Resorcinol-templated synthesis of a cofacial terpyridine in crystalline π-stacked columns

A resorcinol achieves a templated stereospecific and near-quantitative synthesis of a cofacial terpyridine in the solid state. The solid-state synthesis occurs in one-dimensional π-stacked columns with reactivities highly sensitive to peripheral groups attached to the template.     

Molecular-Orbital Delocalization Enhances Charge Transfer in π-Conjugated Organic Semiconductors

π-Conjugated organic semiconductors are promising materials for surface-enhanced Raman scattering (SERS)-active substrates based on the tunability of electronic structures and molecular orbitals. Herein, we investigate the effect of the temperature-mediated resonance-structure transitions of poly(3,4-ethylenedioxythiophene) (PEDOT) in poly(3,4-ethylenedioxythiophene)-poly(styrenesulfonate) (PEDOT : PSS) films on the interactions between substrate and probe molecules, thereby affecting the SERS activity. Absorption spectroscopy and density functional theory calculations show that this effect occurs mainly due to delocalization of the electron distribution in molecular orbitals, effectively promoting the charge transfer between the semiconductor and probe molecules. In this work, we investigate for the first time the effect of electron delocalization in molecular orbitals on SERS activity, which will provide new design ideas for the development of highly sensitive SERS substrates.     

Semiclassical dynamics simulations of charge transport in stacked π-systems

Charge transfer processes within stacked π-systems were examined for the stacked ethylene dimer radical cation with inclusion of a bridge containing up to three formaldehyde molecules. The electronic structure was treated at the complete active space self-consistent field and multireference configuration interaction levels. Nonadiabatic interactions between electronic and nuclear degrees of freedom were included through semiclassical surface hopping dynamics. The processes were analyzed according to fragment charge differences. Static calculations explored the dependence of the electronic coupling and on-site energies on varying geometric parameters and on the inclusion of a bridge. The dynamics simulations gave the possibility for directly observing complex charge transfer and diabatic trapping events.     

Single-molecule conductance through multiple π-π-stacked benzene rings determined with direct electrode-to-benzene ring connections

Understanding electron transport across π-π-stacked systems will help to answer fundamental questions about biochemical redox processes and benefit the design of new materials and molecular devices. Herein we employed the STM break-junction technique to measure the single-molecule conductance of multiple π-π-stacked aromatic rings. We studied electron transport through up to four stacked benzene rings held together in an eclipsed fashion via a paracyclophane scaffold. We found that the strained hydrocarbons studied herein couple directly to gold electrodes during the measurements; hence, we did not require any heteroatom binding groups as electrical contacts. Density functional theory-based calculations suggest that the gold atoms of the electrodes bind to two neighboring carbon atoms of the outermost cyclophane benzene rings in η(2) fashion. Our measurements show an exponential decay of the conductance with an increasing number of stacked benzene rings, indicating a nonresonant tunneling mechanism. Furthermore, STM tip-substrate displacement data provide additional evidence that the electrodes bind to the outermost benzene rings of the π-π-stacked molecular wires.     

Features of charge carrier concentration and mobility in π-conjugated polymers

We show the possibilities of experimental investigation of charge carrier mobility and concentration features by extraction methods of equilibrium, photoexcited and injected charge carriers in π-conjugated polymers, where, due to relatively high conductivity, the classic time-of-flight method is inappropriate.     

Pathways for fluorescence quenching in 2-aminopurine π-stacked with pyrimidine nucleobases

Fluorescent analogues of nucleobases are very useful as probes to study DNA dynamics, because natural DNA does not fluoresce significantly. In many of these analogues, such as 2-aminopurine (2AP), the fluorescence is quenched when incorporated into DNA through processes that are not well understood. This work uses theoretical studies to examine fluorescence quenching pathways in 2AP-containing dimers. The singlet excited states of π-stacked dimer systems containing 2AP and a pyrimidine base, thymine or cytosine, have been studied using ab initio computational methods. Computed relaxation pathways along the excited-state surfaces reveal novel mechanisms that can lead to fluorescence quenching in the π-stacked dimers. The placement of 2AP on the 5' or 3' terminus of the dimers has different effects on the excitation energies and the relaxation pathways on the S(1) excited state. Conical intersections between the ground and first excited states exist when 2AP is placed at the 3' side, whereas the placement of 2AP at the 5' side leads to the switching of a bright state to a dark state. Both of these processes can lead to fluorescence quenching and may contribute to the fluorescence quenching observed in 2AP when incorporated in DNA.     

