光腔衰荡光谱方法研究正丙醇羟基泛频光谱和分子构象

用高灵敏的光腔衰荡光谱(Cavity Ring－Down Spectroscopy)方法探测到了正丙醇波长在620和700 nm附近的高激发泛频振动光谱,将其归属于分子不同稳定构象的O－H伸缩振动（υ＝4、5）泛频吸收,谱带用高斯函数模拟后得到的每一个峰都对应于分子的一个或几个稳定构象。用局域模理论（Local Mode Theory)对同一分子的不同泛频振动(υ值不同）进行了分析指认,求出了分子羟基振动的机械振动频率常数ωe,非谐性振动常数ωeχe。与已知甲醇的常数进行了比较,得到了令人满意的结果。用密度泛函理论（DFT）、B3LYP/6－311+G**方法优化了正丙醇各种可能的稳定构象,计算所得结果与试验值吻合。     

吲哚分子振动光谱的密度泛函理论研究

用多种密度泛函理论(DFT)方法(BLYP/6-31G^*^*,B3LYP/6-31G^*^*,B3PW91/6-31G^*^*和SVWN/6-31G^*^*)对吲哚分子的平衡几何构型进行了优化。在优化构型的基础上计算了吲哚分子的谐力场、振动基频和红外光谱强度。计算得到的振动频率与实验值比较平均偏差对四种计算方法(BLYP/6-31G^*^*,P3LYP/6-31G^*^*,B3PW91/6-31G^*^*和SVWN/6-31G^*^*)分别为16.3,40.5,45.1和26.4cm^-^1。BLYP/6-31G^*^*理论力场被用于吲哚分子的简正坐标分析计算中。根据振动率的势能分布(PEDs)对此分子的振动基频进行了理论归属。     

去氢抗坏血酸分子振动光谱的理论研究

采用RHF, MP2, DFT(B3LYP)方法, 以6-311++G**为基组研究了去氢抗坏血酸分子(DHA)的平衡几何构型和振动光谱. 计算结果表明, 采用RHF, B3LYP以及MP2 方法优化得到的几何结构以及频率值是一致的. 采用B3LYP/6-311++G**计算了DHA分子平衡构型下的谐振动力场﹑振动频率和振动强度. 使用Wilson的GF矩阵方法对DHA分子进行了简正坐标分析, 依据所得的势能分布对DHA分子的振动基频进行了合理的理论归属.     

RuN2分子结构和振动光谱的理论研究

使用钌原子相对论有效原子实势LanL2dz和密度泛函理论B3LYP方法对RuN2分子结构与分子光谱进行理论研究。结果表明RuN2分子基态为线性C∞v端配结构,基态电子态为3△,平衡几何为RRu-N=0.1910 nm,RN-1=0.1120 nm。同时首次计算给出各种稳定结构的振动频率,红外强度,拉曼活性与退极化率和偶极矩。     

腺嘌呤和质子化腺嘌呤的结构和振动光谱

用密度泛函方法B3LYP/aug-cc-pVTZ分析了腺嘌呤和质子化腺嘌呤的低能稳定异构体的结构和振动光谱. 结果发现, 对于中性腺嘌呤分子, 腺嘌呤的异构体N9H比N7H的能量低32.76 kJ·mol-1(在极化连续模型下为6.28 kJ·mol-1). 基于标度量子力场方法所得到的势能分布, 对异构体N9H的部分振动基频重新进行了归属. 在极化连续模型下, 质子化腺嘌呤分子有5种低能稳定构型, 其中N1位质子化的9-位氢腺嘌呤最为稳定. 基于振动模式分析, 对这种最稳定构型的振动基频进行了归属, 并对腺嘌呤在pH=1的高氯酸溶液中的实验拉曼光谱进行了指认.     

p-π共轭分子的氨基面外弯曲振动模的拉曼光谱

拉曼光谱是一种用途广泛的无损分子检测技术,其能够提供化学物质的分子结构指纹信息.一种面外弯曲振动模被称作wagging振动,它的信号尤为特殊,其频率和强度都非常依赖于检测环境.以乙烯胺和苯胺为例,采用密度泛函理论计算研究了p-π共轭分子分别与水簇和银簇作用的平衡结构、成键作用和拉曼光谱.结果表明,弱相互作用,如分子与金属表面的弱吸附作用以及分子与水之间的氢键作用,均使氨基面外弯曲振动模(ωNH2)的拉曼信号发生显著的变化.考虑溶剂化效应后,氢键作用减弱,计算拉曼光谱趋于一致.通过进一步对电子结构的分析,解释了面外弯曲振动信号显著增强的原因,揭示了面外弯曲振动模与分子p-π共轭作用之间的关系.     

