Structures and vibrational frequencies of 2-hydroxy-3-methoxy-5-nitrobenzaldehyde and 2-methoxy-1-naphthaldehyde based on density functional theory calculations

FT-IR and FT-Raman spectra of 2-hydroxy-3-methoxy-5-nitrobenzaldehyde (HMN) and 2-methoxy-1-naphthaldehyde (MN) have been recorded in the regions 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The molecular structure, conformational stability, geometry optimization, vibrational frequencies have been investigated. The total energy calculations of HMN and MN were tried for various possible conformers. The spectra were interpreted with the aid of normal coordinate analysis based on density functional theory (DFT) using B3LYP/6-31G* and B3LYP/6-311+G** level and basis set combinations and was scaled using various scale factors yielding good agreement between observed and calculated frequencies. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of the simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.     

Absolute configurations, predominant conformations, and tautomeric structures of enantiomeric tert-butylphenylphosphinothioic acid.

Vibrational absorption and circular dichroism spectra of dextrorotatory, levorotatory, and racemic mixture of tert-butylphenylphosphinothioic acid have been measured in CCl(4) solutions in the 2000-900 cm(-1) region. The conformations for both tautomeric structures of (S)-tert-butylphenylphosphinothioic acid are investigated using the B3LYP functional with the 6-31G* basis set. For the most stable conformation, the absorption and VCD spectra are predicted ab initio using the B3LYP functional with 6-31G*, 6-311G(2d, 2p), 6-31+G, and 6-311G(3df, 3pd) basis sets. A different functional, B3PW91, was also used with the 6-31G* basis set. The predicted spectra are compared to the experimental spectra. The comparison indicates that (-)-tert-butylphenylphosphinothioic acid is of the (S)-configuration and exists in only one tautomeric structure and one conformation in CCl(4) solution.     

Vibrational spectra and potential energy distributions for 4,5-dichloro-3-hydroxypyridazine by density functional theory and normal coordinate calculations

The solid phase FT-IR and FT-Raman spectra of 4,5-dichloro-3-hydroxypyridazine have been recorded in the regions 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The spectra were interpreted with the aid of normal coordinate analysis following a full structure optimization and force field calculations based on the density functional theory (DFT) using the standard B3LYP/6-31G* and B3LYP/6-311+G** method and basis set combinations. The DFT force field transformed to natural internal coordinates was corrected by a well-established set of scale factors that were found to be transferable to the title compound. The IR and Raman spectra were predicted theoretically and compared with the experimental spectra.     

Molecular structure and vibrational spectra of 3-chloro-4-fluoro benzonitrile by ab initio HF and density functional method

In this work, the experimental and theoretical spectra of 3-chloro-4-fluoro benzonitrile (3C4FBN) were studied. The Fourier transform infrared and Fourier transform Raman spectra of 3C4FBN were recorded in the solid phase. The optimized geometry was calculated by HF and B3LYP methods with 6-311++G(d,p) basis set. The harmonic-vibrational frequencies, infrared intensities and Raman scattering activities of the title compound were performed at and HF/B3LYP/6-311++G(d,p) level of theories. The scaled theoretical wave number showed very good agreement with the experimental values. The thermodynamic functions of the title compound was also performed at HF/6-31G(d,p) and B3LYP/6-311++G(d,p) level of theories. A detailed interpretation of the infrared and Raman spectra of 3C4FBN was reported. The theoretical spectrograms for FT-IR and FT-Raman spectra of the title molecule have been constructed.     

