Trimethylsilyl derivatives of N-Boc-cytosine and their effect on I2-mediated nucleosidation of O-MTM ethers

Mono- and bis(trimethylsilyl) derivatives of N⁴-Boc-cytosine were synthesized and characterized by ¹H NMR. Only the mono(trimethylsilyl)-N⁴-Boc-cytosine participates in the iodine-mediated nucleosidation of N-Fmoc-O-methylthiomethyl serine benzyl ester to produce the cytosine nucleoamino acid, while the bis(trimethylsilyl) derivative failed to give any product. A tentative mechanistic explanation is proposed.     

Synthesis and characterization of new thermally stable poly(amide-imide)s based on bicyclo[2,2,2]oct-7-ene-2,3,5,6-tetracarboxylic diimide and aromatic diamines

N,N′-bis-(4-carboxyphenyl)bicyclo[2,2,2]oct-7-ene-2,3,5,6-tetracarboxylic diimide was prepared by reaction of bicyclo[2,2,2]oct-7-ene-2,3,5,6-tetra carboxylic dianhydride with p-aminobenzoic acid in a mixture of acetic acid and pyridine (3: 2). Polycondensation of N,N′-bis-(4-carboxyphenyl)bicyclo[2,2,2]oct-7-ene-2,3,5,6-tetracarboxylic diimide with six different aromatic diamines produced a series of new poly(amide-imide)s (PAIs) in high yields with inherent viscosities between 0.49–0.95 dl/g. All PAIs were characterized by means of elemental analysis, viscosity measurement, solubility test, FTIR spectroscopy and ¹H-NMR spectroscopy. Dynamic TGA of PAIs shows 10% weight loss temperatures from 410 to 435°C under nitrogen.     

Synthesis and characterization of some novel cadmium(II) complexes with 3-hydroxypicolinic acid (3-OHpicH): Crystal and molecular structures of [CdI(3-OHpic)(3-OHpicH)(H2O)]2, [Cd(3-OHpic)2(H2O)2] and [Cd(3-OHpic)2]n

Cadmium(II) complexes of 3-hydroxypicolinic acid, namely [CdI(3-OHpic)(3-OHpicH)(H₂O)]₂ (1), [Cd(3-OHpic)₂(H₂O)₂] (2) and [Cd(3-OHpic)₂]_n (3) were prepared and characterized by spectroscopic methods (IR, NMR) and their molecular and crystal structures were determined by X-ray crystal structure analysis. Complexes 1 and 2 were prepared in similar reaction conditions using different cadmium(II) salts: cadmium(II) iodide and cadmium(II) acetate dihydrate, respectively, while 3 was prepared by recrystallization of 2 from N,N-dimethylformamide solution. Various coordination modes of 3-OHpicH in 1–3 were established in the solid state: bidentate N,O-chelated mode in 1 and 2, monodentate mode through the carboxylate O atom from zwitterionic ligand in 1 and bidentate N,O-chelated and bridging mode in 3. In the DMF solution of all prepared complexes, only monodentate mode of 3-OHpicH binding to cadmium(II) through the carboxylate O atom was established by ¹H, ¹³C, ¹⁵N and ¹¹³Cd NMR spectroscopy.     

The first quaternary lanthanide(III) nitride iodides: NaM4N2I7 (M=La-Nd)

In attempts to synthesize lanthanide(III) nitride iodides with the formula M₂NI₃ (M=La-Nd), moisture-sensitive single crystals of the first quaternary sodium lanthanide(III) nitride iodides NaM₄N₂I₇ (orthorhombic, Pna2₁; Z=4; a=1391-1401, b=1086-1094, c=1186-1211 pm) could be obtained. The dominating structural features are chains of trans-edge linked [NM₄]⁹⁺ tetrahedra, which run parallel to the polar 2₁-axis [001]. Between the chains, direct bonding via special iodide anions generates cages, in which isolated [NaI₆]^5- octahedra are embedded. The IR spectrum of NaLa₄N₂I₇ recorded from 100 to 1000 cm^-1 shows main bands at υ=337, 373 and 489 cm^-1. With decreasing radii of the lanthanide trications these bands, which can be assigned as an influence of the vibrations of the condensed [NM₄]⁹⁺ tetrahedra, are shifted toward higher frequencies for the NaM₄N₂I₇ series (M=La-Nd), following the lanthanide contraction.     

