Molecular simulation of water behaviors on crystal faces of hydroxyapatite

The water behavior on (001) and (100) crystal faces of hydroxyapatite (HAP) were studied using molecular dynamics (MD) simulations. The study showed that the water molecules between the HAP faces were under conditions of strong electrical field and high pressure, and hence formed 2–3 well-organized water layers on the crystal surfaces. These structured water layers had ice-like features. Compared with the crystallographic [100] direction of HAP, the polarity along the [001] direction was stronger, which resulted in more structured water layers on the surface. The interaction of water molecules with the calcium and phosphate sites at the HAP-water interface was also studied. The results indicated the multiple pathways of water adsorption onto the HAP surfaces. This study revealed the formation and the detailed structure of water layers on HAP surfaces and suggested that the interfacial water played an important role in stabilizing the HAP particles in aqueous solutions. Translated from Chinese Journal of Inorganic Chemistry, 2006, 22(8): 1392–1400 (in Chinese)     

羟基磷灰石界面水行为的分子模拟

本文采用分子动力学模拟(MD)方法研究了羟基磷灰石(HAP)(001)和(100)晶面上的水分子行为，发现HAP晶面间的水是处在高电场和高内压的环境下，并可在晶面处形成2～3层高度结构化的水层，这些水具有有序结构和类冰固化特征。其中在HAP晶体的[001]方向具有较强的极性，相对于[100]方向能诱导产生更多的有序结构化水层。研究发现HAP-水界面处钙和磷酸根位点分布和水分子的吸附位点相关，并且水在HAP界面上的吸附形式具有多样性。该工作揭示了HAP界面结构化水层的形成及其结构细节特征。HAP晶面附近的结构化水层可阻止溶液离子自由出入晶面，对HAP颗粒在水溶液中的动力学稳定性具有重要的影响。     

Adsorption processes of Gly and Glu amino acids on hydroxyapatite surfaces at the atomic level

The regulation mechanism of organic additives on the crystallization of inorganic crystal is fundamentally important in biomineralization. Experimentally, it was found that the amino acids glycine (Gly) and glutamic acid (Glu) could lead to the formation of rod- and plate-like hydroxyapatite (HAP) crystallites, respectively. The detailed adsorption behavior of Gly and Glu on HAP crystal faces was studied by molecular dynamics (MD) simulation. The specific adsorption sites and patterns of Gly and Glu on the (100) and (001) faces of HAP crystals were revealed at the atomic level. The amino acids adsorbed on the HAP (001) and (100) faces with their positive amino groups occupied vacant calcium sites, and their negative carboxylate groups occupied vacant P or OH sites precisely and formed an ordered adsorption layer. The atomic force microscopy pulling simulation and free energy calculation showed that Glu was much more difficult to depart from the HAP (001) face than that from the (100) face. This result indicated that Glu preferred to adsorb strongly onto the HAP (001) face, which resulted in the formation of plate-like HAP. However, Gly did not show any significantly preferential adsorption between these two HAP faces. Thus, the habits of HAP, rod-like crystallites, were not altered during the HAP crystallization in the presence of Gly. Combined with experimental results, our study demonstrated that the MD simulation of interfacial structures could improve our understanding of biological regulation in mineralization processes at the atomic level.     

Cooperative effects at water-crystalline silica interfaces strengthen surface silanol hydrogen bonding. An ab initio molecular dynamics study

Silica and silica based materials are widely used in chemistry and materials science due to their importance in many technological fields. The properties of these materials, which are crucial for their applications, are mainly determined by the presence of hydrogen bonding between surface silanols. Here, we present ab initio molecular dynamics simulations (AIMD) on different surfaces derived from the crystallographic α-quartz (100) and the α-cristobalite (001) and (101) faces, both free and at the interface with liquid water. The focus was on studying whether water adsorption can disrupt the H-bond pattern at the pristine free silica surface and how deep the perturbation due to the contact with the surface affects the structure of the water multilayer. Results highlight that the water phase is over structured at the interface with silica, as compared to water bulk. Furthermore, an apparent counterintuitive behavior has been observed for quartz (100) and cristobalite (001) surfaces: the interaction with water does not cleave the pre-existent H-bonds between the surface silanol groups. On the contrary, in several cases, it is observed that SiOH···OHSi H-bonds are even strengthened, as the result of a mutual cooperative H-donor/H-acceptor enhancement between silanols and water molecules, which may alter the adsorption capability of these silica surfaces.     