Absorption, Circular Dichroism, and Luminescence Spectroscopy of Electrogenerated Delta-[Ru(bipy)(3)](+/0/)(-) and Delta-[Os(bipy)(3)](+/0/)(-) (bipy = 2,2'-Bipyridine)

The electronic absorption and circular dichroism (CD) spectra of the complexes produced by the one, two, and three electron reduction of Delta-[Ru(bipy)(3)](2+) and Delta-[Os(bipy)(3)](2+) are reported. The CD spectra give unequivocal proof that the added electrons are localized on individual bipiridine ligands and thus that the complexes are correctly formulated [M(bipy)(2)(bipy(-))](+), [M(bipy)(bipy(-))(2)](0), and [M(bipy(-))(3)](-). The absorption spectra of the triply reduced species [M(bipy(-))(3)](-) (M = Ru, Os) are compared to those of the Fe(II) and Ir(III) analogs. The luminescence spectra of the two triply reduced complexes [Ru(bipy(-))(3)](-) and [Os(bipy(-))(3)](-). are also presented. The MLCT luminescence found in the parent complexes is completely quenched and is replaced by a weak luminescence attributed to the pi(10) --> pi(7) transition of the (coordinated) [bipy](-) ion.     

Density functional theory calculations and vibrational spectra of 3,5-dibromopyridine and 3,5-dichloro-2,4,6-trifluoropyridine

The solid phase mid FTIR and FT-Raman spectra of 3,5-dibromopyridine (3,5-DBP) and 3,5-dichloro-2,4,6-trifluoropyridine (3,5-DCTFP) have been recorded in the regions 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The spectra were interpreted with the help of normal coordinate analysis (NCA) following full structure optimisation and force field calculations based on the density functional theory (DFT) using the standard B3LYP/6-31G( *) method and basis set combination. The results of the calculations are applied to stimulate infrared and Raman spectra of the title compounds which showed excellent agreement with the observed spectra.     

Emission spectra and electronic energy levels of the rotational isomers of pyridinecarboxaldehyde vapors

Emission and excitation spectra of 2-, 3- and 4-pyridinecarboxaldehyde (2-, 3- and 4-PCA, respectively) vapors have been measured at different temperatures and compared to one another. The emission spectra of these vapors are shown to consist of the T(1)(n, pi) --> S(0) phosphorescence accompanied by the weak thermally activated S(1)(n, pi) --> S(0) delayed fluorescence. Two peaks originating from the two rotamers (syn and anti) have been identified in the fluorescence, phosphorescence and excitation spectra of 3-PCA vapor. Analyses of the temperature dependence and vibrational structure of the spectra of 3-PCA vapor provide the syn-anti energy difference of 190 +/- 30 cm(-1) in the T(1) (n, pi) state, 200 +/- 30 cm(-1) in the S(1)(n, pi) state, and 290 +/- 35 cm(-1) in the ground state. The ground-state energy difference is in agreement with the result of density functional theory (DFT) calculation for 3-PCA vapor. DFT calculation demonstrated also that the syn rotamer exists as a less stable isomer in the ground state for 2- and 3-PCA vapors.     

Vibrational absorption and circular dichroism studies of (-)-camphanic acid

Vibrational absorption and circular dichroism (VCD) spectra of (-)-(1S,3R)-camphanic acid have been measured in deuterated chloroform solutions at different concentrations (0.005, 0.045, and 0.200 M) in the mid-infrared spectral range. Experimental spectra have been compared with the density functional theory (DFT) absorption and VCD spectra, calculated using the B3PW91 functional and cc-pVTZ basis set for three conformers of both the monomer and the dimer forms of (-)-(1S,3R)-camphanic acid. These calculations indicate that, in the dilute solution, the conformer with intramolecular hydrogen-bonding between the hydroxyl and lactone groups is of lowest energy and represents 70% of the different monomer conformers at room temperature, whereas, in concentrated solution, the dimer formed by intermolecular hydrogen-bonding of carboxyl groups of the two distinct monomer conformations is stabilized. The vibrational absorption and circular dichroism spectra calculated from the Boltzmann population of the individual monomer and dimer conformers are in very good overall agreement with the corresponding experimental spectra, allowing the absolute conformation and configuration of (-)-(1S,3R)-camphanic acid in dilute and concentrated solution, respectively. Experiments were also performed on (-)-(1S,3R)-camphanic chloride for which the populations predicted by DFT calculations are found to be in disagreement with those deduced from experimental spectra.     

