Mechanism of supported membrane disruption by antimicrobial peptide protegrin-1

While pore formation has been suggested as an important step in the membrane disruption process induced by antimicrobial peptides, membrane pore formation has never been directly visualized. We report on the dynamics of membrane disruption by antimicrobial peptide protegrin-1 (PG-1) on dimyristoyl-sn-glycero-phosphocholine-supported bilayer patches obtained via atomic force microscopy. The action of PG-1 is found to be concentration-dependent. At low PG-1 concentrations (1 < [PG-1] < 4 microg/mL), the peptide destabilizes the edge of the membrane to form fingerlike structures. At higher concentrations, PG-1 induces the formation of a sievelike nanoporous structure in the membrane. The highest degree of disruption is attained at concentrations >or=20 microg/mL, at which PG-1 disrupts the entire membrane, transforming it into stripelike structures with a well-defined and uniform stripe width. This first direct visualization of these membrane structural transformations helps elucidate the PG-1-induced membrane disruption mechanism.     

Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes

Background: The protegrins are a family of arginine- and cysteine-rich cationic peptides found in porcine leukocytes that exhibit a broad range of antimicrobial and antiviral activities. They are composed of 16–18 amino-acid residues including four cysteines, which form two disulfide linkages. To begin to understand the mechanism of action of these peptides, we set out to determine the structure of protegrin-1 (PG-1).Results: We used two-dimensional homonuclear nuclear magnetic resonance spectroscopy to study the conformation of both natural and synthetic PG-1 under several conditions. A refined three-dimensional structure of synthetic PG-1 is presented.Conclusions: Both synthetic and natural protegrin-1 form a well-defined structure in solution composed primarily of a two-stranded antiparallel β sheet, with strands connected by a β turn. The structure of PG-1 suggests ways in which the peptide may interact with itself or other molecules to form the membrane pores and the large membrane-associated assemblages observed in protegrin-treated, gram-negative bacteria.     

On the nature of the multivalency effect: a thermodynamic model

A quantitative model is proposed for the analysis of the thermodynamic parameters of multivalent interactions in dilute solutions or with immobilized multimeric receptor. The model takes into account all bound species and describes multivalent binding via two microscopic binding energies corresponding to inter- and intramolecular interactions (Delta G(o)inter and Delta G(o)intra), the relative contributions of which depend on the distribution of complexes with different numbers of occupied binding sites. The third component of the overall free energy, which we call the "avidity entropy" term, is a function of the degeneracy of bound states, Omega(i), which is calculated on the basis of the topology of interaction and the distribution of all bound species. This term grows rapidly with the number of receptor sites and ligand multivalency, it always favors binding, and explains why multivalency can overcome the loss of conformational entropy when ligands displayed at the ends of long tethers are bound. The microscopic parameters and may be determined from the observed binding energies for a set of oligovalent ligands by nonlinear fitting with the theoretical model. Here binding data obtained from two series of oligovalent carbohydrate inhibitors for Shiga-like toxins were used to verify the theory. The decavalent and octavalent inhibitors exhibit subnanomolar activity and are the most active soluble inhibitors yet seen that block Shiga-like toxin binding to its native receptor. The theory developed here in conjunction with our protocol for the optimization of tether length provides a predictive approach to design and maximize the avidity of multivalent ligands.     

Nucleation in hydrophobic cylindrical pores: a lattice model

We consider the nucleation process associated with capillary condensation of a vapor in a hydrophobic cylindrical pore (capillary evaporation). The liquid-vapor transition is described within the framework of a simple lattice model. The phase properties are characterized both at the mean-field level and with Monte Carlo simulations. The nucleation process for the liquid to vapor transition is then specifically considered. Using umbrella sampling techniques, we show that nucleation occurs through the condensation of an asymmetric vapor bubble at the pore surface. Even for highly confined systems, good agreement is found with macroscopic considerations based on classical nucleation theory. The results are discussed in the context of recent experimental work on the extrusion of water in hydrophobic pores.     