Crystal-face dependence and photoetching-induced increases of dye-sensitized photocurrents at single-crystal rutile TiO2 surfaces

Dye-sensitized photocurrents at (100)-, (001)-, and (110)-cut TiO(2) rutile surfaces were increased by photoetching of TiO(2), but the increasing ratio strongly depended on the cut crystal faces and the illumination intensity for the photoetching. For the (110)-cut surface, the photocurrent increase was moderately large and in proportion to the increase in the surface area of TiO(2) induced by the photoetching, irrespective of the illumination intensity for the photoetching. On the other hand, the photocurrent increases for the (001)- and (100)-cut surfaces, especially that for the (001)-cut surface, were prominent and largely exceeded the increases in the surface area. The results were explained by taking into account the following factors: (1) The (001)- and (100)-cut surfaces were thermodynamically unstable in contrast to the (110)-cut surface and had thicker inactive surface layers (or higher densities of surface defects), produced by surface reconstruction during heat treatment of TiO(2) at 550 degrees C in a hydrogen atmosphere for getting n-type semiconductivity. (2) Photoetching not only increased the surface area through formation of nanoholes and grooves at the surface but also effectively removed the thin inactive surface layers (or surface defects).     

Crystal nucleation, growth, and morphology of the synthetic malaria pigment beta-hematin and the effect thereon by quinoline additives: the malaria pigment as a target of various antimalarial drugs

The morphology of micrometer-sized beta-hematin crystals (synthetic malaria pigment) was determined by TEM images and diffraction, and by grazing incidence synchrotron X-ray diffraction at the air-water interface. The needle-like crystals are bounded by sharp {100} and {010} side faces, and capped by {011} and, to a lesser extent, by {001} end faces, in agreement with hemozoin (malaria pigment) crystals. The beta-hematin crystals grown in the presence of 10% chloroquine or quinine took appreciably longer to precipitate and tended to be symmetrically tapered toward both ends of the needle, due to stereoselective additive binding to {001} or {011} ledges. Evidence, but marginal, is presented that additives reduce crystal mosaic domain size along the needle axis, based on X-ray powder diffraction data. Coherent grazing exit X-ray diffraction suggests that the mosaic domains are smaller and less structurally stable than in pure crystals. IR-ATR and Raman spectra indicate molecular based differences due to a modification of surface and bulk propionic acid groups, following additive binding and a molecular rearrangement in the environment of the bulk sites poisoned by occluded quinoline. These results provided incentive to examine computationally whether hemozoin may be a target of antimalarial drugs diethylamino-alkoxyxanthones and artemisinin. A variation in activity of the former as a function of the alkoxy chain length is correlated with computed binding energy to {001} and {011} faces of beta-hematin. A model is proposed for artemisinin activity involving hemozoin nucleation inhibition via artemisinin-beta-hematin adducts bound to the principal crystal faces. Regarding nucleation of hemozoin inside the digestive vacuole of the malaria parasite, nucleation via the vacuole's membranous surface is proposed, based on a reported hemozoin alignment. As a test, a dibehenoyl-phosphatidylcholine monolayer transferred onto OTS-Si wafer nucleated far more beta-hematin crystals, albeit randomly oriented, than a reference OTS-Si.     

Anisotropy of the infrared reflectivity spectra of the salt TeEA (TCNQ)2

Single crystal reflectivity spectra of the salt TeEA (TCNQ)₂ were measured in the frequency range 50 – 13500 cm^?1 for three well-shaped crystal faces g(100), f(010), and h(001). The spectra of the faces g(100) and f(010) are practically the same but that of the face h(001) shows distinct differences. This is evidence of anisotropy of the optical properties of the TCNQ anion-radical dimer. The spectra can be interpreted on the basis of the theory of an isolated TCNQ dimer with one radical electron on it.     

Mimicking the biomolecular control of calcium oxalate monohydrate crystal growth: effect of contiguous glutamic acids

