High‐Molecular‐Weight Polynucleotides by Transferase‐Catalyzed Living Chain‐Growth Polycondensation

We present terminal deoxynucleotidyl transferase‐catalyzed enzymatic polymerization (TcEP) for the template‐free synthesis of high‐molecular‐weight, single‐stranded DNA (ssDNA) and demonstrate that it proceeds by a living chain‐growth polycondensation mechanism. We show that the molecular weight of the reaction products is nearly monodisperse, and can be manipulated by the feed ratio of nucleotide (monomer) to oligonucleotide (initiator), as typically observed for living polymerization reactions. Understanding the synthesis mechanism and the reaction kinetics enables the rational, template‐free synthesis of ssDNA that can be used for a range of biomedical and nanotechnology applications.     

Electrospray‐Ionization Mass Spectrometry for Screening the Specificity and Stability of Single‐Stranded‐DNA Templated Self‐Assemblies

Supramolecular complexes consisting of a single‐stranded oligothymine ( dTn ) as the host template and an array of guest molecules equipped with a complementary diaminotriazine hydrogen‐bonding unit have been studied with electrospray‐ionization mass spectrometry (ESI‐MS). In this hybrid construct, a supramolecular stack of guest molecules is hydrogen bonded to dTn . By changing the hydrogen‐bonding motif of the DNA host template or the guest molecules, selective hydrogen bonding was proven. We were able to detect single‐stranded‐DNA (ssDNA)–guest complexes for strands with lengths of up to 20 bases, in which the highest complex mass detected was 15 kDa; these complexes constitute 20‐component self‐assembled objects. Gas‐phase breakdown experiments on single‐ and multiple‐guest–DNA assemblies gave qualitative information on the fragmentation pathways and the relative complex stabilities. We found that the guest molecules are removed from the template one by one in a highly controlled way. The stabilities of the complexes depend mainly on the molecular weight of the guest molecules, a fact suggesting that the complexes collapse in the gas phase. By mixing two different guests with the ssDNA template, a multicomponent dynamic library can be created. Our results demonstrate that ESI‐MS is a powerful tool to analyze supramolecular ssDNA complexes in great detail.     

Copper‐Free Huisgen Cycloaddition for the 14‐3‐3‐Templated Synthesis of Fusicoccin‐Peptide Conjugates

Mid‐sized molecules have emerged as an attractive chemical space and potentially provide a robust basis for the development of synthetic agents to control intracellular protein interactions. However, the limited cell permeability and chemical tractability of such agents remain to be addressed. We envisioned that target‐templated synthesis of such mid‐sized molecules might provide a solution. Here, we exploited a copper‐free Huisgen cycloaddition for template synthesis using a peptide fragment containing a 4,8‐diazacyclononyne (DACN) moiety and an azide‐containing fusicoccin derivative in the presence or absence of recombinant 14‐3‐3ζ protein in vitro. Time‐course changes in the yield of products demonstrated that the reaction was accelerated in the presence of 14‐3‐3 and one of the regioisomers was generated predominantly, supporting the template effect.     

Employment of Molecularly Imprinted Polymers to High‐Throughput Screen nNOS‐PSD‐95 Interruptions: Structure and Dynamics Investigations on Monomer–Template Complexation

Molecularly imprinted polymers (MIPs) are employed to screen nNOS‐PSD‐95 (neuronal nitric oxide synthase post‐synaptic density protein‐95) interruptions. 5‐(3,5‐Dichloro‐2‐hydroxybenzylamino)‐2‐hydroxybenzoic acid (ZL006; a potential drug candidate for the treatment of stroke, depression, and pain) is employed as a template. Four kinds of functional monomers (2‐VP: 2‐vinylpyridine; 4‐VP: 4‐vinylpyridine; MMA: methyl methacrylate; and MAAM: methacrylamide) are designed, and their complexation with ZL006 in various solvents (methanol, acetonitrile, toluene, chloroform) is investigated by molecular dynamics simulations and quantum mechanics calculations. Both 4‐VP and MAAM have stronger interactions with ZL006 than those of 2‐VP and MMA. The appropriate ratio of monomer to template is 3:1. Intermolecular hydrogen bonds play a dominant role in monomer–template complexation. Ideal solvents are toluene and chloroform, and the solvation effect on monomer–template complexation is revealed. Both molecular modeling and adsorption experiments demonstrate that as‐synthesized ZL006‐MIP with 4‐VP as a monomer has better selectivity than that employing MAAM to screen for nNOS‐PSD‐95 interruptions.     

