Water-soluble molecular capsules: self-assembly and binding properties

The self-assembly and characterization of water-soluble calix[4]arene-based molecular capsules (12) is reported. The assemblies are the result of ionic interactions between negatively charged calix[4]arenes 1 a and 1 b, functionalized at the upper rim with amino acid moieties, and a positively charged tetraamidiniumcalix[4]arene 2. The formation of the molecular capsules is studied by (1)H NMR spectroscopy, ESI mass spectrometry (ESI-MS), and isothermal titration calorimetry (ITC). A molecular docking protocol was used to identify potential guest molecules for the self-assembled capsule 1 a2. Experimental guest encapsulation studies indicate that capsule 1 a2 is an effective host for both charged (N-methylquinuclidinium cation) and neutral molecules (6-amino-2-methylquinoline) in water.     

Porphyrin-containing molecular capsules: metal mediated dimerization of a bis-porphyrin cavity

[reaction] A self-complementary V-shaped bis-porphyrin cavity has been synthesized that is capable of dimerization to form a capsule structure. Self-assembly of the dimer occurs via metal ion coordination and produces an internal volume for guest encapsulation.     

Guest encapsulation and self-assembly of molecular capsules in polar solvents via multiple ionic interactions

Herein we report the formation and characterization of a novel type of capsules resulting from the self-association between oppositely charged complementary building blocks in MeOH/H2O. The assembly is based on the interaction between tetraamidinium calix[4]arenes 1a-d and tetrasulfonato calix[4]arene 2. Evidence for the formation of the expected 1:1 assemblies is provided by proton NMR, ESI-MS, and ITC. The association process is fast on the NMR time scale and strongly entropy driven, with association constants in the range of 10(6) M-1. The system 1a.2 shows binding affinity toward acetylcholine, tetramethylammonium, and N-methylquinuclidinium cations.     

Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation

We have previously demonstrated that non-self-associating protein building blocks can oligomerize to form discrete supramolecular assemblies under the control of metal coordination. We show here that secondary interactions (salt bridges and hydrogen bonds) can be critical in guiding the metal-induced self-assembly of proteins. Crystallographic and hydrodynamic measurements on appropriately engineered cytochrome cb562 variants pinpoint the importance of a single salt-bridging arginine side chain in determining whether the protein monomers form a discrete Zn-induced tetrameric complex or heterogeneous aggregates. The combined ability to direct PPIs through metal coordination and secondary interactions should provide the specificity required for the construction of complex protein superstructures and the selective control of cellular processes that involve protein-protein association reactions.     

Mediation of metal chelation in cysteine-derived tetramate systems

A study of bicyclic tetramates modified with a bulky ester, which leads to steric hindrance of distal chelating atoms as a route for the alteration of metal binding ability is reported. This approach required the development of a direct method for the synthesis of different esters of cysteine from cystine, which then provided access to bicyclic tetramates by Dieckmann cyclisation. Further derivation to ketones and carboxamides by Grignard addition and transamination reactions respectively provided rapid access to a chemical library of tetramates with diverse substitution. Of interest is that bicyclic tetramate ketones and carboxamides showed different tautomeric and metal binding behaviour in solution. Significantly, in both systems, the incorporation of bulky C-5 esters at the bridging position not only reduced metal binding, but also enhanced antibacterial potencies against Gram-positive MRSA bacteria. Those tetramates with antibacterial activity which was not metal dependent showed physiochemical properties of MSA of 559–737 Ų, MW of 427–577 Da, clogP of 1.8–6.1, clogD_7.4 of −1.7 to 3.7, PSA of 83–109 Ų and relative PSA of 12–15% and were generally Lipinski rule compliant. A subset of tetramates exhibited good selectivity towards prokaryotic bacterial cells. Given that the work reported herein is synthesis-led, without the underpinning detailed mechanistic understanding of biological/biochemical mechanism, that the most active compounds occupy a small region of chemical space as defined by MW, clogP, PSA and %PSA is of interest. Overall, the bicyclic tetramate template is a promising structural motif for the development of novel antibacterial drugs, with good anti-MRSA potencies and appropriate drug-like physiochemical properties, coupled with a potential for multi-targeting mechanisms and low eukaryotic cytotoxicity.

