stars. In fact detailed high spectral and spatial resolution spectroscopic measurements reveal physical and chemical processes of the intricate star formation process.     

Spectroscopy among the stars

The space between the stars is not void, but filled with interstellar matter, mainly composed of dust and gas, which gather in large interstellar clouds. In our Galaxy these interstellar clouds are distributed along a thin, but extended layer which basically traces out the spiral distribution of matter: the stars, the gas, and the dust component. Up to the present time more than 100 different molecules have been identified in interstellar molecular clouds. The majority of the interstellar molecules constitute carbon containing organic substances. During the past years, overwhelming evidence has been gathered, mainly through spectroscopic observations, that interstellar molecular clouds provide the birthplaces for stars. In fact detailed high spectral and spatial resolution spectroscopic measurements reveal physical and chemical processes of the intricate star formation process.     

Picosecond time-resolved multiplex CARS spectroscopy using optical Kerr gating

We have developed a new spectroscopic system for picosecond time-resolved coherent anti-Stokes Raman scattering (CARS) measurements. Using the optical Kerr gating method in conjunction with a nanosecond laser-based CARS system, a time resolution of 1 ps has been achieved. All-trans retinal in 1-butanol has been measured. The observed time-resolved CARS spectra show changes in the 0–10 ps time range, which are ascribed to the photoisomerization dynamics of all-trans retinal in solution.     

The structure and spectra of organic peroxy radicals

Recent spectroscopic and computational work on organic peroxy radicals, RO(2), is reviewed and extended with an emphasis on radicals where R is an alkyl group. Detailed experimental spectral, structural relationships are developed and show the dependence of spectral properties on the number of carbon atoms in the radical, and its isomeric and conformeric structure. These empirical relationships are explored and rationalized with the help of a series of quantum chemistry calculations, which are in turn benchmarked by the experimental data. The application of the spectra as a diagnostic for sensitive and selective measurement of radical concentrations for different RO(2) species in an isomer- and conformer-specific manner is described. Future areas of research including investigation of additional peroxy species and high resolution spectra of cold radicals are discussed.     

Dual-etalon frequency-comb cavity ringdown spectrometer

We have demonstrated a spectroscopic technique for simultaneously obtaining broad spectral bandwidth and high frequency resolution absorption measurements, with 5 μs temporal resolution, continuously for tens of microseconds in an apparatus with no active stabilization. The technique utilizes two passive air-gap etalons to imprint two frequency comb patterns onto a single pulsed light source. The air-gap etalons also serve as cavity ringdown cells increasing the sensitivity of the absorption spectroscopy by increasing the interrogation path length. Here, we demonstrate the operation of the spectrometer utilizing a ~0.15 cm(-1) bandwidth pulsed dye laser and two nearly identical 300 MHz free-spectral range confocal air-gap etalons each with a finesse of ~1 × 10(5), to investigate the (1,1,3) overtone of water and the R(7) transition of the O(2) b(1)Σ(g)(+)←X(3)Σ(g)(-) (2,0) band with high spectral resolution.     

Femtosecond Time-Resolved Spectroscopic Photoemission Electron Microscopy for Probing Ultrafast Carrier Dynamics in Heterojunctions

The fast developing semiconductor industry is pushing to shrink and speed up transistors. This trend requires us to understand carrier dynamics in semiconductor heterojunctions with both high spatial and temporal resolutions. Recently, we have successfully set up a timeresolved photoemission electron microscopy (TR-PEEM), which integrates the spectroscopic technique to measure electron densities at specific energy levels in space. This instrument provides us an unprecedented access to the evolution of electrons in terms of spatial location, time resolution, and energy, representing a new type of 4D spectro-microscopy. Here in this work, we present measurements of semiconductor performance with a time resolution of 184 fs, electron kinetic energy resolution of 150 meV, and spatial resolution of about 150 nm or better. We obtained time-resolved micro-area photoelectron spectra and energy-resolved TR-PEEM images on the Pb island on Si(111). These experimental results suggest that this instrument has the potential to be a powerful tool for investigating the carrier dynamics in various heterojunctions, which will deepen our understanding of semiconductor properties in the submicron/nanometer spatial scales and ultrafast time scales.     

Hydronium and hydroxide at the interface between water and hydrophobic media

The behavior of hydronium and hydroxide ions at the water/alkane, water/vapor, and water/rigid wall interfaces was investigated by means of molecular dynamics simulations. All these interfaces exhibit a strong affinity for hydronium, which is in agreement with spectroscopic and low pH zeta-potential measurements. Except for the water/rigid wall interface, which strongly structures water and weakly attracts OH(-), none of the other investigated interfaces shows an appreciable accumulation of hydroxide. This computational result is at odds with the interpretation of higher pH zeta-potential and titration experiments, however, it is supported by surface selective spectroscopies of the surface of water and hydroxide solutions.