Circular dichroism spectra and absolute configuration of some aryl methyl sulfoxides

The absorption and circular dichroism (CD) spectra of three aryl sulfoxides, i.e. (-)-(S)-1-naphthyl methyl sulfoxide, (S)-1, (-)-(S)-1-(2-methyl)naphthyl methyl sulfoxide, (S)-2 and (-)-(S)-9-phenanthryl methyl sulfoxide, (S)-3, have been interpreted by means of the coupled oscillator model formulated by DeVoe. Theoretical spectra have been calculated starting from input geometries provided by molecular mechanics (MMX) calculations and by employing standard spectroscopic parameters to describe the allowed transitions of the aromatic and the sulfoxide chromophores. The satisfactory agreement between the predicted and experimental spectra allows us to confirm the configurational assignment of these compounds as (-)/(S). The analysis of CD spectra, affording the right assignment of the absolute configuration (AC) of the alkyl aryl sulfoxides, then offers a practical alternative to the more complex vibrational circular dichroism spectroscopy and ab initio optical rotation calculation techniques that have been used very recently to assign the AC of (-)-2 and (-)-3.     

两种氧氮杂环戊二烯类化合物的紫外和荧光光谱的溶剂效应

前文报道了1,4-二(5-苯基-1,3,4-嚼二唑基-2)苯(PDPDP)紫外、荧光光谱的溶剂效应.为了与PDPDP比较,又合成了1-(5-苯基-1,3,4-噁二唑基-2)-4-(5′-苯基-1′,3′-噁唑基-2′)苯(PDPOP)和1-(5-苯基-1,3,4-噁二唑基-2)-4-(2′-苯基-1′,3′噁唑基-5′)苯(PDPO′P).     

Structures and vibrational frequencies of 2-naphthoic acid and 6-bromo-2-naphthoic acid based on density functional theory calculations

The solid phase mid FTIR and FT Raman spectra of 2-naphthoic acid (NA) and 6-bromo-2-naphthoic acid (BNA) have been recorded in the regions 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The fundamental vibrational frequencies and intensities of the vibrational bands were evaluated using density functional theory (DFT) using standard B3LYP method and 6-311+G** basis set combinations. The vibrational spectra were interpreted, with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.     

Theoretical study on the geometry and vibration of 1-[6-(4-Chlorophenyl)-1-[(6-chloropyridin-3-yl)methyl]-2-[(6-chloropyridin-3-yl)methylsulfanyl]-4-methyl-1,6-dihydropyrimidin-5-yl]ethanone

The solid phase FT-IR and FT-Raman spectra of 1-[6-(4-chlorophenyl)-1-[(6-chloropyridin-3-yl)methyl]-2-[(6-chloropyridin-3-yl)methylsulfanyl]-4-methyl-1,6-dihydropyrimidin-5-yl]ethanone (C25H21Cl3N4OS) were recorded in the region 4000-400 and 3500-100cm(-1), respectively. The vibrational spectra have been computed using density functional theory (B3LYP) and ab initio molecular orbital calculation (HF) with 6-31G(d, p) basis sets. A close agreement was achieved between the observed and calculated frequency by employing normal coordinate calculations. The observed and simulated spectra were found to be well comparable.     

FT-IR and FT-Raman spectroscopic investigation, computed vibrational frequency analysis and IR intensity and Raman activity peak resemblance analysis on 2-nitroanisole using HF and DFT (B3LYP and B3PW91) calculations

Fourier-transform Raman and infrared spectra of 2-nitroanisole are recorded (4000-100 cm(-1)) and interpreted by comparison with respective theoretical spectra calculated using HF and DFT method. The geometrical parameters with C(S) symmetry, harmonic vibrational frequencies, infrared and Raman scattering intensities are determined using HF/6-311++G (d, p), B3LYP/6-311+G (d, p), B3LYP/6-311++G (d, p) and B3PW91/6-311++G (d, p) level of theories. A detailed vibrational spectral analysis has been carried out and assignments of the observed fundamental bands have been proposed on the basis of peak positions and relative intensities. The results of the calculations have been used to simulate IR and Raman spectra for the molecule that showed good agreement with the observed spectra. The SQM method, which implies multiple scaling of the DFT force fields has been shown superior to the uniform scaling approach. The vibrational frequencies and the infrared intensities of the C-H modes involved in back-donation and conjugation are also investigated.     

