Adamantane-retropeptides, new building blocks for molecular channels

Novel adamantane-oxalamide derivatives, N,N′-bis(1-adamantylglycine methyl ester)oxalamide (meso-1 and rac-1), N,N′-bis(3-aminoadamantane-1-carboxylic acid methyl ester)oxalamide (2) and N,N′-bis(3-aminoadamantane-1-carboxylic acid)oxalamide (3) were prepared and structurally characterized by spectroscopic methods and X-ray analysis. Crystal packing of the structures meso-1 and rac-1 is defined by one-dimensional α-networks of hydrogen-bonded chains. The crystal structures of 2 and 3 are characterized by two-dimensional β-networks of hydrogen bonds. The oxalamide 3 crystallizes as the solvates only. In the crystal structure of 3 the protic solvent participates in hydrogen bonding with the oxalamide moieties. However, in non-protic solvents 3 crystallizes as a solvate but the solvent does not participate in hydrogen bonding. The two-dimensional network of hydrogen bonds connecting molecules of 3 generates channels, which are filled by discrete solvent molecules.     

Solid-state supramolecular array through cooperative π-π interactions of 1-(2-methoxyphenyl)-o-carborane

Dicarba-closo-dodecaborane (carborane) has received much attention as a building block for supramolecular assemblies and bioactive compounds. Among the carborane isomers, 1,2-dicarba-closo-dodecaborane (o-carborane) has unique chemical properties, including the ability of the o-carborane C-H hydrogens to form H-bonds. We have designed and synthesized 1-(2-methoxyphenyl)-o-carborane 1a to study its ability to form an intramolecular H-bond between the o-carborane C-H hydrogen and various H-bond acceptors both in solution and in the solid state. Intramolecular H-bonding ability in solution was evaluated by means of ¹H NMR spectroscopic measurements of the C-H hydrogen signal. The signal of the C-H hydrogen of 1a showed a remarkable downfield shift in CDCl₃ and various other solvents, i.e., the shift was almost solvent-independent. We suggest that 1a forms an intramolecular H-bond in these solvents. Crystal structure analysis of 1a showed a C-H?O distance of 2.05 Å and a nearly planar torsion angle C(2)-C(1)-C(7)-C(8) of 6.5°, indicating intramolecular C-H?O H-bond formation in the solid state. The crystal packing of 1a indicates that a supramolecular array is stabilized by cooperative π-π stacking interactions among the methoxyphenyl groups and by hydrophobic interactions of the o-carborane cages. DFT calculations indicate that the strength of the intramolecular H-bond of 1a is about 3.53 kcal/mol. These observations indicate the potential value of o-carborane in supramolecular chemistry and materials chemistry; it should be possible to design novel materials by utilizing both the H-bonding ability of the o-carborane C-H hydrogen and the high hydrophobicity of the o-carborane cage.     

Regioselective synthesis of triiodo-o-carboranes and tetraiodo-o-carborane

3,6-Diiodo-o-carborane 3, 3,6,9-triiodo-o-carborane 5, 3,9,12-triiodo-o-carborane 6 and 3,6,9,12-tetraiodo-o-carborane 7, which are suitable building blocks for supramolecular assemblies and carboracycles, were regioselectively synthesized by means of electrophilic iodination and introduction of iodine atoms via reconstruction of the o-carborane cage.     

Ferrocenylpyrazole—A versatile building block for hydrogen-bonded organometallic supramolecular assemblies

The crystal architectures of 5-ferrocenylpyrazole (1) and its metal complexes were investigated. Compound 1 can form non-solvated and chloroform-solvated crystals. In both cases, 1 forms a zigzag one-dimensional architecture via NH?N hydrogen bonds. The hydrogen bond exhibits a twofold disorder, which was shown to be static by solid-state ¹³C NMR. In the solvated crystal, the chloroform is released at 415 K, associated with melting of the crystal. The reaction of 1 with metal salts provided metal-centered ferrocenyl clusters [Zn(NO₃)₂(1)₄] (4), [Co(NO₃)₂(1)₄] (5), [CoCl₂(1)₄] (6), [Zn(NCS)₂(1)₂] (7), cis-[Pt(NH₃)₂(1)₂](PF₆)₂ (8), and trans-[Pt(NH₃)₂(1)₄](PF₆)₂ (9). In all of these complexes, 1 acts as a monodentate ligand. In 4, 5, and 7, the multinuclear units are joined via hydrogen bonds to form supramolecular chains. Two polymorphs were found for the crystals of 4. Both are composed of the same hydrogen-bonded chains, but their arrangements are different. 5-Ferrocenyl-1-tritylpyrazole (2) and 4-ferrocenyl-1-methylpyrazole (3) were also crystallographically characterized.     