Synthesis and structure of halogen derivatives of 9-dimethylsulfonium-7,8-dicarba-nido-undecaborane [9-Me2S-7,8-C2B9H11]

Halogenation of 9-dimethylsulfonium-7,8-dicarba-nido-undecaborane [9-SMe₂-7,8-C₂B₉H₁₁] with N-chlorosuccinimide, bromine and iodine gave the expected corresponding halogen derivatives [9-SMe₂-11-X-7,8-C₂B₉H₁₀], where X = Cl (1), Br (2), I (3). In the bromination reaction, [9-SMe₂-6-Br-7,8-C₂B₉H₁₀] (4) was isolated as a minor product being the first example of substitution at a “lower” belt of the 7,8-dicarba-nido-undecaborate cage. The use of excess of bromine resulted in dibromo derivative [9-SMe₂-6,11-Br₂-7,8-C₂B₉H₉] (5). Structures of the compounds prepared were determined using ¹¹B-¹¹B COSY NMR spectroscopy (for all halogen derivatives) and single crystal X-ray diffraction (for compounds 2, 3, and 5).     

The effect of spiroadamantane substitution on the conformational preferences of N-Me pyrrolidine and N-Me piperidine: a description based on dynamic NMR spectroscopy and ab initio correlated calculations

Dynamic NMR spectroscopy and ab initio correlated calculations revealed that the attachment of a spiroadamantane entity at the C-2 position of N-methylpyrrolidine or N-methylpiperidine induces a severe steric crowding around nitrogen, which changes the conformational space of the heterocycle resulting in: (a) the complete destabilization of the N-Me(eq) conformer in spiranic structures; in contrast the N-Me(eq) conformer corresponds to the global minimum in N-methylpyrrolidine or N-methylpiperidine. The spiroadamantane structure raises the energy of the equatorial conformer because of the severe van der Waals repulsion between the N-Me(eq) group and adamantane C-H bonds. (b) The interconversion between the only populated enantiomeric N-Me(ax) conformers ax→[eq]→ax′; the interconversion eq→ax between N-Me(eq) and N-Me(ax) conformers, which are both populated, is observed in N-methylpyrrolidine or N-methylpiperidine. (c) The raising of ring and nitrogen inversion barriers ax→ts by ∼4-6 kcal mol⁻¹. The dynamic NMR study provides evidence that the most important process required for the enantiomerization between the axial N-Me conformers in spiropiperidine 4 and spiropyrrolidine 5 are different, i.e., a nitrogen inversion in 5 (9.10 kcal mol⁻¹) and a ring inversion in 4 (15.2 kcal mol⁻¹). While an enantiomerization interconverts N-Me axial conformers in spiropiperidine 5 and spiropyrrolidine 4, substitution of the pyrrolidine ring of 5 with a C-Me group effects a diastereomerization between two N-Me axial conformers and reduces effectively the nitrogen inversion barrier according to the protonation experiments and the calculations. In general, all the calculations levels used, i.e., the MM3, B3LYP/6-31+G^∗∗ and MP2/6-311++G^∗∗//B3LYP/6-31+G^∗∗, predict correctly the different stability of the local minima; however only MP2/6-311++G^∗∗//B3LYP/6-31+G^∗∗ was found to be reliable for the calculation of the nitrogen inversion barriers.     

A squaraine-based chemosensor for Hg and Pb

A novel unsymmetrical cationic squaraine dye (USqH⁺), absorbing in the near-infrared region (600-850 nm), was synthesized by reacting a semi-squaric acid derivative 3-[4-(N,N-dioctylamino)phenyl]-4-hydroxycyclobutene-1,2-dione with the squarylium dye, bis(3-methylbenzothiazol-2-ylidene)squaraine. Addition of micromolar amounts of Hg²⁺ and Pb²⁺ to solutions of USqH⁺ in dichloromethane brings about significant changes in its absorption spectrum, resulting in a change in colour of the solution from green to pink. The absorption spectrum of the dye is relatively insensitive to other environmentally relevant metal ions, making it possible to visually detect Hg²⁺ and Pb²⁺ in the presence of other metal ions. Molecular modeling of the complexes at the density functional theory (DFT) and semiempirical PM3 levels strongly suggests that the oxygen atoms are the most likely choice for cation binding. The calculations also indicate a high affinity of Hg²⁺ and Pb²⁺ toward the formation of 2:1 complexes, which is in good agreement with the experimental results.     

