Evolution of the structure of amorphous ice: from low-density amorphous through high-density amorphous to very high-density amorphous ice

We report results of molecular dynamics simulations of amorphous ice for pressures up to 22.5 kbar. The high-density amorphous ice (HDA) as prepared by pressure-induced amorphization of I(h) ice at T=80 K is annealed to T=170 K at various pressures to allow for relaxation. Upon increase of pressure, relaxed amorphous ice undergoes a pronounced change of structure, ranging from the low-density amorphous ice at p=0, through a continuum of HDA states to the limiting very high-density amorphous ice (VHDA) regime above 10 kbar. The main part of the overall structural change takes place within the HDA megabasin, which includes a variety of structures with quite different local and medium-range order as well as network topology and spans a broad range of densities. The VHDA represents the limit to densification by adapting the hydrogen-bonded network topology, without creating interpenetrating networks. The connection between structure and metastability of various forms upon decompression and heating is studied and discussed. We also discuss the analogy with amorphous and crystalline silica. Finally, some conclusions concerning the relation between amorphous ice and supercooled water are drawn.     

The glass transition behaviors of low-density amorphous ice films with different thicknesses

The glass transition behaviors of amorphous ice with different thicknesses are studied by determining the heat capacity of low-density amorphous ice without crystallization using first principle molecular dynamics (FP-MD) and classical MD methods. The behaviors are also studied by analyzing hydrogen-bond network, the radial distribution functions, and relationship between hydrogen bond and electronic structures. It is found that the glass transition temperature (T(g)) in the range of 90 K < T < 100 K for 4 nm amorphous ice film by FP-MD method, and 120 K < T(g) < 130 K for 8 nm amorphous ice film by MD method. Meanwhile, T(g) decreases with the decreasing thickness of amorphous ice film, which is also validated by the theoretical model.     

Unusual Gruneisen and Bridgman parameters of low-density amorphous ice and their implications on pressure induced amorphization

The low-temperature limiting value of the Grüneisen parameter for low-frequency phonons and the density dependence of the thermal conductivity (Bridgman parameter) of low-density amorphous (LDA) ice, high-density amorphous (HDA) ice, hexagonal ice Ih, and cubic ice Ic were calculated from high-pressure sound velocity and thermal conductivity measurements, yielding negative values for all states except HDA ice. LDA ice is the first amorphous state to exhibit a negative Bridgman parameter, and negative Grüneisen parameters are relatively unusual. Since Ih, Ic, and LDA ice all transform to HDA upon pressurization at low temperatures and share the unusual feature of negative Grüneisen parameters, this seems to be a prerequisite for pressure induced amorphization. We estimate that the Grüneisen parameter increases at the ice Ih to XI transition, and may become positive in ice XI, which indicates that proton-ordered ice XI does not amorphize like ice Ih on pressurization.     

Sticking of CO to crystalline and amorphous ice surfaces

We present results of classical trajectory calculations on the sticking of hyperthermal CO to the basal plane (0001) face of crystalline ice Ih and to the surface of amorphous ice Ia. The calculations were performed for normal incidence at a surface temperature Ts = 90 K for ice Ia, and at Ts = 90 and 150 K for ice Ih. For both surfaces, the sticking probability can be fitted to a simple exponentially decaying function of the incidence energy, Ei: Ps = 1.0e(-Ei(kJ/mol)/90(kJ/mol)) at Ts = 90 K. The energy transfer from the impinging molecule to the crystalline and the amorphous surface is found to be quite efficient, in agreement with the results of molecular beam experiments on the scattering of the similar molecule, N2, from crystalline and amorphous ice. However, the energy transfer is less efficient for amorphous than for crystalline ice. Our calculations predict that the sticking probability decreases with Ts for CO scattering from crystalline ice, as the energy transfer from the impinging molecule to the warmer surfaces becomes less efficient. At high Ei (up to 193 kJ/mol), no surface penetration occurs in the case of crystalline ice. However, for CO colliding with the amorphous surface, a penetrating trajectory was observed to occur into a large water pore. The molecular dynamics calculations predict that the average potential energy of CO adsorbed to ice Ih is -10.1 +/- 0.2 and -8.4 +/- 0.2 kJ/mol for CO adsorbed to ice Ia. These values are in agreement with previous experimental and theoretical data. The distribution of the potential energy of CO adsorbed to ice Ia was found to be wider (with a standard deviation sigma of 2.4 kJ/mol) than that of CO interacting with ice Ih (sigma = 2.0 kJ/mol). In collisions with ice Ia, the CO molecules scatter at larger angles and over a wider distribution of angles than in collisions with ice Ih.     