A study of bicyclic tetramates modified with a bulky ester, which leads to steric hindrance of distal chelating atoms, is used as a route for the alteration of metal binding ability.     

Rational design and gas-phase characterization of molecular capsules by self-assembly of a symmetric hexasubstituted benzene with seven-membered lactams

A novel very simple C3-symmetric lactam has been rationally designed to self-assemble as dimers or larger platonic solid capsules. Its core flat benzene ring bears three seven-membered lactams, resulting in tripod molecules that aggregate into robust tetrameric capsules. The self-assembly process was templated by tetraethylammonium cations and proven to be reversible by ESI spectroscopy in various solvents.     

Structural and kinetic study of reversible CO2 fixation by dicopper macrocyclic complexes. From intramolecular binding to self-assembly of molecular boxes

A study of the reversible CO2 fixation by a series of macrocyclic dicopper complexes is described. The dicopper macrocyclic complexes [Cu2(OH)2(Me2p)](CF3SO3)2, 1(CF3SO3)2, and [Cu2(mu-OH)2(Me2m)](CF3SO3)2, 2(CF3SO3)2, (Scheme 1) containing terminally bound and bridging hydroxide ligands, respectively, promote reversible inter- and intramolecular CO2 fixation that results in the formation of the carbonate complexes [{Cu2(Me2p)}2(mu-CO3)2](CF3SO3)4, 4(CF3SO3)4, and [Cu2(mu-CO3)(Me2m)](CF3SO3)2, 5(CF3SO3)2. Under a N2 atmosphere the complexes evolve CO2 and revert to the starting hydroxo complexes 1(CF3SO3)2 and 2(CF3SO3)2, a reaction the rate of which linearly depends on [H2O]. In the presence of water, attempts to crystallize 5(CF3SO3)2 afford [{Cu2(Me2m)(H2O)}2(mu-CO3)2](CF3SO3)4, 6(CF3SO3)4, which appears to rapidly convert to 5(CF3SO3)2 in acetonitrile solution. [Cu2(OH)2(H3m)]2+, 7, which contains a larger macrocyclic ligand, irreversibly reacts with atmospheric CO2 to generate cagelike [{Cu2(H3m)}2(mu-CO3)2](ClO4)4, 8(ClO4)4. However, addition of 1 equiv of HClO4 per Cu generates [Cu2(H3m)(CH3CN)4]4+ (3), and subsequent addition of Et3N under air reassembles 8. The carbonate complexes 4(CF3SO3)4, 5(CF3SO3)2, 6(CF3SO3)4, and 8(ClO4)4 have been characterized in the solid state by X-ray crystallography. This analysis reveals that 4(CF3SO3)4, 6(CF3SO3)4, and 8(ClO4)4 consist of self-assembled molecular boxes containing two macrocyclic dicopper complexes, bridged by CO32- ligands. The bridging mode of the carbonate ligand is anti-anti-mu-eta1:eta1 in 4(CF3SO3)4, anti-anti-mu-eta2:eta1 in 6(CF3SO3)4 and anti-anti-mu-eta2:eta2 in 5(CF3SO3)2 and 8(ClO4)4. Magnetic susceptibility measurements on 4(CF3SO3)4, 6(CF3SO3)4, and 8(ClO4)4 indicate that the carbonate ligands mediate antiferromagnetic coupling between each pair of bridged CuII ions (J = -23.1, -108.3, and -163.4 cm-1, respectively, H = -JS1S2). Detailed kinetic analyses of the reaction between carbon dioxide and the macrocyclic complexes 1(CF3SO3)2 and 2(CF3SO3)2 suggest that it is actually hydrogen carbonate formed in aqueous solution on dissolving CO2 that is responsible for the observed formation of the different carbonate complexes controlled by the binding mode of the hydroxy ligands. This study shows that CO2 fixation can be used as an on/off switch for the reversible self-assembly of supramolecular structures based on macrocyclic dicopper complexes.     