Non‐surfactant template‐directed synthesis of SiO2‐polyimide hybrid self‐standing films with ordered mesoporous structure

The silica‐PI hybrid self‐standing films with ordered mesoporous structure have been prepared by using dibenzoyl‐L ‐tartaric acid (L ‐DBTA) as non‐surfactant template under mild sol–gel route. Polyimide matrix was obtained from polyamic acid (PAA) via thermal imidization process and the template was removed in this process. The PI‐based hybrid film with 20 wt% SiO₂ obtained from DBTA presented the ordered mesoporous channels with average pore size of about 2.0 nm and BET surface area of 1167 m²/g. FTIR and SEM studies indicated that the hydrogen bond interaction between the carboxylic groups of DBTA and benzamide bonds of PAA made the PAA possibly participate in the assembly process of the aggregates of the non‐surfactant template molecules. The mechanical, thermal and some physical properties of these hybrid films materials were also characterized. Copyright © 2010 John Wiley & Sons, Ltd.     

Nitrogen‐Doped Carbon Capsules via Poly(ionic liquid)‐Based Layer‐by‐Layer Assembly

Layer‐by‐layer (LbL) assembly technique is applied for the first time for the preparation of nitrogen‐doped carbon capsules. This approach uses colloid silica as template and two polymeric deposition components, that is, poly(ammonium acrylate) and a poly (ionic liquid) poly(3‐cyanomethyl‐1‐vinylimidazolium bromide), which acts as both the carbon precursor and nitrogen source. Nitrogen‐doped carbon capsules are prepared successfully by polymer wrapping, subsequent carbonization and template removal. The as‐synthesized carbon capsules contain ≈7 wt% of nitrogen and have a structured specific surface area of 423 m² g⁻¹. Their application as supercapacitor has been briefly introduced. This work proves that LbL assembly methodology is available for preparing carbon structures of complex morphology.     

Vernier‐Templated Synthesis,Crystal Structure,and Supramolecular Chemistry of a 12‐Porphyrin Nanoring

Vernier templating exploits a mismatch between the number of binding sites in a template and a reactant to direct the formation of a product that is large enough to bind several template units. Here, we present a detailed study of the Vernier‐templated synthesis of a 12‐porphyrin nanoring. NMR and small‐angle X‐ray scattering (SAXS) analyses show that Vernier complexes are formed as intermediates in the cyclo‐oligomerization reaction. UV/Vis/NIR titrations show that the three‐component assembly of the 12‐porphyrin nanoring figure‐of‐eight template complex displays high allosteric cooperativity and chelate cooperativity. This nanoring–template 1:2 complex is among the largest synthetic molecules to have been characterized by single‐crystal analysis. It crystallizes as a racemate, with an angle of 27° between the planes of the two template units. The crystal structure reveals many unexpected intramolecular C?H???N contacts involving the tert‐butyl side chains. Scanning tunneling microscopy (STM) experiments show that molecules of the 12‐porphyrin template complex can remain intact on the gold surface, although the majority of the material unfolds into the free nanoring during electrospray deposition.     