Scanning confocal interference microscopy (SCIM) and molecular dynamics (MD) simulations were used to investigate the adsorption of the synthetic polypeptide poly(l-glutamic acid) (poly-glu) to calcium oxalate monohydrate (COM) crystals and its effect on COM formation. At low concentrations (1 μg/mL), poly-glu inhibits growth most effectively in ?001? directions, indicating strong interactions of the polypeptide with {121} crystal faces. Growth in ?010? directions was inhibited only marginally by 1 μg/mL poly-glu, while growth in ?100? directions did not appear to be affected. This suggests that, at low concentrations, poly-glu inhibits lattice-ion addition to the faces of COM in the order {121} > {010} ≥ {100}. At high concentrations (6 μg/mL), poly-glu resulted in the formation of dumbbell-shaped crystals featuring concave troughs on the {100} faces. The effects on crystal growth indicate that, at high concentrations, poly-glu interacts with the faces of COM in the order {100} > {121} > {010}. This mirrors MD simulations, which predicted that poly-glu will adsorb to a {100} terrace plane (most calcium-rich) in preference to a {121} (oblique) riser plane but will adsorb to {121} riser plane in preference to an {010} terrace plane (least calcium-rich). The effects of different poly-glu concentration on COM growth (1-6 μg/mL) may be due to variations between the faces in terms of growth mechanism and/or (nano)roughness, which can affect surface energy. In addition, 1 μg/mL might not be adequate to reach the critical concentration for poly-glu to significantly pin step movement on {100} and {010} faces. Understanding the mechanisms involved in these processes is essential for the development of agents to reduce recurrence of kidney stone disease.     

LiNbO_3不同晶面的光催化产氢性能

研究了LiNbO3(001)、(100)和(110)晶面的光催化产氢性能。(001)、(100)和(110)3个晶面光催化产氢性能之比为7.8∶1.3∶1.0。LiNbO3[001]晶向存在电偶极矩和自发极化,有利于增加光生电子和空穴的分离效率,减少光生电子和空穴的复合,提高LiNbO3(001)面的光催化活性。LiNbO3(001)面的空穴有效质量最小,有利于光生空穴的迁移,从而减少光生电子和空穴的复合,也有利于光催化性能的提高。     

LiNbO3不同晶面的光催化产氢性能

研究了LiNbO₃（001）、（100）和（110）晶面的光催化产氢性能。（001）、（100）和（110）3个晶面光催化产氢性能之比为7.8：1.3：1.0。LiNbO₃[001]晶向存在电偶极矩和自发极化,有利于增加光生电子和空穴的分离效率,减少光生电子和空穴的复合,提高LiNbO₃（001）面的光催化活性。LiNbO₃（001）面的空穴有效质量最小,有利于光生空穴的迁移,从而减少光生电子和空穴的复合,也有利于光催化性能的提高。     

Small molecule‐mediated control of hydroxyapatite growth: Free energy calculations benchmarked to density functional theory

The unique, plate‐like morphology of hydroxyapatite (HAP) nanocrystals in bone lends to the hierarchical structure and functions of bone. Proteins enriched in phosphoserine (Ser‐OPO₃) and glutamic acid (Glu) residues have been proposed to regulate crystal morphology; however, the atomic‐level mechanisms remain unclear. Previous molecular dynamics studies addressing biomineralization have used force fields with limited benchmarking, especially at the water/mineral interface, and often limited sampling for the binding free energy profile. Here, we use the umbrella sampling/weighted histogram analysis method to obtain the adsorption free energy of Ser‐OPO₃ and Glu on HAP (100) and (001) surfaces to understand organic‐mediated crystal growth. The calculated organic‐water–mineral interfacial energies are carefully benchmarked to density functional theory calculations, with explicit inclusion of solvating water molecules around the adsorbate plus the Poisson–Boltzmann continuum model for long‐range solvation effects. Both amino acids adsorb more strongly on the HAP (100) face than the (001) face. Growth rate along the [100] direction should then be slower than in the [001] direction, resulting in plate‐like crystal morphology with greater surface area for the (100) than the (001) face, consistent with bone HAP crystal morphology. Thus, even small molecules are capable of regulating bone crystal growth by preferential adsorption in specific directions. Furthermore, Ser‐OPO₃ is a more effective growth modifier by adsorbing more strongly than Glu on the (100) face, providing one possible explanation for the energetically expensive process of phosphorylation of some proteins involved in bone biomineralization. The current results have broader implications for designing routes for biomimetic crystal synthesis. © 2013 Wiley Periodicals, Inc.     

Comparative study of nanoscale surface structures of calcite microcrystals using FE-SEM, AFM, and TEM.

The bulk morphology and surface features that developed upon precipitation on micrometer-size calcite powders and millimeter-size cleavage fragments were imaged by three different microscopic techniques: field-emission scanning electron microscopy (FE-SEM), transmission electron microscopy (TEM) of Pt-C replicas, and atomic force microscopy (AFM). Each technique can resolve some nanoscale surface features, but they offer different ranges of magnification and dimensional resolutions. Because sample preparation and imaging is not constrained by crystal orientation, FE-SEM and TEM of Pt-C replicas are best suited to image the overall morphology of microcrystals. However, owing to the decoration effect of Pt-C on the crystal faces, TEM of Pt-C replicas is superior at resolving nanoscale surface structures, including the development of new faces and the different microtopography among nonequivalent faces in microcrystals, which cannot be revealed by FE-SEM. In conjunction with SEM, Pt-C replica provides the evidence that crystals grow in diverse and face-specific modes. The TEM imaging of Pt-C replicas has nanoscale resolution comparable to AFM. AFM yielded quantitative information (e.g., crystallographic orientation and height of steps) of microtopographic features. In contrast to Pt-C replicas and SEM providing three-dimensional images of the crystals, AFM can only image one individual cleavage or flat surface at a time.     