Syntheses, characterizations and crystal structures of triorganotin(IV) derivatives with 2-mercapto-4-quinazolinone

The triorganotin(IV) derivatives of 2-mercapto-4-quinazolinone (HSqualone) of the type, R₃SnL (R = Ph 1, CH₃2, PhCH₂3, p-F-PhCH₂4, o-F-PhCH₂5, n-Bu 6), were obtained by the reaction of the R₃SnCl and HSqualone with 1:1 molar ratio in benzene. All complexes 1-6 were characterized by elemental analyses, IR, ¹H and ¹³C NMR spectroscopy and the crystal structures of complexes 1-3 were also confirmed by X-ray crystallography. The structure analyses reveal that the tin atoms of complexes 1-3 are all distorted tetrahedral geometries. Furthermore, the dimeric structures in complexes 1-3 have also been found linked by intermolecular O-H?N or N-H?O hydrogen bonding interaction. Interestingly, the dimers of complexes 2 and 3 are further linked into one-dimensional chain through intermolecular C-H?S and C-H?O weak hydrogen bonding interactions, respectively.     

Pluri-dimensional hydrogen-bonded networks of novel thiophene-introduced oligo(imidazole)s and physical properties of their charge-transfer complexes with TCNQ

Novel π-extended oligo(imidazole)s composed of imidazole and thiophene ring systems, bis(imidazolyl)thiophenes 1-4, were synthesized as new building blocks for electron-donor molecules having diverse hydrogen-bonding directionalities in order to explore hydrogen-bonded charge-transfer complexes and supramolecular assemblies. The cyclic voltammetry of these compounds showed increase of electron-donating ability compared with those of 2,2′- and 4,4′-biimidazoles. In the crystal structure, 1, 2 and 3 exhibited multi-dimensional hydrogen-bonded networks via solvent molecules including the π-π interaction. Charge-transfer complexes of 1, 2 and 4 with TCNQ were characterized as partial charge-transfer complexes with segregated stacks. The compressed pellets of the TCNQ complex of 2 showed a high electrical conductivity (σ_rt=5.2×10⁻² S cm⁻¹) at room temperature with semiconducting behavior (activation energy, E_a=71 meV).     

NMR study of 1-aryl-1,2-dicarba-closo-dodecaboranes: intramolecular C-H?O hydrogen bonding in solution

Dicarba-closo-dodecaborane(12) (carborane) has recently received much attention as a building block for supramolecular assemblies and bioactive compounds. Among carborane isomers, 1,2-dicarba-closo-dodecaborane(12) (o-carborane) has unique chemical properties, including the ability of the o-carborane C-H hydrogens to form hydrogen bonds. To evaluate intramolecular hydrogen bond formation between the o-carborane C-H hydrogen and various hydrogen bond acceptors in solution, we have designed and synthesized 1-aryl-o-carboranes 2. Intramolecular hydrogen bonding ability was evaluated by means of ¹H NMR measurement of the o-carborane C-H hydrogen signal of 2. The 1-(2-methoxyphenyl)-o-carborane derivative 2m appeared to form an intramolecular hydrogen bond between o-carborane C-H hydrogen and the oxygen atom acting as a hydrogen bonding acceptor. In this study, we present evidence for hydrogen bond formation in solution between the o-carborane C-H and hydrogen bond acceptors positioned with appropriate geometry.     

Branched supramolecular polymers formed by bifunctional cyclodextrin derivatives

Branched supramolecular polymers have been prepared from the mixture of 3-cinnamamide-α-CD (1) and 3-N^α-cinnamamidehexancarbonyl-N^?-cinnamamide-lysinamide-α-CD (3) and from the mixture of 3-cinnamamidehexanamide-α-CD (2) and 3. Compounds 1 and 2 formed a linear supramolecular polymer, whereas compound 3 having two guest moieties formed a hyperbranched supramolecular polymer. Physical properties of these supramolecular polymers were studied by viscosity measurements in aqueous solutions. When compound 3 was added to the solution of compound 2, the η_sp/C value of the mixture of 2 and 3 was found to be much higher than that of compound 2. These results indicate that compound 3 functions as a branching moiety to increase the viscosity. Supramolecular polymers consisting of compound 2 or 3 did not show the viscosity increase, whereas the mixture of 2 and 3 gave highly viscous solutions and formed fibers from the concentrated aqueous solutions. It is caused by the branching of linear supramolecular polymers with compound 3 and hydrophobic and/or hydrogen bonding interactions between supramolecular polymers.     