Sulfur X-ray absorption and vibrational spectroscopic study of sulfur dioxide, sulfite, and sulfonate solutions and of the substituted sulfonate ions X3CSO3- (X = H, Cl, F)

Sulfur K-edge X-ray absorption near-edge structure (XANES) spectra have been recorded and the S(1s) electron excitations evaluated by means of density functional theory-transition potential (DFT-TP) calculations to provide insight into the coordination, bonding, and electronic structure. The XANES spectra for the various species in sulfur dioxide and aqueous sodium sulfite solutions show considerable differences at different pH values in the environmentally important sulfite(IV) system. In strongly acidic (pH < approximately 1) aqueous sulfite solution the XANES spectra confirm that the hydrated sulfur dioxide molecule, SO2(aq), dominates. The theoretical spectra are consistent with an OSO angle of approximately 119 degrees in gas phase and acetonitrile solution, while in aqueous solution hydrogen bonding reduces the angle to approximately 116 degrees . The hydration affects the XANES spectra also for the sulfite ion, SO32-. At intermediate pH ( approximately 4) the two coordination isomers, the sulfonate (HSO3-) and hydrogen sulfite (SO3H-) ions with the hydrogen atom coordinated to sulfur and oxygen, respectively, could be distinguished with the ratio HSO3-:SO3H- about 0.28:0.72 at 298 K. The relative amount of HSO3- increased with increasing temperature in the investigated range from 275 to 343 K. XANES spectra of sulfonate, methanesulfonate, trichloromethanesulfonate, and trifluoromethanesulfonate compounds, all with closely similar S-O bond distances in tetrahedral configuration around the sulfur atom, were interpreted by DFT-TP computations. The energy of their main electronic transition from the sulfur K-shell is about 2478 eV. The additional absorption features are similar when a hydrogen atom or an electron-donating methyl group is bonded to the -SO3 group. Significant changes occur for the electronegative trichloromethyl (Cl3C-) and trifluoromethyl (F3C-) groups, which strongly affect the distribution especially of the pi electrons around the sulfur atom. The S-D bond distance 1.38(2) A was obtained for the deuterated sulfonate (DSO3-) ion by Rietveld analysis of neutron powder diffraction data of CsDSO3. Raman and infrared absorption spectra of the CsHSO3, CsDSO3, H3CSO3Na, and Cl3CSO3Na.H2O compounds and Raman spectra of the sulfite solutions have been interpreted by normal coordinate calculations. The C-S stretching force constant for the trichloromethanesulfonate ion obtains an anomalously low value due to steric repulsion between the Cl3C- and -SO3 groups. The S-O stretching force constants were correlated with corresponding S-O bond distances for several oxosulfur species.     

新型离子型尾式乙基咪唑基卟啉化合物的合成与表征

通过不对称的单羟基卟啉化合物、二溴烷烃、咪唑和溴乙烷反应,合成了一种新型的离子型尾式卟啉化合物——溴化5-对{4-[1-(3-乙基)-咪唑基]丁氧基}苯基-10,15,20-三苯基卟啉(Et-ImBPTPP)Br,并采用质谱、紫外光谱、红外光谱、热重分析、元素分析、能谱和核磁共振氢谱对该化合物进行了结构表征。     

Density functional theory calculation and vibrational spectroscopy study of 2-amino-4,6-dimethyl pyrimidine (ADMP)

The solid phase FTIR and FT-Raman spectra of 2-amino-4,6-dimethyl pyrimidine (ADMP) have been recorded in the regions 4000-400 cm(-1) and 3500-50 cm(-1) respectively. The structure was investigated by utilizing density functional theory (DFT) calculations with the Becke 3-Lee-Yang-Parr (B3LYP) method employing the 6-31+G and 6-311++G basis sets. The optimized geometrical parameters obtained by B3LYP method show good agreement with experimental data. Complete vibrational assignments were made on the basis of normal coordinate analysis (NCA) for the molecule. The infrared and Raman spectra were also predicted from the calculated intensities. The observed and the calculated spectra were found to be in good agreement. The thermodynamic properties like entropies and their correlations with temperatures were also obtained from the harmonic frequencies of the optimized structures.     