Cyclodextrin‐Templated Porphyrin Nanorings

α‐ and β‐Cyclodextrins have been used as scaffolds for the synthesis of six‐ and seven‐legged templates by functionalizing every primary CH₂OH with a 4‐pyridyl moiety. Although these templates are flexible, they are very effective for directing the synthesis of macrocyclic porphyrin oligomers consisting of six or seven porphyrin units. The transfer of chirality from the cyclodextrin templates to their nanoring hosts is evident from NMR and circular dichroism spectroscopy. Surprisingly, the mean effective molarity for binding the flexible α‐cyclodextrin‐based template within the six‐porphyrin nanoring (74 M ) is almost as high as for the previously studied rigid hexadentate template (180 M ). The discovery that flexible templates are effective in this system, and the availability of a template with a prime number of binding sites, open up many possibilities for the template‐directed synthesis of larger macrocycles.     

The Design,Synthesis, and Evaluation of 1,5,7‐Trisubstituted‐3‐Pyridyl‐Xanthones for Use as Insecticides Starting from Pyripyropene A

A readily accessible template of 1,5,7‐trisubstituted‐3‐pyridyl‐xanthones was designed starting from naturally occurring pyripyropene A for agrichemical development. Our originally developed Ag₂CO₃‐mediated oxidative cyclization enabled ready access to the key scaffold, 1,5,7‐trihydroxy‐3‐chloro‐xanthone. The chemo‐ and regioselective sequential introduction of four substituents to the scaffold rapidly afforded the desired, structurally diverse 1,5,7‐trisubstituted‐3‐pyridyl‐xanthones. An evaluation of insecticidal activity revealed that one of the synthesized compounds retained insecticidal activity against vetch aphid and green peach aphid. The observed insecticidal spectrum was similar to that of pyripyropene A. The developed template could be a valuable aid for future agrichemical development.     

Glycosyl‐Templated Chiral Helix Stapling of Ethynylpyridine Oligomers by Alkene Metathesis between Inter‐Pitch Side Chains

Ethynylpyridine polymers and oligomers consisting of 4‐substituted pyridine rings linked by acetylene bonds at the 2‐ and 6‐positions have been investigated. Ethynylpyridine oligomers covalently linked with a glycosyl chiral template form chiral helical complexes by intramolecular hydrogen bonding, in which the chirality of the template is translated to the helix. With a view to fixation of the chiral architecture, D /L ‐galactosyl‐ and D /L ‐mannosyl‐linked ethynylpyridine oligomers have been developed with 4‐(3‐butenyloxy)pyridine units having alkene side chains. The helical structures are successfully stapled by alkene metathesis of the side chains. Subsequent removal of the chiral templates by acidolysis produces template‐free stapled oligomers. The chiral, template‐free, stapled oligomers show chiral helicity, which is resistant to polar solvents and heating.     

Pinhole‐free large‐grained atomically smooth Au(111) substrates prepared by flame‐annealed template stripping

High‐quality atomically flat substrates are critical for the analysis and imaging of surface‐mounted ultrathin films and nanostructures. Here we report significant improvement in the preparation of large areas of atomically smooth Au(111) substrates. A thin layer of gold on silicon is flame‐annealed in air and then stripped from the template. The substrates were analyzed with X‐ray diffraction and high‐resolution atomic force microscopy (AFM). In contrast to the previously reported template stripped gold (TSG) substrates, flame‐annealed template stripped substrates reveal no detectable pinholes. The substrate surface is atomically smooth with most grains being larger than 1 µm². The entire procedure requires less than 2 h and uses readily available materials and common laboratory equipment. The resulting substrates can be stored for longer periods of time and then used immediately without need for common cleaning procedures. Evidence is provided that self‐assembled monolayers on these substrates are higher quality than those prepared with previously reported gold substrates. Copyright © 2008 John Wiley & Sons, Ltd.     