尿素分子振动光谱的密度泛函理论研究

用密度泛函理论方法BLYP/6-31¹⁺+G(2df,2pd)对尿素分子的平衡几何构型进行了优化,并计算了该分子的谐力场.使用Wilson的GF矩阵方法,对尿素分子的振动基频进行了理论研究.根据振动频率的势能分布对此分子的振动基频进行了理论归属,计算的振动频率和能级指认均同实验结果吻合较好.     

马钱子碱分子结构和振动光谱的密度泛函理论研究

用密度泛函理论B3LYP/6-31G*方法对天然药材马钱子中的生物碱马钱子碱的几何构型进行了优化,得到马钱子碱分子的平衡结构参数,并同实验结构进行了比较.计算了上述分子在平衡构型下的振动谐力场和振动基频.针对不同的振动模式,提出了相应的校正因子,并据此对计算频率进行了校正.理论计算和实验测定频率的平均误差为19.0cm-1.根据DFT计算的振动模式和IR光谱强度值对目标分子的实验振动基频进行了完善的和合理的指认和解释.     

利用和频振动光谱研究空气/短链脂肪酸界面的分子取向

利用和频振动光谱(SFG-VS)方法检测了5种短链脂肪酸分子(乙酸、丙酸、正丁酸、正戊酸及正己酸)在空气/纯液体界面的结构, 得到了3种偏振组合(ssp, ppp, sps)下的和频振动光谱. 通过偏振选择定则对各个谱峰进行了指认和分析, 同时计算出空气/纯脂肪酸液体界面上脂肪酸分子的甲基取向角. 对比发现, 从丙酸到己酸, 分子甲基基团的界面取向角随碳链的增长略有增大. 并对其机理进行了分析.     

Numerical Study of Vibrational Energy Relaxation of O-H Bending inLiquid H2O

The relaxation of O-H bending of water molecule H2O in the liquid phase was studied with the molecular dynamics simulation approach. Both rigid and fexible solvents were used to identify the di?erent channels for the vibrational energy relaxation. It was observed that the relaxation time for the O-H bend overtone is 174 fs in the rigid solvent while it is 115 fs in the fexible solvent. The main pathway of the O-H bend overtone is transition to the bend fundamental. The relaxation time of the O-H bend fundamental was calculated as 204 fs which is comparable to the experimental value 170 fs.     

基于超快多维振动光谱技术解析分子体系的三维空间构型

超快多维振动光谱技术目前已经被广泛应用到各种凝聚态分子体系中分子的结构以及快速变化动力学过程的测量之中,并有望成为新一代解析分子体系微观结构及超快行为的常规手段。本文从两个主线出发,介绍如何利用超快多维振动光谱技术解析分子体系的三维空间构型。一方面通过测量分子内各个振动模式跃迁偶极矩间的夹角来获得分子体系内不同基团的相对空间取向,并最终确定分子的空间构型。另一方面,通过详细解析分子间振动能量转移的机理,进而将实验中测得的振动能量转移速率转化为分子之间的距离信息。     

Theoretical Study on Direction of Vibrational Transition Dipole Moment of XH Stretching Vibration in HXD

Experimental vibrational spectra of heavy light XH stretching vibrations of simple molecules have been analyzed using the local mode model. In addition, the bond dipole approach, which assumes that the transition dipole moment (TDM) of the XH stretching mode is aligned along the XH bond, has helped analyze experimental spectra. We performed theoretical calculations of the XH stretching vibrations of HOD, HND\begin{document}$^-$\end{document}, HCD, HSD, HPD\begin{document}$^-$\end{document}, and HSiD using local mode model and multi-dimensional normal modes. We found that consistent with previous notions, a localized 1D picture to treat the XH stretching vibration is valid even for analyzing the TDM tilt angle. In addition, while the TDM of the OH stretching fundamental transition tilted away from the OH bond in the direction away from the OD bond, that for the XH stretching fundamental of HSD, HND\begin{document}$^-$\end{document}, HPD\begin{document}$^-$\end{document}, HCD, and HSiD tilted away from the OH bond but toward the OD bond. This shows that bond dipole approximation may not be a good approximation for the present systems and that the heavy atom X can affect the transition dipole moment direction. The variation of the dipole moment was analyzed using the atoms-in-molecule method.     