Preparation and structural studies on diorganotin(IV) complexes of N-nitroso-N-phenylhydroxylaminates

Diorganotin(IV)-complexes of the N-nitroso-N-phenylhydroxylaminates (hereinafter cupf), Et₂Sn(cupf)₂ (1), Bu₂Sn(cupf)₂ (2), {[Bu₂Sn(cupf)]₂O}₂ (3), t-Bu₂Sn(cupf)₂ (4) and Oc₂Sn(cupf)₂ (5, 6) were prepared and characterised by FT-IR and Mössbauer spectroscopic measurements. The binding modes of the ligand were identified by FT-IR spectroscopy, and it was found that the ligand is coordinated in chelating or bridging mode to the organotin(IV) center. The ¹¹⁹Sn Mössbauer and FT-IR studies support the formation of trans-O_h (1-6) structures. The X-ray diffraction analysis of 4 revealed that the tin centre is in a skew-trapezoidal geometry defined by four donors derived from the cupferronato ligands and two carbon atoms from the tin-bound ^tbutyl substituents. The ¹¹⁹Sn NMR investigations indicate that in solution 4 retains its hexacoordinated nature.     

Spontaneous cyclization of (acridin-9-ylmethyl)thioureas to spiro [dihydroacridine-9′(10′H),5-imidazolidine]-2-thiones,a novel type of acridine spirocycles

Novel acridine spirocompounds, spiro[dihydroacridine-9′(10′H),5-imidazolidine]-2-thiones have been prepared by the spontaneous cyclization of 1-substituted 3-(acridin-9-ylmethyl)thioureas, which were obtained from 1-(acridin-9-yl)methanamine, N-(acridin-9-ylmethyl)propan-1-amine, and N-(acridin-9-ylmethyl)benzylamine and alkyl/aryl isothiocyanates, as continuation of our previous studies on new acridine spirocycles. Imidazolidine-2-thiones thus obtained were subsequently transformed with mesitylnitrile oxide to imidazolidine-2-one analogues, some of which partly reopened to the corresponding (acridin-9-ylmethyl)ureas. An unusual spirocyclization via a CH carbanion instead of the N-1 nitrogen has been found for 3-(acridin-9-ylmethyl)-1-(acridin-9-yl)thioureas possessing two acridine rings. Structural modifications in positions 1, 3, and 4 of the spiro ring together with ¹H, ¹³C, and ¹⁵N NMR spectroscopy and X-ray crystallography have been employed to rationalize a general propensity of various 9-substituted acridines to undergo easy spirocyclization.     

Triosmium clusters with bridging terpenic thioureato-like ligands

The reaction of acetone-4-(2-methoxy-phenyl)thiosemicarbazone with triosmium cluster Os₃(CO)₁₁(NCMe) results in the formation of the cluster with the μ₂ chelate-bridging ligand coordinated by S and N¹ atoms, which was studied by X-ray diffraction analysis. Reaction of (3aR, 3bR, 4aR, 5aS)-5a-hydroxy-3,4,4-trimethyl-3a,3b,4,4a,5,5a-hexahydrocyclopropa[3, 4]cyclopenta[1,2-c]pyrazole-1-carbothioic acid amide with Os₃(CO)₁₁(NCMe) gives rise to the complex with the bridging ligand coordinated by sulphur atom. Further transformation of the complex in hot benzene results in tautomeric rearrangement of the organic ligand and the cleavage of the pyrazolinol cycle to form an open chain tautomer. Unusual silica gel induced oxidative cleavage of the cyclopropane ring in the open chain derivative and epoxidation of cycloalcane C-C bond are observed on the air.     