Studies of chelation IV. Steric influences on the chelation of ditertiary phosphine complexes of group VI metal carbonyls

The preparation of the complexes [M(CO)_n(dcpe)] [M  Cr, Mo, W; n  4, 5; dcpe is ((cyclo-C₆H₁₁)₂PCH₂)₂] is reported. Attempts to prepare [M(CO)₂(dcpe)₂] by many different methods gave only cis-[M(CO)₄(dcpe)] and [M(CO)₅(dcpe)]. Heating cis-[M(CO)₄(dcpe)] with (Me₂PCH₂)₂(dmpe) gives cis-[M(CO)₂(dmpe)₂] only. These observations are explained in terms of unfavourable intramolecular non-bonded interactions between substituents at phosphorus. The rate of chelation of [M(CO)₅(dcpe)] to give cis-[M(CO)₄(dcpe)] has been measured at various temperatures in the range 360–420 K. The activation parameters indicate the dominance of a dissociative process leading to the observed steric acceleration in the chelation step. The rate of chelation is correlated satisfactorily with the ligand cone angle; the operation of an apparent saturation effect is noted.     

Metal-mediated peptide assembly: use of metal coordination to change the oligomerization state of an alpha-helical coiled-coil

Metal coordination is used to alter the oligomerization state of a designed peptide structure. The 30-residue polypeptide AQ-Pal14Pal21contains two metal-binding 4-pyridylalanine (Pal) residues on its solvent-exposed surface and exists as a very stable two-stranded alpha-helical coiled-coil. Upon the addition of Pt(en)(NO3)2, a significant conformational change to a metal-bridged, four-helix bundle is seen.     

Cooperative self-assembly and molecular binding behavior of cyclodextrin-crown ether conjugates mediated by alkali metal ions

In order to quantitatively investigate their molecular binding ability, a series of cyclodextrin-crown ether conjugates containing beta-cyclodextrin (beta-CyD) and crown ether units, i.e.N-(benzoaza-15-crown-5)acylaminomethylene tethered 6-diethylenetriamino-6-deoxy-beta-CyD, N-(benzoaza-15-crown-5)acylaminomethylene tethered 6-triethylenetetraamino-6-deoxy-beta-CyD and 4',5'-dimethylene-benzo-15-crown-5 tethered 6-diethylenetriamino-6-deoxy-beta-CyD, have been prepared as ditopic molecular receptors. Their inclusion complexation behavior with four representative fluorescent dyes, i.e. ammonium 8-anilino-1-naphthalenesulfonate (ANS), sodium 6-toluidino-2-naphthalenesulfonate (TNS), acridine red (AR) and rhodamine B (RhB), has been comprehensively investigated in aqueous NaH2PO4/Na2HPO4 or KH2PO4/K2HPO4 buffer solution (pH 7.20) by means of circular dichroism, fluorescence, and 2D NMR spectra. The results indicate that the self-assembly of crown ether modified beta-CyD mediated by potassium ion exhibits a dimeric structure, which significantly enhances the original binding ability and molecular selectivity of parent beta-CyD and its derivatives towards guest molecules through the cooperative binding of two hydrophobic CyD cavities with one guest. This cooperative binding mode of K+/CyD-crown ether systems are further confirmed by Job's experiments and 2D NMR investigations. Attributed to the positive contributions from the metal-ligated crown ether cap and K+-mediated dimerization of CyDs, the binding constant (Ks) values of CyD-crown ether conjugates toward ANS are 10-83 times higher than that of beta-CyD. The increased binding ability and molecular selectivity of CyD-crown ether conjugates are discussed from the viewpoints of size/shape-fit and multiple recognition mechanism.     

Giant molecular spoked wheels in giant voids: two-dimensional molecular self-assembly goes big

We present here the formation of giant pores in surface-confined molecular networks of a triangular-shaped dehydrobenzo-[12]annulene derivative: the diameter of the pores reaches over 7 nm and the giant pores are used as templates to accommodate a giant molecular spoked wheel, which allows us to observe rotational and adsorption-desorption dynamics of single guest molecules.     