Crystal structure of 1,3-diphenyladamantane and trans-1,4-diphenylcyclohexane: torsion angles about C-Ph bonds in α,ω-diphenyl(alicyclic hydrocarbon)

The orientation of the two phenyl rings in α,ω-diphenylalkanes with rigid carbon skeletons is investigated through characterization of the crystal and molecular structures of 1,3-diphenyladamantane (1) and trans-1,4-diphenylcyclohexane (2). The two phenyl rings in 1 have different conformations about the C-Ph bonds, with torsion angles between the phenyl ring and the C1-C2-C3 plane of 0.65 and 71.7°. A hydrogen atom at the meta-position of one of the phenyl rings contact intermolecularly with a tertiary hydrogen atom at C5 of adamantane within the sum of van der Waals radii. Due to the helical conformation, the short CH?HC contacts (2.231 Å) construct supramolecular triple helical strands. In contrast to 1, the phenyl rings in 2 have identical configurations, with equatorial position and bisected conformation as expected from density functional calculations. The molecular packing of 2 exhibits a herringbone pattern of (aromatic)C-H?π contacts.     

Synthesis and characterization of organotin(IV) compounds with Schiff base of o-vanillin-2-thiophenoylhydrazone

Seven Schiff base adducts of organotin(IV), RSnLCl₂, which L is o-vanillin-2-thiophenoylhydrazone, and R is n-C₄H₉ (1), Me (2), Ph (3), and [R₂SnL], which L is o-vanillin-2-thiophenoylhydrazone, R is n-C₄H₉ (4), Me (5), Ph (6), PhCH₂ (7) have been synthesized. Those products were characterized by elemental analysis, IR, ¹H, ¹³C and ¹¹⁹Sn NMR spectra. The crystal and molecular structures of compounds 1, 4, and 6 have been determined by X-ray single crystal diffraction. In the crystal of compound 1 the tin atom is rendered six-coordinate in a distorted octahedral configuration by coordinating with the N atom of the Schiff base ligand, in compounds 4 and 6 the central tin atoms are five-coordinate in distorted trigonal-bipyramidal geometry and the comparison of the IR spectra reveal that disappearance of the bands assigned to carboxyl unambiguously conforms the ligand coordinate with the tin atom in enol form.     

Synthesis,structural characterization and properties of one-dimensional coordination polymers of cobalt(II)- and nickel(II)-phosphonate complexes with 2,2′-bipyridine as a secondary ligand component: Observation of both cis and trans conformations of a diphosphonic acid

Two new isomorphous cobalt and nickel phosphonates [M^II(2,2′-bipy)₂LH₄]_n[LH₂]_n, M = Co (compound 1), M = Ni (compound 2) were hydrothermally synthesized from p-xylylenediphosphonic acid (LH₄) and the corresponding metal salts with 2,2′-bipyridine as secondary ligand component. Both the compounds 1 and 2 are characterized by routine elemental analyses, IR-, electronic-spectral analyses, thermogravimetric studies and unambiguously characterized by single crystal X-ray crystallography. The structures were refined in monoclinic space group C2/c. The crystal structure consists of 1D [M(2,2′-bipy)₂LH₄]²⁺ chains and [LH₂]²⁻ anions. The flexibility of non-rigid ligand p-xylylenediphosphonic acid (LH₄) tends to adopt a rare cis conformation in the crystal structure to meet the coordination requirement of the metal center from the usual trans conformation. The hydrogen bonding in the crystal structure leads to cylindrical tubes that extend via p-xylylenediphosphonic acid resulting in a 2D supramolecular sheet throughout the crystal. Compounds 1 and 2 are additionally characterized by thermogravimetric studies.     