Scanning Probe Microscopy and Spectroscopy of CVD Diamond Films

 The surface morphology and electronic properties of as-deposited CVD diamond films and the diamond films which have been subjected to boron ion implantation or hydrogen plasma etching have been systematically studied by high resolution scanning probe microscopy and spectroscopy techniques. AFM and STM image observations have shown that (a) both the as-deposited CVD diamond films and the boron ion implanted films exhibit similar hillock morphologies on (100) crystal faces and these surface features are formed during the deposition process; (b) boron ion implantation does not cause a discernible increase in surface roughness; (c) atomic flatness can be achieved on crystal faces by hydrogen plasma etching of the film surface. Scanning tunnelling spectroscopy analysis has indicated that (a) the as-deposited diamond films and the hydrogen plasma etched diamond films possess typical p-type semiconductor surface electronic properties; (b) the as-deposited diamond films subjected to boron implantation exhibit surface electronic properties which change from p-type semiconducting behaviour to metallic behaviour; (c) the damage in the boron implanted diamond films is restricted to the surface layers since the electronic properties revert to p-type on depth profiling.     

HTPB与Al不同晶面结合能和力学性能的分子动力学模拟

采用分子力学(MM)和分子动力学(MD)方法, 在250、300、350、400、450 K, 对固体推进剂端羟基聚丁二烯(HTPB)和铝晶胞不同晶面结构所组成的层模型在COMPASS力场下, 进行模拟计算, 求得结合能和静态力学性能(弹性系数、模量和泊松比). 模拟结果表明, 在400 K时HTPB与Al(011)面的结合能最大, 从综合力学性能优劣上看, 各个面从优到劣的排序为(011)>(221)>(001), HTPB与Al的结合能与力学性能具有对应关系, 结合能大的力学性能优异, 结合能小的力学性能较差.     

High physisorption affinity of water molecules to the hydroxylated aluminum oxide (001) surface

The adsorption mechanism of water on the hydroxylated (001) plane of α-Al(2)O(3) was studied by measuring adsorption isotherms and GCMC simulations. The experimental adsorption isotherms for three α-Al(2)O(3) samples from different sources are typical type II, in which adsorption starts sharply at low pressures, suggesting a high affinity of water to the Al(2)O(3) surface. Water molecules are adsorbed in two registered forms (bilayer structure). In the first form, water is registered at the center of three surface hydroxyl groups by directing a proton of the water. In the second form, a water molecule is adsorbed by bridging two of the first-layer water molecules through hydrogen bonding, by which a hexagonal ring network is constructed over the hydroxylated surface. The network domains are spread over the surface, and their size decreases as the temperature increases. The simulated adsorption isotherms present a characteristic two-dimensional (2D) phase diagram including a 2D critical point at 365K, which is higher than that on the hydroxylated Cr(2)O(3) surface (319 K). This fact substantiates the high affinity of water molecules to the α-Al(2)O(3) surfaces, which enhances the adsorbability originating from higher heat of adsorption. The higher affinity of water molecules to the α-Al(2)O(3) (001) plane is ascribed to the high compatibility of the crystal plane to form a hexagonal ring network of (001) plane of ice Ih.     

Interaction of CH3OH with α-MoO3 finite clusters, a theoretical study

Methanol chemisorption on various faces of molybdenum trioxide are studied by EHT calculations with model clusters. Both energy values and overlap populations show that molecular and dissociative chemisorption can be envisaged. At a distance fixed at 1.75 Å between the surface molybdenum and the methanol oxygen, the stability of the molecular chemisorption complex increases as we pass from the (100) face to the (001) and (010) ones, if the lastmentioned presents an oxygen vacancy before methanol chemisorption. On the (100) and (001) faces containing unsaturated oxygen, dissociative chemisorption leads to states of greater stability than molecular chemisorption. la contrast, if the superficial oxygen involved is saturated, the states obtained are less stable.     