Switching of intramolecular charge transfer in cruciforms: metal ion sensing

Three different cruciforms containing the 1,4-bis-4'-pyridylethynyl-2,5-distyrylbenzene or the 1,4-bis-phenylethynyl-2,5-distyrylbenzene unit were synthesized and investigated with respect to their metal sensing properties. Upon addition of metal cations to these cruciforms, either a bathochromic or hypsochromic shift in emission and absorption is observed. The shift depends on whether the metal coordinates preferentially to the pyridine or to the dibutylaniline branches of the cruciforms. The three cruciforms were exposed to a selection of metal cations in dichloromethane, and their emission was examined. The cruciforms show differential sensing of metal cations, that is, different metals can be specifically discerned upon exposure to three cruciforms but not when exposed to only one. The system can discern calcium from magnesium cations and silver from mercury or lithium cations.     

Dynamic self-assembly of molecular capsules via solvent polarity controlled reversible binding of nitrate anions with C3 symmetric tripodal receptors

A series of N-bridgehead tripodal receptors bearing amide functionality is reported which displays reversible binding of nitrate anions via solvent polarity controlled molecular capsule formation through a dynamic self-assembly process.     

Self-assembly of molecular capsules in polar solvents

[structure: see text] We present a novel type of molecular capsule formed by self-organization of calix[4]arenes with several oppositely charged functional groups located at their upper rims. In highly polar solvents, the complementary half-spheres form stable 1:1 complexes with association constants of up to 7 x 10(5) M(-)(1) in methanol. The cavity inside the capsules is large enough for the inclusion of small aliphatic or (hetero)aromatic guest molecules.     

Influences of peptide side chains on the metal ion binding site in metal ion-cationized peptides: Participation of aromatic rings in metal chelation

Aromatic side chains on amino acids influence the fragmentations of cationic complexes of doubly charged metal ions and singly deprotonated peptides. The metal ion interacts with an aromatic side chain and binds to adjacent amide nitrogens. When fragmentation occurs, this bonding leads to the formation of abundant metal-containing a-type ions by reactions that occur at the sites of amino acids that contain the aromatic side chain. Furthermore, formation of metal-containing immonium ions of the amino acids that contain the aromatic side chain also are formed. The abundant a-type ions may be useful in interpretation strategies in which it is necessary to locate in a peptide the position of an amino acid that bears an aromatic side chain.     

Mercapto acid compounds of tellurium(II): stabilization of tellurium---sulfur bonded compounds via intramolecular chelation

A series of tellurium (II0 compounds of general formula (RS)₂Te (R = C₆H₅---, 2-C₁₀H₇---, HOOCCH₂CH₂---, HOOCCH(Me)---, HOOCCH₂---, 2-(HOOC)C₆H₄---, HOOCCH₂CH(COOH)---, NaOOCCH₂CH₂---, NH₄OOCCH₂CH₂---) have been prepared and characterized. The tellurium compounds containing carboxylic acid or salt groups are isolated as stable, light-yellow solids which are soluble in alcohols or in water, and this stability is thought to be due to tellurium---carbonyl oxygen interactions within the molecule. Bis(benzenethio)tellurium---(II) and bis(2-naphthalenethio)tellurium(II) have been synthesized and are unstable both in the solid state and in solution. Nixed derivatives containing one aryl and one sulfide bonded to tellurium (ArTeSCH₂CH₂COOH) have also been prepared, and the reactions of these compounds with dichlorobis(benzonitrile)palladium(II) yield palladium complexes containing two tellurium ligands.     

Enantiocontrol in intramolecular cyclopropanation of diazoketones. Conformational control of metal carbene alignment

Diazo ketones with γ or δ double bonds undergo catalytic intramolecular cyclopropanation. These reactions occur with high enantiocontrol when catalyzed by copper semicorrins and bis-oxazolines, but low enantiocontrol characterizes reactions catalyzed by a broad selection of chiral dirhodium(ii) carboxamidates. The reverse stereocontrol occurs for intramolecular cyclopropanation of allylic and homoallytic diazoacetates and diazoacetamides. This divergence is explained by conformational control of carbonyl alignment (syn oranti to the metal) of the metal carbene intermediate. Dedicated to Academician of the RAS O. M. Nefedov (on his 65th birthday). Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 995–998, May, 1997.