Hierarchical helix of helix in the crystal: formation of variable-pitch helical π-stacked array of single-helical dinuclear metal complexes

Unique helix of helix structures were formed via intermolecular π-stacking and metal-metal interactions in the crystal of single-helical dinuclear complexes [L(2)M(2)] (M = Pd, Ni) having an acyclic bis(N(2)O(2))-type ligand. The difference in the helical winding angle of the constituents (401.7° for [L(2)Pd(2)]; 421.3° for [L(2)Ni(2)]) led to variation of the helical pitches of the helical array (7(2) helix for [L(2)Pd(2)]; 6(2) helix for [L(2)Ni(2)]).     

The steric effect of aromatic pendant groups and electrical bistability in π-stacked polymers for memory devices

In order to investigate the steric effect of aromatic pendant groups and the electrical bistability in nonconjugated polymers potentially for memory device applications, two π-stacked polymers with different steric structures are synthesized and characterized. They exhibit two conductivity states and can be switched from an initial low-conductivity (OFF) state to a high-conductivity (ON) state. Additionally, they demonstrate nonvolatile write-once-read-many-times (WORM) memory behavior with an ON/OFF current ratio up to 10(4), and flash memory behavior with an ON/OFF current ratio of approximately 10(5). Both steady-state and time-resolved fluorescence spectroscopies are used to examine the conformational change of the polymers responding to an applied external electrical voltage. The results provide useful information on different steric effects of pendant groups in polymer chains, resulting in various electrical behaviors. The possibility in realizing an "erasable" behavior through breaking π-stacked structures of pendant groups by a reversal of the electric field was also discussed on the basis of temperature-dependent fluorescence spectroscopy investigation. These results may thus offer a guideline for the design of practical polymer memory devices via tuning steric structure of π-stacked polymers.     

Geminal interaction and effect of “positive charge”

Quantum-chemical calculations of the molecules containing Cl-C-M group (M=C, N, O, F) were carried out using RHF/6-31G(d) and MP2/6-31+G(d) methods. The calculations are aimed at verifying concept on “positive charge” effect of the central atom of the group suggested as understanding of non-inductive effect of heteroatom M on the Cl (Y) atom in Y-Z-M moieties (geminal interaction). It is shown that C atom in such systems bears negative or small positive charge, and hence “positive charge” effect is excluded. The non-inductive effect originates from the polarization of Cl-C (Y-Z) bonds due to the influence of the charge on any M atom directly through space on any Y and Z.     

Synthesis of dihydroxyoligophenylenes containing π-deficient or π-excess hetero-aromatic rings and their solvatochromic behavior

Dihydroxyoligophenylenes (HO-ArPh(m)-OHs) with 9,9-dihexyl-2,7-fluorene (Ar=Flu), 2,5-dioctyloxy-1,4-benzene (Ar=Dob), pyridine (Ar=Py), or thiophene (Ar=Th) rings were synthesized by the Suzuki coupling reaction. Absorption maxima (λ_max) of HO-ArPh(m)-OHs shifted progressively toward long wavelengths due to the expansion of the π-conjugation system with an increase in the number of benzene rings. Deprotonation of the OH groups of HO-ArPh(m)-OHs by treatment with NaH caused a bathochromic shift of λ_max. The bathochromic shift of the deprotonated species increased with the donor numbers (DNs) of the solvents. The emission peak positions of NaO-ArPh(m)-ONas depended on the DNs of the solvents; therefore, the emission color could be tuned by changing the solvent.     

Encapsulation of trivalent phosphate anion within a rigidified π-stacked dimeric capsular assembly of tripodal receptor

The tris(thiourea) receptor, L, in the presence of excess H(2)PO(4)(-) has been found to encapsulate a trivalent phosphate ion within a π-stacked dimeric capsular assembly of the receptor with twelve strong H-bonds via deprotonation, as evident from the origin of a new set of signals in the (1)H NMR titration experiments.     