The photodissociative ionization of amorphous ice

Within the energy range 17 hv < 35 eV, the ionic species desorbed and their excitation spectra are reported. The only positive ion desorbed is H⁺. A model for the surface is suggested which explains the absence of OH⁺ desorption. The desorption mechanisms are discussed in terms of an energy analysis.     

Investigation of vapor-deposited amorphous ice and irradiated ice by molecular dynamics simulation

With the purpose of clarifying a number of points raised in the experimental literature, we investigate by molecular dynamics simulation the thermodynamics, the structure and the vibrational properties of vapor-deposited amorphous ice (ASW) as well as the phase transformations experienced by crystalline and vitreous ice under ion bombardment. Concerning ASW, we have shown that by changing the conditions of the deposition process, it is possible to form either a nonmicroporous amorphous deposit whose density (approximately 1.0 g/cm3) is essentially invariant with the temperature of deposition, or a microporous sample whose density varies drastically upon temperature annealing. We find that ASW is energetically different from glassy water except at the glass transition temperature and above. Moreover, the molecular dynamics simulation shows no evidence for the formation of a high-density phase when depositing water molecules at very low temperature. In order to model the processing of interstellar ices by cosmic ray protons and heavy ions coming from the magnetospheric radiation environment around the giant planets, we bombarded samples of vitreous ice and cubic ice with 35 eV water molecules. After irradiation the recovered samples were found to be densified, the lower the temperature, the higher the density of the recovered sample. The analysis of the structure and vibrational properties of this new high-density phase of amorphous ice shows a close relationship with those of high-density amorphous ice obtained by pressure-induced amorphization.     

Glass transition of low-density amorphous water and related structures

In this work, the glass transition of water was studied with density functional theory. The transition temperature was determined by measuring the heat capacity Cp of low-density amorphous water during rapid heating. This technique ensures that all measurements were implemented without crystallization occurring, which is difficult to be achieved experimentally. The results showed that the glass transition occurs at 171 K, which is much higher than the reported value of 136 K. In addition, the triply hydrogen-bonded water molecules were found when T > 180 K, demonstrating the existence of the liquid structure at the higher temperature range.     

Crystal‐to‐crystal transformation upon dehydration of a copper(II) 2,2′:6′,2′′‐terpyridine complex

The reaction of 2,2′:6′,2′′‐terpyridine (terpy) with CuCl₂ in the presence of sodium sulfite led to the synthesis of the ionic complex aquachlorido(2,2′:6′,2′′‐terpyridyl‐κ³N,N′,N′′)copper(II) chlorido(dithionato‐κO)(2,2′:6′,2′′‐terpyridyl‐κ³N,N′,N′′)cuprate(II) dihydrate, [CuCl(C₁₅H₁₁N₃)(H₂O)][CuCl(S₂O₆)(C₁₅H₁₁N₃)]·2H₂O, (I), and the in situ synthesis of the S₂O₆²⁻ dianion. Compound (I) is composed of a [CuCl(terpy)(H₂O)]⁺ cation, a [Cu(S₂O₆)(terpy)]⁻ anion and two solvent water molecules. Thermogravimetric analysis indicated the loss of two water molecules at ca 363 K, and at 433 K the weight loss indicated a total loss of 2.5 water molecules. The crystal structure analysis of the resulting pale‐green dried crystals, μ‐dithionato‐κ²O:O′‐bis[chlorido(2,2′:6′,2′′‐terpyridyl‐κ³N,N′,N′′)copper(II)] monohydrate, [Cu₂Cl₂(S₂O₆)(C₁₅H₁₁N₃)₂]·H₂O, (II), revealed a net loss of 1.5 water molecules and the formation of a binuclear complex with two [CuCl(terpy)]⁺ cations bridged by a dithionate dianion. The crystal‐to‐crystal transformation involved an effective reduction in the unit‐cell volume of ca 7.6%. In (I), the ions are linked by O—H...O hydrogen bonds involving the coordinated and solvent water molecules and O atoms of the dithionate unit, to form ribbon‐like polymer chains propagating in [100]. These chains are linked by Cu...Cl interactions [3.2626 (7) Å in the cation and 3.3492 (7) Å in the anion] centred about inversion centres, to form two‐dimensional networks lying in and parallel to (01). In (II), symmetry‐related molecules are linked by O—H...O hydrogen bonds involving the partially occupied disordered water molecule and an O atom of the bridging thiosulfite anion, to form ribbon‐like polymer chains propagating in [100]. These chains are also linked by Cu...Cl interactions [3.3765 (12) Å] centred about inversion centres to form similar two‐dimensional networks to (I) lying in and parallel to (02), crosslinked into three dimensions by C—H...O=S and C—H...O(water) interactions.     