On the separation of nonadditive symmetric mixtures in nanoscopic slitlike pores: A simple model for racemic fluids

A grand canonical ensemble Monte Carlo simulation method is used to study the adsorption of nonadditive symmetric mixtures of Lennard-Jones spherical particles in nanoscopic slitlike pores. The walls of the pore are assumed to be formed by the parallel (100) planes of the model face centered cubic crystal of adjustable corrugation potential. It is demonstrated that depending on the nonadditivity effects in the mixture and the pore width the condensed phases formed inside the pore may have different structures. In particular, it is shown that the mixture may separate into layers containing only one component each and the stacking may depend on the pore width and properties of the mixture.     

On the nature of the bonding in 1:1 adducts of O2

A survey of the potential energy surface for a 1:1 copper dioxygen complex, (C(3)N(2)H(5))CuO(2), reveals two distinct states in the valence region, a singlet ((1)A(1)) and a triplet ((3)B(1)). The former spans a continuum from Cu(III)-O(2)(2-) to Cu(I)-O(2)((1)Delta(g)), while the latter spans Cu(II)-O(2)(1-) to Cu(I)-O(2)((3)Sigma(g)(-)). The point at which the potential energy curves for the two states cross marks an abrupt discontinuity in electron distribution, where the system shifts from dominant Cu(III)-O(2)(2-) character to Cu(II)-O(2)(1-). On this basis, we argue that there is no continuum between Cu(III)-peroxide and Cu(II)-superoxide: the two are represented by distinct states that differ both in symmetry and multiplicity.     

Phase behavior of ionic fluids in slitlike pores: a density functional approach for the restricted primitive model

We present a density functional theory of nonuniform ionic fluids. This theory is based on the application of the electrostatic contribution to the free energy functional arising from mean spherical approximation for a bulk restricted primitive model and from the energy route bulk equation of state. In order to employ this functional we define a reference fluid and additional averaged densities, according to the approach introduced by Gillespie, Nonner and Eisenberg [J. Phys.: Condens. Matter 14, 12129 (2002)]. In the case of bulk systems the proposed theory reduces to the mean spherical approximation equation of state, arising from the energy route and thus it predicts the first-order phase transition. We use this theory to investigate the effects of confinement on the liquid-vapor equilibria. Two cases are considered, namely an electrolyte confined to the pore with uncharged walls and with charged walls. The dependence of the capillary evaporation diagrams on the pore width and on the electrostatic potential is determined.     

Bacterial capture efficiency and antimicrobial activity of phage-functionalized model surfaces

The rise of antibiotic-resistant bacteria has directed substantial attention toward the use of bacteriophages as a means to control bacterial populations. It has been proposed that bacteriophages can be applied as a coating on surfaces in healthcare settings or on indwelling medical devices to create an antimicrobial surface. In this study, antimicrobial model surfaces functionalized with five different types of bacteriophage were prepared and characterized with X-ray photoelectron spectroscopy and atomic force microscopy. The bacterial capture efficiency of these functionalized surfaces was studied for two common bacteria, Escherichia coli and Salmonella typhimurium. Binding of the phages to a solid surface affected their biofunctionality as expressed by the capture efficiency and rate of host membrane disruption. Moreover, the size and shape of the bacteriophage and positioning of its specific binding proteins significantly affected its bacterial capture capability in the immobilized state. Symmetric bacteriophages were found to be a better choice for antibacterial surfaces compared to more asymmetric tailed bacteriophages. Immobilized phages were found to disrupt the membranes of attached bacteria and are thus proposed as a candidate for antimicrobial surfaces.     

On the nature of sigma-coupled transitions : Through-bond interactions in 1-aza-adamantane derivatives

1-Aza-adamant-4-one and a number of its derivatives, in which the CO function is modified, show absorption in the near UV region which is attributed to a sigma-coupled transition. From absorption and emission spectroscopic data it is shown that this transition has to be charge transfer in character and that it derives its intensity mainly from a local π-π* transition in the (modified) CO group. From the relative basicities, the IR spectra and the ¹³C NMR spectra it is concluded that the amount of charge transfer in the electronic ground-state is very small for the compounds studied.     

A model for the appearance of statistical pores in membranes due to selfoscillations

The aim of this paper is to demonstrate the possibility of the appearance of stochastic pores in membranes, irrespective of external reasons. Fluctuations in thickness, due to structural inhomogeneities and the dynamics of amphiphile molecules, can determine the perforation of a membrane equivalent to the appearance of a pore. The height of the energy barrier for membrane perforation (pore formation) is equal to 91 kT. The geometric profile of the pore if of an elliptical toroidal form. Generally, after membrane perforation, the pore evolves to a stable state. Other possibilities are also discussed.     