A novel superhydrophobic surface based on low‐density polyethylene/ethylene‐propylene‐diene terpolymer thermoplastic vulcanizate

A novel superhydrophobic surface based on low‐density polyethylene (LDPE)/ethylene‐propylene‐diene terpolymer (EPDM) thermoplastic vulcanizate (TPV) was successfully fabricated where the etched aluminum foil was used as template. The etched aluminum template, consisted of countless micropores and step‐like textures, was obtained by metallographic sandpaper sanding and the subsequent acid etching. The surface morphology and the hydrophobic properties of the molded TPV surface were researched by using field emission scanning electron microscope and contact angle meter, respectively. From the microstructure observation of the superhydrophobic LDPE/EPDM TPV surface, the step‐like textures obtained via molding with etched aluminum foil template and a large number of fiber‐like structures resulted from the plastic deformation of LDPE matrix could be found obviously. The obtained TPV surface exhibited remarkable superhydrophobicity, with a contact angle of 152.0° ± 0.7° and a sliding angle of 3.1° ± 0.8°.     

Active‐Metal Template Synthesis of a Halogen‐Bonding Rotaxane for Anion Recognition

The synthesis of an all‐halogen‐bonding rotaxane for anion recognition is achieved by using active‐metal templation. A flexible bis‐iodotriazole‐containing macrocycle is exploited for the metal‐directed rotaxane synthesis. Endotopic binding of a Cu^I template facilitates an active‐metal CuAAC iodotriazole axle formation reaction that captures the interlocked rotaxane product. Following copper‐template removal, exotopic coordination of a more sterically demanding rhenium(I) complex induces an inversion in the conformation of the macrocycle component, directing the iodotriazole halogen‐bond donors into the rotaxane’s interlocked binding cavity to facilitate anion recognition.     

Substitution of Adenine by Purine‐2,6‐diamine Improves the Nonenzymatic Oligomerization of Ribonucleotides on Templates Containing Thymidine

A standard DNA sequencer was used as a novel and highly efficient tool to study the template‐controlled polymerization of RNA. When labeled with appropriate fluorescent dyes, primers and their extension products could be separated and quantified with excellent sensitivity, reproducibility, and speed. The new technique was applied to compare the template‐controlled incorporation of adenosine mononucleotide 2 and its purine‐2,6‐diamine analogue 3 , the latter being capable of forming three H‐bonds with thymidine or uridine residues. The rates and yields of incorporation are similar when only one thymidine unit is available for pairing in the template (see template 6 and Table 2). However, on template 7 with two consecutive thymidine residues, purine‐2,6‐diamine is clearly ahead of adenine (see Table 3). This advantage is most pronounced when the template contains stretches of three and four thymidine moieties (see templates 8 and 9 and Tables 4 and 5, resp.).     

Template‐Directed Copying of RNA by Non‐enzymatic Ligation

The non‐enzymatic replication of the primordial genetic material is thought to have enabled the evolution of early forms of RNA‐based life. However, the replication of oligonucleotides long enough to encode catalytic functions is problematic due to the low efficiency of template copying with mononucleotides. We show that template‐directed ligation can assemble long RNAs from shorter oligonucleotides, which would be easier to replicate. The rate of ligation can be greatly enhanced by employing a 3′‐amino group at the 3′‐end of each oligonucleotide, in combination with an N‐alkyl imidazole organocatalyst. These modifications enable the copying of RNA templates by the multistep ligation of tetranucleotide building blocks, as well as the assembly of long oligonucleotides using short splint oligonucleotides. We also demonstrate the formation of long oligonucleotides inside model prebiotic vesicles, which suggests a potential route to the assembly of artificial cells capable of evolution.     

A Self‐Growing Strategy for Large‐Scale Crystal Assembly Tubes

Assembled tubular materials have attracted widespread attention due to their potential applications in catalysis, bionics, and optic‐electronics. Many versatile methods, including template assistance and self‐assembly, have been developed for fabrication of tubular materials. Here we demonstrate a self‐growing strategy to prepare large‐scale crystal assembly tubes. Addition of the template and the need for the sophisticated equipment are avoided with this method. The sidewall of the tubes is composed of a layer of polyhedral crystals that are connected together through grain coalescence. We demonstrate that the assembled tubular structure is obtained by the synergetic effect of the passivation layer and the dissolution‐recrystallization process. This facile one‐step strategy and the formation mechanism will offer guidance for fabrication of new superstructures.     