Ligand functionality as a versatile tool to control the assembly behavior of preformed titania nanocrystals

Nanoparticle powders composed of surface-functionalized anatase crystals with diameters of about 3 nm self-organize into different structures upon redispersion in water. The assembly is directed by a small amount of a low-molecular-weight functional ligand (the "assembler") adsorbed on the surface of the nanoparticles. The ligand functionality determines the anisotropy of the resulting structures. Multidentate ligands, such as trizma ((HOCH(2))(3)CNH(2)) and serinol ((HOCH(2))(2)CNH(2)), with a chargeable terminal group preferentially induce the formation of anisotropic nanostructures several hundreds of nanometers in total length, whereas all the other investigated ligands (ethanolamine H(2)N(CH(2))(2)OH, glycine hydroxamate H(2)NCH(2)CONHOH, dopamine (OH)(2)C(6)H(3)(CH(2))(2)NH(3)Cl, tris (HOCH(2))(3)CCH(3)) mainly lead to uncontrolled agglomeration. Experimental data suggests that the anisotropic assembly is a consequence of the water-promoted desorption of the organic ligands from the {001} faces of the crystalline building blocks together with the dissociative adsorption of water on these crystal faces. Both processes induce the preferred attachment of the titania nanoparticles along the [001] direction. The use of polydentate and charged ligands to functionalize the surface of nanoparticles thus provides a versatile tool to control their arrangement on the nanoscale.     

Surface‐Functionalized Latex Particles as Controlling Agents for the Mineralization of Zinc Oxide in Aqueous Medium

Polystyrene latex particles modified at the surface with different hydrophilic functional groups were prepared by miniemulsion polymerization and used as controlling agents in the crystallization of zinc oxide from aqueous medium. The effects of the chemical nature of the surface functionalization and the latex concentration on the crystal growth, morphology, and crystalline structure of the resulting zinc oxide were analyzed. Micro‐ and submicrosized crystals with a broad variety of morphologies depending on the functionalization were obtained. Among the different latexes studied, the acrylic‐acid‐derived particles were shown to be a convenient system for further quantitative investigations. In this case, as the additive concentration increases, the length‐to‐width ratio (aspect ratio) of the crystals decreases systematically. Preferential adsorption of the latex particles onto the fast‐growing faces {001} of ZnO is assumed to follow a Langmuir‐type isotherm, and interaction of the adsorbed particles with the growth centers will reduce the growth rate in [001]. This leads to a quantitative relationship linking the aspect ratio to the latex concentration at constant diameter and surface chemistry of the latex. The dependence of the aspect ratio on charge density of the latex can also be modeled by an algorithm in which attractive forces between the latex particle and the ZnO surface are balanced against repulsive forces of an osmotic nature. The latter are associated with the confined volume between the crystal and latex particle surfaces.     

Photogenerated defects in shape-controlled TiO2 anatase nanocrystals: a probe to evaluate the role of crystal facets in photocatalytic processes

The promising properties of anatase TiO(2) nanocrystals exposing specific surfaces have been investigated in depth both theoretically and experimentally. However, a clear assessment of the role of the crystal faces in photocatalytic processes is still under debate. In order to clarify this issue, we have comprehensively explored the properties of the photogenerated defects and in particular their dependence on the exposed crystal faces in shape-controlled anatase. Nanocrystals were synthesized by solvothermal reaction of titanium butoxide in the presence of oleic acid and oleylamine as morphology-directing agents, and their photocatalytic performances were evaluated in the phenol mineralization in aqueous media, using O(2) as the oxidizing agent. The charge-trapping centers, Ti(3+), O(-), and O(2)(-), formed by UV irradiation of the catalyst were detected by electron spin resonance, and their abundance and reactivity were related to the exposed crystal faces and to the photoefficiency of the nanocrystals. In vacuum conditions, the concentration of trapped holes (O(-) centers) increases with increasing {001} surface area and photoactivity, while the amount of Ti(3+) centers increases with the specific surface area of {101} facets, and the highest value occurs for the sample with the worst photooxidative efficacy. These results suggest that {001} surfaces can be considered essentially as oxidation sites with a key role in the photoxidation, while {101} surfaces provide reductive sites which do not directly assist the oxidative processes. Photoexcitation experiments in O(2) atmosphere led to the formation of Ti(4+)-O(2)(-) oxidant species mainly located on {101} faces, confirming the indirect contribution of these surfaces to the photooxidative processes. Although this work focuses on the properties of TiO(2), we expect that the presented quantitative investigation may provide a new methodological tool for a more effective evaluation of the role of metal oxide crystal faces in photocatalytic processes.