1D coordination polymers of silver(I) and copper(II) based on bis(N-heterocyclic carbene) ligands: Synthesis and structural studies

The alkyl chain-linked diimidazolium (or dibenzimidazolium) salts, 1,1′-diethyl-4,4′-tetramethylene-diimidazolium-diiodide (L¹H₂·I₂) and 1,1′-diethyl-3,3′-trimethylene-dibenzimidazolium-diiodide (L²H₂·I₂), and their silver(I) and copper(II) coordination polymers, [L¹AgI]_n (1) and [L²Cu₂I₄]_n (2), have been prepared and characterized. Complex 1 is a 1D helical polymer generated by bidentated carbene ligands (L¹) and Ag(I) atoms. The 1D polymer of 2 is formed by bidentated carbene ligands (L²) and coplanar quadrilateral Cu₂I₂ units. 3D supramolecular frameworks in the crystal packings of 1 and 2 are formed via intermolecular weak interactions, including C–H···π contacts, π–π interactions and C–H···I hydrogen bonds.     

Novel multiply hydrogen-bonded heterodimers based on heterocyclic ureas. Folding and stability

A new series of multiply hydrogen-bonded heterodimers have been self-assembled in chloroform-d, with ureidopyrimidone derivatives 2 and 3 and 2,7-diamino-1,6-naphthyridine diamide 4 and ureas 5 and 6 as monomers. The self-associating behavior of the compounds and the binding modules of the new heterodimers have been investigated. New tri-center hydrogen bonds have been proposed to explain the stability of the new heterodimers. 2D-NOESY, COSY and temperature variable ¹H NMR studies revealed that all the new heterodimers are substantially more stable than the ureidopyrimidone-based quadruply hydrogen-bonded homodimers in chloroform-d. As a result, heterodimers 2·4 and 3·4 were assembled quantitatively, while heterodimers 2·5, 3·5, 2·6, and 3·6 were formed in 80-85% yields. It is also revealed that intramolecular hydrogen bonds formed in monomers 5 and 6 reduce the stability of the corresponding heterodimers.     

Syntheses,characterizations and crystal structures of monomeric or macrocyclic compounds of di- or triorganotin (IV) moieties with 4,4′-thiodibenzenethiol

Six organotin compounds with 4,4′-thiodibenzenethiol (LH₂) of the type R_nSnL_4−nSnR_n (n = 3: R = Me 1, Ph 2, PhCH₂3, n = 2: R = Me 4, Ph 5, PhCH₂6) have been synthesized. All compounds were characterized by elemental analysis, IR and NMR (¹H, ¹³C, and ¹¹⁹Sn) spectra. The structures of compounds 1, 2, 4, 5 and 6 were also determined by X-ray diffraction analysis, which revealed that compounds 1 and 2 were monomeric structures, compounds 4, 5 and 6 were centrosymmetric dinuclear macrocyclic structures, and all the tin(IV) atoms are four-coordinated. Furthermore, supramolecular structures were also found in compounds 1, 2, 4, 5 and 6, which exhibit one-dimensional chains, two-dimensional networks or three-dimensional structures through intermolecular C–H?S weak hydrogen bonds (WHBs), non-bonded Sn?S interactions or C–H?π interactions.     

Four different types of hydrogen bonds observed in 1,2-bis(N-benzenesulfonylamino)benzenes due to conformational properties of the sulfonamide moiety

The crystal structures of 1,2-bis(N-benzenesulfonylamino)benzenes with secondary and/or tertiary sulfonamide groups were determined by X-ray crystallographic analysis. Every Ar-sulfonamide group existed in synclinal conformation in the crystals even though it was secondary or tertiary. Each compound showed different types of hydrogen bonds in the crystal structure. 1,2-Bis(N-benzenesulfonylamino)benzene (1) formed two double hydrogen bonds connected to the next molecules, 1-(N-benzenesulfonylamino)-2-(N-benzenesulfonyl-N-methylamino)benzene (2) contained double hydrogen bond involved by both the sulfonamide moieties, 1,2-bis(N-4-toluenesulfonylamino)benzene (3) had both intra- and intermolecular hydrogen bonds, and 1-(N-methyl-N-4-toluenesulfonylamino)-2-(N-4-toluenesulfonylamino)benzene (4) had one double hydrogen bond involved by only one sulfonamide moiety. Sulfonamides 1 and 3 formed infinite arrays of the molecules, and sulfonamides 2 and 4 formed racemic dimer of their conformational enantiomers via the hydrogen bonds.     