二苯基乙二酮结构和电子光谱的理论研究

基于二苯基乙二酮结构优化,在TD-B3LYP/6-31+G*水平上讨论了两个异构体在气相和液相中的吸收和发射光谱.溶液中的计算采用可极化连续介质模型.结果表明,溶剂极性增加更有利于顺式非平面构型的形成,两个异构体的T1和S1态以及顺式非平面结构的S2态都源于双羰基上的n→π*.     

Structural Investigation of Small Nickel-Ethanol Clusters Using Vibrational Spectroscopy in a Molecular Beam

The structural identification of small nickel clusters with ethanol can help to understand fundamental steps for heterogenous catalysis. We investigate the rows [Ni_x(EtOH)₁]⁺ with x=1–4, and [Ni₂(EtOH)_y]⁺ with y=1–3 via IR photodissociation spectroscopy in a molecular beam experiment. Analyzing the CH- and OH-stretching frequencies and comparing these experimental results with density functional theory (DFT) calculations on the PW91/6-311+G(d,p) level leads to the identification of intact motifs for all clusters and hints for C−O cleavage of the ethanol in two particular cases. Furthermore, we analyze the effects of frequency shifts with the increasing clusters sizes using the results of natural bond orbitals (NBO) analyses and an energy decomposition method.     

甾族化合物的构象与活性关系

用分子力学方法对甾族抗炎药物进行了构象分析，并研究了该类化合物的构象与活性的相关性。结果表明，不仅在特写位置上的取代，而且氧原子的空间位置及空间能均是影响该类化合物活性的重要因素。     

The Conformations of Amino Acids on a Gold(111) Surface

The interactions of amino acids with inorganic surfaces are of interest for biologists and biotechnologists alike. However, the structural determinants of peptide–surface interactions have remained elusive, but are important for a structural understanding of the interactions of biomolecules with gold surfaces. Molecular dynamics simulations are a tool to analyze structures of amino acids on surfaces. However, such an approach is challenging due to lacking parameterization for many surfaces and the polarizability of metal surfaces. Herein, we report DFT calculations of amino acid fragments in vacuo and molecular dynamics simulations of the interaction of all amino acids with a gold(111) surface in explicit solvent, using the recently introduced polarizable gold force field GolP. We describe preferred orientations of the amino acids on the metal surface. We find that all amino acids preferably interact with the gold surface at least partially with their backbone, underlining an unfolding propensity of gold surfaces.     

Vibrational Spectra and Molecular Vibrational Behaviors of All-Carboatomic Rings,cyclo[18]carbon and Its Analogues

The vibrational spectra of cyclo[18]carbon and its analogues, cyclo[2n]carbon (n=3 to 15), were carefully simulated and characterized. The in-plane C−C stretching vibrations shows strong rigidity, while out-of-plane motions seem to be extremely flexible. The solvation effect can enhance signal strengths of the vibrational spectra, but does not evidently change the shape of the spectral curves. The infrared and Raman spectra of cyclo[2n]carbons are quite sensitive to ring size in the range of n=3 to 7, while the size only modestly affects peak positions and strengths for larger rings. Molecular dynamic trajectories show that the fluctuation period of the skeleton of cyclo[18]carbon is basically constant at different temperatures, and they are all about 300 fs. With increase of simulation temperature, the ring distortion due to thermal motion is notable and becomes much stronger. However, neither ring breaking nor isomerization in cyclo[18]carbon is observed during the simulations untill 298.15 K.     

Investigation on Vibrational Spectra and Structures of 4-Mercaptopyridine Monomer and Its Dihydrate

Introduction4-Mercaptopyridine(4MPY)has been always em-ployed as a model molecule and a probe molecule forRaman spectra in many studies because of its specialstructure with two active groups and its excellent signalin a Raman spectrum.Therefore,4MPY has b…