Nitrite‐Templated Synthesis of Lanthanide‐Containing [2]Rotaxanes for Anion Sensing

The first anion‐templated synthesis of a lanthanide‐containing interlocked molecule is demonstrated by utilizing a nitrite anion to template initial pseudorotaxane formation. Subsequent stoppering of the interpenetrated assembly allows for the preparation of a lanthanide‐functionalized [2]rotaxane in high yield. Following removal of the nitrite anion template, the europium [2]rotaxane host is demonstrated to recognize and sense fluoride selectively.     

Accelerated Self‐Replication under Non‐Equilibrium,Periodic Energy Delivery

Self‐replication is a remarkable phenomenon in nature that has fascinated scientists for decades. In a self‐replicating system, the original units are attracted to a template, which induce their binding. In equilibrium, the energy required to disassemble the newly assembled copy from the mother template is supplied by thermal energy. The possibility of optimizing self‐replication was explored by controlling the frequency at which energy is supplied to the system. A model system inspired by a class of light‐switchable colloids was considered where light is used to control the interactions. Conditions under which self‐replication can be significantly more effective under non‐equilibrium, cyclic energy delivery than under equilibrium constant energy conditions were identified. Optimal self‐replication does not require constant energy expenditure. Instead, the proper timing at which energy is delivered to the system is an essential controllable parameter to induce high replication rates.     

Conjugated‐Protein Mimics with Molecularly Imprinted Reconstructible and Transformable Regions that are Assembled Using Space‐Filling Prosthetic Groups

Conjugated‐protein mimics were obtained using a new molecular imprinting strategy combined with post‐imprinting modifications. An antibiotic was employed as a model template molecule, and a polymerizable template molecule was designed, which was composed of the antibiotic and two different prosthetic groups attached through a disulfide bond and Schiff base formation. After co‐polymerization with a cross‐linker, the template molecule was removed together with the prosthetic groups, yielding the apo‐type scaffold. Through conjugation of the two different prosthetic groups at pre‐determined positions within the apo‐type scaffold, the apo cavity was transformed into a functionalized holo cavity, which enables the on/off switching of the molecular recognition ability, signal transduction activity for binding events, and photoresponsive activity.     

Chirality and Template‐Mediated Induction of Helical Preferences in Achiral β‐Peptides

This study describes chirality‐ or template‐mediated helical induction in achiral β‐peptides for the first time. A strategy of end capping β‐peptides derived from β‐hGly (the smallest achiral β‐amino acid) with a chiral β‐amino acid that possesses a carbohydrate side chain (β‐Caa; C‐linked carbo β‐amino acid) or a small, robust helical template derived from β‐Caas, was adopted to investigate folding propensity. A single chiral (R)‐β‐Caa residue at the C‐ or N‐terminus in these oligomers led to a preponderance of right‐handed 12/10‐helical folds, which was reiterated more strongly in peptides capped at both the C‐ and N‐terminus. Likewise, the presence of a template (a 12/10‐helical trimer) at both the C‐ and N‐terminus resulted in a very robust helix. The propagation of the helical fold and its sustenance was found in a homo‐oligomeric sequence with as many as seven β‐hGly residues. In both cases, the induction of helicity was stronger from the N terminus, whereas an anchor at the C terminus resulted in reduced helical propensity. Although these oligomers have been theoretically predicted to favor a 12/10‐mixed helix in apolar solvents, this study provides the first experimental evidence for their existence. Diastereotopicity was found in both the methylene groups of the β‐hGly moieties due to chirality. Additionally, the β‐hGly units have shown split behavior in the conformational space to accommodate the 12/10‐helix. Thus, end capping to assist chiralty‐ or template‐mediated helical induction and stabilization in achiral β‐peptides is a very attractive strategy.