Determination of the absolute configuration of chiral alpha-aryloxypropanoic acids using vibrational circular dichroism studies: 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid

The enantiomers of 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid were resolved on a chiral HPLC column and investigated using mid-infrared vibrational circular dichroism (VCD). Experimental infrared vibrational absorption and VCD spectra were measured in CDCl3 solution in the 2000-900 cm-1 region and compared with the ab initio predictions of absorption and VCD spectra. The predicted spectra were obtained with density functional theory using B3LYP/6-31G* basis set for the stable and dominant conformers. But the predicted spectra did not provide unambiguous structural information due to intermolecular hydrogen bonding in solution. To eliminate the hydrogen bonding effects, the acids were converted to the corresponding methyl esters and the experimental absorbance and VCD spectra of methyl esters were measured. B3LYP predicted spectra were also obtained for the stable and dominant conformers of the esters. From a comparison of the experimental VCD spectra of methyl esters with corresponding ab initio predictions, the absolute configurations of esters, and therefore of their parent acids, are unambiguously determined to be (+)-(R).     

The 39K(2) 2(3)Sigma(g)+ state: observation and analysis

The (39)K(2) 2 (3)Sigma(g) (+) state has been observed by perturbation-facilitated infrared-infrared double resonance spectroscopy and two-photon excitation. Resolved fluorescence spectra into the a (3)Sigma(u) (+) state have been recorded. The observed vibrational levels have been assigned as the v=23-25, 27, 28, 31-33, 38-45, 47, and 53 levels by comparing the observed and calculated spectra of the 2 (3)Sigma(g) (+)-->a (3)Sigma(u) (+) transitions. Molecular constants have been obtained using a global fitting procedure with a comprehensive set of experimental data. Fine and hyperfine splittings have been resolved in the excitation spectra. Perturbations between the 2 (3)Sigma(g) (+) and 2 (3)Pi(g) states were observed. The hyperfine patterns of the 2 (3)Sigma(g) (+) levels are strongly affected by the perturbation. The perturbation-free and weakly perturbed levels follow the case b(betaS) coupling scheme, while the perturbed levels follow case b(beta J) coupling. A Fermi contact constant, b(F)=65+/-10 MHz, has been obtained. Intensity anomalies of rotational lines appeared both in the 2 (3)Sigma(g) (+) approximately 2 (3)Pi(g)<--b (3)Pi(u) excitation spectra and in the 2 (3)Sigma(g) (+) approximately 2 (3)Pi(g)-->a (3)Sigma(u) (+) resolved fluorescence spectra. These intensity anomalies can be explained in terms of a quantum-mechanical interference effect.     

Structure determination of neutral MgO clusters--hexagonal nanotubes and cages

Structural information for neutral magnesium oxide clusters has been obtained by a comparison of their experimental vibrational spectra with predictions from theory. (MgO)(n) clusters with n = 3-16 have been studied in the gas phase with a tunable IR-UV two-color ionization scheme and size-selective infrared spectra have been measured. These IR spectra are compared to the calculated spectra of the global minimum structures predicted by a hybrid ab initio genetic algorithm. The comparison shows clear evidence that clusters of the composition (MgO)(3k) (k = 1-5) form hexagonal tubes, which confirm previous theoretical predictions. For the intermediate sizes (n≠ 3k) cage-like structures containing hexagonal (MgO)(3) rings are identified. Except for the cubic (MgO)(4) no evidence for bulk like structures is found.