On the nature of the 'heterogeneous' catalyst: nickel-on-charcoal

Results from aromatic aminations and Kumada couplings, together with spectroscopic analyses (TEM, EDX, ICP-AES, React-IR), reveal that catalysis using nickel-on-charcoal (Ni/C) is most likely of a homogeneous rather than heterogeneous nature. In the course of a reaction with Ni/C, nickel bleed from the support was calculated to be as high as 78%. However, the existence of an equilibrium for this homogeneous species between nickel located inside vs outside the pore system of charcoal strongly favors the former, thus leaving only traces of metal detectable in solution. This accounts for virtually complete recovery of nickel on the charcoal following filtration of a reaction mixture and allows for recycling of the catalyst. TEM and EDX data were used to explain different reactivity profiles of Ni/C, which depended upon the method of reduction used to convert Ni(II)/C to Ni(0) as well as the level of nickel loading on the support.     

Density functional description of adsorption in slitlike pores modified with chain molecules: a simple model for pillaredlike materials

We propose a density functional theory to describe adsorption of Lennard-Jones fluid in slitlike pores modified by chain molecules. Specifically, the chains are bonded by their ends to the opposite pore walls, so they can form pillaredlike structure. Two models are studied. In the first model, the nonterminating segments of chains can change their configuration inside the pore upon adsorption of spherical species. In the second model, the chains configuration remains fixed, so that the system is similar to a nonuniform quenched-annealed mixture. We study capillary condensation of fluid species inside such modified pores and compare the results obtained for two models.     

Pore structure, thinning effect, and lateral diffusive dynamics of oriented lipid membranes interacting with antimicrobial peptide protegrin-1: 31P and 2H solid-state NMR study

Membrane pores that are induced in oriented membranes by an antimicrobial peptide (AMP), protegrin-1 (PG-1), are investigated by (31)P and (2)H solid state NMR spectroscopy. We incorporated a well-studied peptide, protegrin-1 (PG-1), a beta-sheet AMP, to investigate AMP-induced dynamic supramolecular lipid assemblies at different peptide concentrations and membrane compositions. Anisotropic NMR line shapes specifying toroidal pores and thinned membranes, which are formed in membrane bilayers by the binding of AMPs, have been analyzed for the first time. Theoretical NMR line shapes of lipids distributed on the surface of toroidal pores and thinned membranes reproduce reasonably well the line shape characteristics of our experimentally measured (31)P and (2)H solid-state NMR spectra of oriented lipids binding with PG-1. The lateral diffusions of lipids are also analyzed from the motionally averaged one- and two-dimensional (31)P and (2)H solid-state NMR spectra of oriented lipids that are binding with AMPs.     

Noncircular pores in model membranes: A calculation of the effect of pore geometry on the partition of a solute

The partition of a solute between a bulk phase and the rhomboidal pores of tracketched membranes is studied theoretically. The partition coefficient is concentration dependent and is reported (to first order in the bulk phase concentration) for varying solute sizes. A generalization to the case of pores of general polygonal cross section shows that narrow pore corners greatly enhance the partition coefficient due to the accumulation of solute in them. The use of an equivalent circular pore underestimates the equilibrium partition coefficient because it neglects the presence of corners.     

Application of a time-concentration model of adsorption for determination of the nature of adsorbent-adsorbate interaction

A time-concentration model of chemisorption and hydrophobic adsorption by derivatized cellulose beads allowed discrimination between adsorption processes dominated by stoichiometry and those characterized by nonstoichiometric interactions. This discrimination procedure was applied in estimating the type of interaction in the adsorption process of lactate dehydrogenase by cellulose beads, derivatized with C. I. Reactive Blue 2 or C.I. Reactive Blue 19.     