A facile preparation, spectroscopic and chemical properties, crystal structures, and electrochemical behavior of monocarbenium ion compounds stabilized by 3-guaiazulenyl and dihydroxyphenyl (or hydroxymethoxyphenyl) groups

Reaction of guaiazulene (8) with 2,3-dihydroxybenzaldehyde (9) in methanol in the presence of hexafluorophosphoric acid (i.e., 65% aqueous solution) at 25 °C for 2 h gives (3-guaiazulenyl)(2,3-dihydroxyphenyl)methylium hexafluorophosphate (13) in 86% yield. Similarly, reaction of 8 with 2-hydroxy-3-methoxybenzaldehyde (10) [or 3,4-dihydroxybenzaldehyde (11) or 4-hydroxy-3-methoxybenzaldehyde (12)] under the same reaction conditions as for 9 affords the corresponding monocarbenium ion compound 14 (63% yield) [or 15 (43% yield) or 16 (77% yield)], respectively, each product of which is stabilized by 3-guaiazulenyl and dihydroxyphenyl (or hydroxymethoxyphenyl) groups. A facile preparation and crystal structures as well as spectroscopic, chemical, and electrochemical properties of 13-16, possessing two interesting resonance structures, respectively, i.e., a protonated o- (or p-) benzoquinonemethide form and a 3-guaiazulenylium ion form, in a solution of acetonitrile and further, in a single crystal, are reported.     

2D and 3D supramolecular assemblies of double cyclopalladated azobenzenes realized by C-H?Cl-Pd, π?π and C-H?π interactions

The double cyclopalladated complex with azobenzene, μ-[(E)-1,2-diphenyldiazene-C^2,8, N^1,2]-di-[chloro(dimethylsulfoxide)palladium(II)]; (DMSO)PdCl(μ-C₆H₄NNC₆H₄)(DMSO)PdCl (1) and its analogous complex with DMF as ancillary ligand, (DMF)PdCl(μ-C₆H₄NNC₆H₄)(DMF)PdCl; μ-[(E)-1,2-diphenyldiazene-C^2,8,N^1,2]-di-[chloro(dimethylformamide)palladium(II)] (2a) were synthesized and the function of cyclopalladated moiety in molecular assembling in the solid state is illustrated by their crystal packings. The polymorphism of 2a and 2b is discussed. The crystal structures reveal assemblies with molecular components self-organized by C-H?Cl-Pd hydrogen bonds, π?π, and C-H?π interactions. The double cyclopalladated complexes of azobenzene, with two Pd-Cl moieties participating in the hydrogen bond formation and π-conjugated system involved in the π?π or C-H?π interactions, represent a new class of building blocks for construction of solid state supramolecular assemblies.     

Structural diversity of di and triorganotin complexes with 4-sulfanylbenzoic acid: Supramolecular structures involving intermolecular Sn?O, O-H?O or C-H?X (X = O or S) interactions

Twelve new organotin complexes with 4-sulfanylbenzoic acid of two types: R_nSn[S(C₆H₄COOH)]_4−n (I) (n = 3: R = Me 1, n-Bu 2, Ph 3; PhCH₂4; n = 2: R = Me 5; n-Bu 6, Ph 7, PhCH₂8) and R₃Sn(SC₆H₄COO)SnR₃ · mEtOH (II) (m = 0: R = Me 9, n-Bu 10, PhCH₂12; m = 2: R = Ph 11), along with the 4,4′-bipy adduct of 9, [Me₃Sn(SC₆H₄COO)SnMe₃]₂(4,4-bipy) 13, have been synthesized. The coordination behavior of 4-sulfanylbenzoic acid is monodentate in 1-8 by thiol S atom but not carboxylic oxygen atom. While, in 9-13 it behaves as multidenate by both thiol S atom and carboxylic oxygen atoms. The supramolecular structures of 6, 11 and 13 have been found to consist of 1D molecular chains built up by intermolecular O-H?O, C-H?O or C-H?S hydrogen bonds. The supramolecular aggregation of 7 is 2D network determined by two C-H?O hydrogen bonds. Extended intermolecular C-H?O interactions in the crystal lattice of 9 link the molecules into a 2D network.     

Strong phenyl-perfluorophenyl π-π stacking and C-H?F-C hydrogen bonding interactions in the crystals of the corresponding aromatic aldimines

The X-ray diffraction analysis of two co-crystals, 1·2 (aldimines 1 and 2) and 3·4 (aldimines 3 and 4), reveals that there are strong phenyl-perfluorophenyl π-π stacking and intermolecular hydrogen bonding interactions. The new perfluoroaryl-aryl face-to-face interaction of the crystalline aldimines provides a design motif for a new class of self-assembling system.