Formation of high density amorphous ice by decompression of ice VII and ice VIII at 135 K

Monte Carlo computer simulations of ice VII and ice VIII phases have been undertaken using the four-point transferable intermolecular potential model of water. By following thermodynamic paths similar to those used experimentally, ice is decompressed resulting in an amorphous phase. These phases are compared to the high density amorphous phase formed upon compression of ice Ih and are found to have very similar structures. By cooling liquid water along the water/Ih melting line a high density amorphous phase was also generated.     

A Direct Synthesis of Nucleoside Analogs Homologated at the 3′‐ and 5′‐Positions

A new route is presented to prepare analogs of nucleosides homologated at the 3′‐ and 5′‐positions. This route, applicable to both the D ‐ and L ‐enantiomeric forms, is suitable for the preparation of monomeric bis‐homonucleosides needed for the synthesis of oligonucleotide analogs. It begins with the known monobenzyl ether 3 of pent‐2‐yne‐1,5‐diol, which is reduced to alkenol 4 . Sharpless asymmetric epoxidation of 4 , followed by opening of the epoxide 5 with allylmagnesium bromide, gives a mixture of diols 6 and 7 . Protection of the primary alcohol as a silyl ether followed by treatment with OsO₄, NaIO₄, and mild acid in MeOH, followed by reduction, yields (2R,3R) {{[(tert‐butyl)diphenylsilyl]oxy}methyl}tetrahydro‐2‐(2‐hydroxyethyl)‐5‐methoxyfuran (=methyl 3‐{{[(tert‐butyl)diphenylsilyl]oxy}methyl}‐2,3,5‐trideoxy‐α/β‐D ‐erythro‐hexafuranoside; 10 ) (Scheme 1). Protected nucleobases are added to this skeleton with the aid of trimethylsilyl triflate (Scheme 2). The o‐toluoyl (2‐MeC₆H₄CO) and p‐anisoyl (4‐MeOC₆H₄CO) groups were used to protect the exocyclic amino group of cytosine. The bis‐homonucleoside analogs 11 and 14a are then converted to monothiol derivatives suitable for coupling (Schemes 3 and 4) to oligonucleotide analogs with bridging S‐atoms. This synthesis replaces a much longer synthesis for analogous nucleoside analogs that begins with diacetoneglucose (=1,2 : 5,6‐di‐O‐isopropylideneglucose), with the stereogenic centers in the final products derived from the Sharpless asymmetric epoxidation. The new route is useful for large‐scale synthesis of these building blocks for the synthesis of oligonucleotide analogs.     

Direct observation of the transformation of ludwigite to orthopinakiolite

Crystals with the composition Mg_1.5Mn_1.5BO₅ prepared at 1300°C in sealed platinum tubes were studied by high-resolution electron microscopy. The crystals were found to possess the ludwigite structure with very few inherent planar defects. After heating in the electron beam the electron diffraction patterns and electron micrographs showed that the ludwigite structure had rearranged to the orthopinakiolite structure. Two possible mechanisms for such a transformation have been described.     

Structural and dynamic features of water and amorphous ice

Structural properties and microscopic dynamics of water and amorphous ice have been studied by the molecular dynamics method. It has been found that the distribution function of the tetrahedricity parameter exhibits two ranges, which correspond to local molecular formations with low and high degrees of tetrahedricity. The number of molecular clusters with a high degree of tetrahedricity grows as temperature decreases. It has been shown that the vibrational density of states comprises two vibrational modes. A low-frequency vibrational mode strongly depends on pressure and is almost independent of temperature, while a high-frequency mode is relevant to the pressure-independent heat motion of molecules. The geometric criterion of hydrogen bonds has been used to evaluate their continuous lifetime as depending on temperature for molecules with different coordination values. The average lifetime of a hydrogen bond substantially depends on the coordination of molecules, with the temperature dependence of the coordination obeying the activation dynamics.     