Control of intramolecular π-π stacking interaction in cationic iridium complexes via fluorination of pendant phenyl rings

Intramolecular π-π stacking interaction in one kind of phosphorescent cationic iridium complexes has been controlled through fluorination of the pendant phenyl rings on the ancillary ligands. Two blue-green-emitting cationic iridium complexes, [Ir(ppy)(2)(F2phpzpy)]PF(6) (2) and [Ir(ppy)(2)(F5phpzpy)]PF(6) (3), with the pendant phenyl rings on the ancillary ligands substituted with two and five fluorine atoms, respectively, have been synthesized and compared to the parent complex, [Ir(ppy)(2)(phpzpy)]PF(6) (1). Here Hppy is 2-phenylpyridine, F2phpzpy is 2-(1-(3,5-difluorophenyl)-1H-pyrazol-3-yl)pyridine, F5phpzpy is 2-(1-pentafluorophenyl-1H-pyrazol-3-yl)-pyridine, and phpzpy is 2-(1-phenyl-1H-pyrazol-3-yl)pyridine. Single crystal structures reveal that the pendant phenyl rings on the ancillary ligands stack to the phenyl rings of the ppy ligands, with dihedral angles of 21°, 18°, and 5.0° between least-squares planes for complexes 1, 2, and 3, respectively, and centroid-centroid distances of 3.75, 3.65, and 3.52 ? for complexes 1, 2, and 3, respectively, indicating progressively reinforced intramolecular π-π stacking interactions from complexes 1 to 2 and 3. Compared to complex 1, complex 3 with a significantly reinforced intramolecular face-to-face π-π stacking interaction exhibits a significantly enhanced (by 1 order of magnitude) photoluminescent efficiency in solution. Theoretical calculations reveal that in complex 3 it is unfavorable in energy for the pentafluorophenyl ring to swing by a large degree and the intramolecular π-π stacking interaction remains on the lowest triplet state.     

Theoretical study of challenging properties of intramolecularly π-stacked oligo(dibenzofulvene) organic molecular semiconductors

It has been recently argued that poly(dibenzofulvene) displays different properties for inter- and intrachain charge transport processes in the hopping regime. The charge carrier path for intramolecular transport consists in a set of π-stacked fluorene rings attached as pendant groups to the main chain, which defines a set of increasingly longer oligomers of helical shape according to the number of fluorene rings. The all-pervasive non-covalent interactions, influencing the mutual orientation of the π-stacked fluorene rings, is accounted for by dispersion-corrected methods, which had to be previously assessed against some experimental values. The present theoretical study aims to rationalize the competition between the two processes (inter- vs. intrachain) through the accurate calculation of the molecular parameters governing charge transport along the intrachain path. Finally, we perform a computationally guided molecular engineering of a set of molecules, not yet synthesized, with extended face-to-face π-stacking, which is achieved by fusing benzene rings to terminal sides of the fluorene moieties. This allows us to anticipate the performance of this new set of related materials.     

Ge(001) as a template for long-range assembly of π-stacked coronene rows

The adsorption of coronene molecules (C(24)H(12)) on the Ge(001) surface has been studied by means of scanning tunnelling microscopy (STM). Upon room temperature deposition, the coronene molecules adsorb in an upright geometry forming compact layers patterned in rows for coverages of one monolayer and less, being the only example investigated so far in which a pure aromatic hydrocarbon forms a well-ordered monolayer on a non-passivated semiconductor surface. At half monolayer, the molecular rows consist of long chains of π-stacked molecules and the distance between molecular planes is 8 ?. This configuration is maintained upon cooling the system below the transition temperature of Ge(001) (~220 K), but the molecular layer experiences also a transition from rows perpendicular to rows parallel to the Ge dimer rows. We interpret our observations in terms of a weak bonging between molecules and substrate, which facilitates the formation of large ordered domains of molecules, revealing Ge(001) as an ideal template for the growth of this and other aromatic hydrocarbons.     