F(1H-Pyrazol-4-yl)methylene-Hydrazide derivatives: Synthesis and antimicrobial activity

This paper investigates the seismic and collapse performance of shape memory alloy (SMA) braced steel frame structures considering the effects of various brace design parameters and ultimate state of SMAs. An SMA braced steel frame building is designed to have comparable strength and stiffness with a steel-moment resisting frame selected as case study building. Then, the stiffness and ultimate deformation capacity of the SMA braces in the initially designed reference SMA braced frame are systematically varied. First, the static pushover analysis and incremental dynamic analysis (IDA) are employed to illustrate the significance of SMA brace failure consideration in seismic performance assessment of steel frames with SMA elements. Then, the influence of SMA brace initial stiffness and ultimate deformation capacity on the seismic and collapse performance of SMA braced frames are studied through pushover analyses, nonlinear response history analyses, and IDA. The results show that the SMA brace initial stiffness does not affect the interstory drift and floor absolute acceleration response at design and maximum considered earthquake (MCE) level seismic hazard or collapse capacity of the frame. However, it has considerable influence on post-event functionality of the frame. It is also found that the SMA brace ultimate deformation capacity should be at least 80% of maximum inter-story drift demand at MCE level for satisfactory seismic performance, while larger values provide higher collapse capacity for the SMA braced frame.     

Simplified crossover droplet model for adsorption of pure fluids in slit pores

We present a generalized crossover (GC) model for the excess adsorption of pure fluids at a flat solid-liquid interface, which reproduces scaling behavior of the excess adsorption in the critical region and is reduced to the classical, van der Waals-type analytical model far away from the bulk critical point. In developing this model, we used the density-functional theory (DFT) approach for the order parameter profile calculations with a generalized corresponding states model for the local free-energy density. The GC DFT model well represents the available experimental adsorption data for Kr/graphite, C2H4/graphite, C3H8/graphite, CO2/silica, and SF6/graphite systems in the entire density range 0 < rho < or = 3rhoc and temperatures up to 1.7Tc. In the critical region 0.5 rhoc < r < or = 1.5rhoc and T < or = 1.15Tc, the GC DFT model is consistent with the predictions of the asymptotic renormalization-group crossover model for the critical adsorption in a semi-infinite system developed earlier. For the excess adsorption on the critical isochore, both theories predict a scaling-law behavior Gamma proportional tau(-nu+beta), but fail to reproduce a "critical depletion" of the excess adsorption along the critical isochore of the SF6/graphite system near Tc. We show that an anomalous decrease of adsorption observed in this system at tau = T/Tc - 1 < 10(-2) can be explained by finite-size effect and develop a simplified crossover droplet (SCD) model for the excess adsorption in a slit pore. With the effective size of the pore of L = 50 nm, the SCD model reproduces all available experimental data for SF6/graphite, including the critical isochore data where tau-->0, within experimental accuracy. At L > xib (where xib is a bulk correlation length) the SCD model is transformed into the GC DFT model for semi-infinite systems. Application of the SCD model to the excess adsorption of carbon dioxide on the silica gel is also discussed.     

Porphyrin-cellulose nanocrystals: a photobactericidal material that exhibits broad spectrum antimicrobial activity

Towards our overall objectives of developing potent antimicrobial materials to combat the escalating threat to human health posed by the transmission of surface-adhering pathogenic bacteria, we have investigated the photobactericidal activity of cellulose nanocrystals that have been modified with a porphyrin-derived photosensitizer (PS). The ability of these previously synthesized porphyrin-cellulose-nanocrystals (CNC-Por (1)) to mediate bacterial photodynamic inactivation was investigated as a function of bacterial strain, incubation time and illumination time. Despite forming an insoluble suspension, CNC-Por (1) showed excellent efficacy toward the photodynamic inactivation of Acinetobacter baumannii, multidrug-resistant Acinetobacter baumannii (MDRAB) and methicillin-resistant Staphylococcus aureus (MRSA), with the best results achieving 5-6 log units reduction in colony forming units (CFUs) upon illumination with visible light (400-700 nm; 118 J cm(-2)). CNC-Por (1) mediated the inactivation of Pseudomonas aeruginosa, although at reduced activity (2-3 log units reduction). Confocal laser scanning microscopy of CNC-Por (1) after incubation with A. baumannii or S. aureus suggested a lack of internalization of the PS. Research into alternative materials such as CNC-Por (1) may lead to their application in hospitals and healthcare-related industries wherein novel materials with the capability of reducing the rates of transmission of a wide range of bacteria, particularly antibiotic resistant strains, are desired.