Photo ejection of water molecules from amorphous ice films

Water molecules are photo-ejected upon laser irradiation from the surface of ice films grown on graphite (0001) and Pt(111). The films are deposited at temperatures between 40 and 140 K and irradiated with nanosecond laser pulses. The process is investigated in the wavelength range between 275 and 670 nm. The wavelength and photon flux dependence suggest a multi-photon process with energy threshold of around 9 eV. The photo-detachment is less effective or negligible from films annealed at temperatures above the amorphous-crystalline transition temperature of ice films. Coverage dependence of the phenomena relates the photo yield to surface roughness. Electronic excitation mechanism related to the defects in ice is proposed to explain the observations.     

Formation of gas hydrate during crystallization of ethane-saturated amorphous ice

Layers of ethane-saturated amorphous ice were prepared by depositing molecular beams of water and gas on a substrate cooled with liquid nitrogen. The heating of the layers was accompanied by vitrification (softening) followed by spontaneous crystallization. Crystallization of condensates under the conditions of deep metastability proceeded with gas hydrate formation. The vitrification and crystallization temperatures of the condensates were determined from the changes in their dielectric properties on heating. The thermal effects of transformations were recorded by differential thermal analysis. The crystallization of the amorphous water layers was studied by electron diffraction. Formation of a metastable packing with elements of a cubic diamond-like structure was noted.     

A systematic approach to the AA′BB′, AA′BB′MX and derived systems in nuclear magnetic resonance

The AA′BB′ and AA′BB′MX nuclear magnetic resonance spin systems for I = ½ nuclei have been analysed. Expressions for the transition frequencies and intensities have been obtained which have the maximum accuracy consistent with practicable use. The analyses have been applied respectively to a hypothetical AA′BB′ nuclear spin system and to the two molecules para- fluoro-phenyldichlorophosphine and tris-para-fluorophenylphosphine. Inconsistencies in earlier treatments of the AA′BB′ system have been clarified.     

The nucleation rate of crystalline ice in amorphous solid water

The kinetics of crystalline ice nucleation and growth in nonporous, molecular beam deposited amorphous solid water (ASW) films are investigated at temperatures near 140 K. We implement an experimental methodology and corresponding model of crystallization kinetics to decouple growth from nucleation and quantify the temperature dependence and absolute rates of both processes. Nucleation rates are found to increase from approximately 3x10(13) m(-3) s(-1) at 134 K to approximately 2x10(17) m(-3) s(-1) at 142 K, corresponding to an Arrhenius activation energy of 168 kJ/mol. Over the same temperature range, the growth velocity increases from approximately 0.4 to approximately 4 A s(-1), also exhibiting Arrhenius behavior with an activation energy of 47 kJ/mol. These nucleation rates are up to ten orders of magnitude larger than in liquid water near 235 K, while growth velocities are approximately 10(9) times smaller. Crystalline ice nucleation kinetics determined in this study differ significantly from those reported previously for porous, background vapor deposited ASW, suggesting the nucleation mechanism is dependent upon film morphology.     

Heat of transformation of chains in amorphous sulphur

The heatQ of transformation of the chains in amorphous sulphur was measured calorimetrically. The mean value ¯Q for samples remelted atT _f=443 K increases from 31.5 to 45.9 J g^–1 in the measurement temperature range from 288 to 303 K.For samples remelted in theT _f range from 443 to 573 K, the ¯Q values are from 30.6 to 24.0 J g^–1.The results are discussed on the basis of the theory of nucleation and growth of nuclei.     

Facile N‐Alkylation/N′‐Arylation Process: A Direct Approach to Aromatic Aminoalkyl Amines

An intriguing C?N transformation involving a catalyst‐free N‐alkylation/N′‐arylation process in a multicomponent reaction with secondary amines, cyclic tertiary amines and electron‐deficient aryl halides has been described. In this case, the N‐alkylation of secondary amines, utilizing cyclic tertiary amines as alkyl group sources, is enabled by a facile C?N cleavage. Such an operationally simple method could facilitate access to aromatic aminoalkyl amines, nitrogen‐containing bioactive molecules, in good to excellent yields.