Conduction modulation of π-stacked ethylbenzene wires on Si(100) with substituent groups

For the realization of molecular electronics, one essential goal is the ability to systematically fabricate molecular functional components in a well-controlled manner. Experimental techniques have been developed such that π-stacked ethylbenzene molecules can now be routinely induced to self-assemble on an H-terminated Si(100) surface at precise locations and along precise directions. Electron transport calculations predict that such molecular wires could indeed carry an electrical current, but the Si substrate may play a considerable role as a competing pathway for conducting electrons. In this work, we investigate the effect of placing substituent groups of varying electron donating or withdrawing strengths on the ethylbenzene molecules to determine how they would affect the transport properties of such molecular wires. The systems consist of a line of π-stacked ethylbenzene molecules covalently bonded to a Si substrate. The ethylbenzene line is bridging two Al electrodes to model current through the molecular stack. For our transport calculations, we employ a first-principles technique where density functional theory (DFT) is used within the non-equilibrium Green’s function formalism (NEGF). The calculated density of states suggest that substituent groups are an effective way to shift molecular states relative to the electronic states associated with the Si substrate. The electron transmission spectra obtained from the NEGF–DFT calculations reveal that the transport properties could also be extensively modulated by changing substituent groups. For certain molecules, it is possible to have a transmission peak at the Fermi level of the electrodes, corresponding to high conduction through the molecular wire with essentially no leakage into the Si substrate.     

Conformation of aromatic rings in isolable atropisomers of 2-arylindoline derivatives and kinetic evidences for π-π interaction

The equilibrium constants [K=anti/syn] of a pair of atropisomers due to restricted rotation about Csp³-Csp² bond for [2-(2-hydroxynaphthalen-1-yl)-3,3-dimethylindolin-1-yl](4-substituted phenyl)methanone were determined in some solvents. The presence of the effective π-π interaction was demonstrated by the correlation between the equilibrium constants (K) and the substituent effect of the phenyl groups (σ_p), suggesting that the ‘neutral-type’ interaction is operative.     

Do N-heterocyclic aromatic rings prefer π-stacking?

The IR-UV double resonance spectroscopy of phenylacetylene complexes with triazine, pyrazine and pyridine in the acetylene C-H group of phenylacetylene was investigated. These spectra indicate that in the complexes of triazine, pyrazine and pyridine the acetylenic group is minimally perturbed and the predominant interaction is with the π electron density of the phenyl ring of phenylacetylene. Geometries of the complexes optimized at M06-2X/aug-cc-pVDZ and MP2/aug-cc-pVDZ levels, combined with highly accurate energy calculations at the complete basis set (CBS) limit of CCSD(T), indicate the formation of π-stacked complexes in all the three cases. Additionally, a C-H...N hydrogen-bonded complex between pyridine and phenylacetylene was also observed. The present results indicate that N-heterocyclic aromatic rings favor formation of π-stacked complexes.     

Interaction of the carbon—tin bond with beta positive charge

Participation of the CSn bond in the development of beta positive charge in aqueous trifluoroethanol does not depend on solvent nucleophilicity but does depend on SnCCX stereochemistry. These observations favor a hyperconjugative interaction and predict a phenomenal acceleration in the antiperiplanar arrangement.     

Spectroscopic studies of multiple charge transfer complexes of p-toluidine with π-acceptor picric acid in different polar solvents

The charge transfer complexes of the donor p-toluidine with π-acceptor picric acid have been studied spectrophotometrically in various solvents such as acetone, ethanol, and methanol at room temperature using absorption spectrophotometer. The results indicate that formation of CTC in less polar solvent is high. The stoichiometry of the complex was found to be 1: 1 ratio by straight line method between donor and acceptor with maximum absorption bands. The data are discussed in terms of formation constant (K _CT), molar extinction coefficient (?_CT), standard free energy (ΔG°), oscillator strength (f), transition dipole moment (μ_EN), resonance energy (R _N) and ionization potential (I _D). The results indicate that the formation constant (K _CT) for the complex were shown to be dependent upon the nature of electron acceptor, donor and polarity of solvents which were used.