New polyfluorinated porphyrazine complexes: synthesis,characterization, aggregation,and solubility

By cyclotetramerization of 2,3-bis(2,3,5,6-tetrafluoro-4-methylbenzylthio)maleonitrile in the presence of magnesium butoxide, magnesium porphyrazinate (MgPz) carrying eight (2,3,5,6-tetrafluoro-4-methylbenzylthio) functional units on the periphery positions has been synthesized. Conversion of MgPz into the metal-free derivative was achieved upon addition of a strong acid such as trifluoroacetic acid. Further reaction of this product with different metal(II) acetates led to metallo porphyrazines (MPz). The monomeric bisaxial complex FePz(py)₂ as well as the bridged complex [FePz(pyz)]_n were formed as stable complexes by reacting FePzCl with pyridine or pyrazine, respectively. These complexes were characterized by elemental analysis, together with FT-IR, ¹H NMR, ¹³C NMR, ¹⁹F NMR, UV–vis, and mass spectral data.     

Acid-Catalyzed Condensation of Benzamide with Glyoxal,and Reaction Features

Scholars from around the world have been attempting to simplify and cheapen the synthetic method for the promising high-energy compound CL-20 for decades. The lack of understanding of the formation mechanisms of hexaazaisowurtzitane derivatives―CL-20 precursors―is a barrier to solving the said problems. Here, we report the results from an in-depth study into the acid-catalyzed condensation between benzamide and glyoxal in a molar ratio of 2:1 in polar protic and aprotic solvents. Sixteen compounds were isolated and identified, of which eight were synthesized for the first time. A geminal diol, N,N’-(2,2-dihydroxyethane-1,1-diyl)dibenzamide, was synthesized. Two isomers of 1,2-bis(benzoylamino)-1,2-ethanediol were isolated and identified. N,N’-(1-oxoethane-1,2-diyl)dibenzamide and 2-oxo-2-[(phenylcarbonyl)amino]ethyl benzoate were produced that were likely formed due to the 1,2-hydride shift. N-polysubstituted 1,4-dioxane-2,3,5,6-tetramine was synthesized for the first time, whose structure may be of interest as a scaffold for new explosives. DMSO, THF and HCOOH were found to be able to engage in a reaction with benzamide, or condensation products thereof, and glyoxal under acid-catalyzed conditions.     

A novel one-pot palladium-mediated synthesis of N-[(2-hydroxyphenyl)methyl]-N-(4-phenoxy-3-pyridinyl) acetamide, the precursor to [C]PBR28, a PET biomarker for the peripheral benzodiazepine receptor

Due to an urgent need to image the peripheral benzodiazepine receptor (PBR) in living human subjects using positron emission tomography imaging, we had cause to prepare N-[(2-hydroxyphenyl)methyl]-N-(4-phenoxy-3-pyridinyl) acetamide (desmethyl-PBR28 (1)), the precursor to [¹¹C]PBR28. Herein, we report a new synthesis of the precursor in which palladium-mediated reduction of the nitro pyridine to the corresponding amino pyridine, and subsequent reductive amination, can be achieved with decaborane in a convenient one-pot procedure. This procedure is operationally simpler than the current alternatives and provides high quality precursor suitable for use in clinical applications.     

N,N-polymethylene-bisadenine complexes with d metal ions

The reaction of N⁹,N^9′-(tri or tetramethylene)-bisadenines (Ade₂C_x; x = 3 or 4) in HCl 2 M at 50 °C with MCl₂ · 2H₂O [M = Zn(II), Cd(II)] yields outer sphere compounds like the previously described [(H-Ade)₂C₃][ZnCl₄] · H₂O (3) and [(H-Ade)₂C₃]₂[Cd₂Cl₈(H₂O)₂] · 4H₂O (4) for Ade₂C₃ and the new {[(H-Ade)₂C₄][Cd₂Cl₆(H₂O)₂] · 2H₂O}_n (5) for Ade₂C₄. On the other hand, only in case of Zn(II) complexes by changing [HCl] to 0.1 M, the inner sphere compounds [H-(Ade)₂C₃(ZnCl₃)] (6) and [H-(Ade)₂C₄(ZnCl₃)] · 1.5H₂O (7) are obtained. X-ray diffraction study of compound 6, which represents the first inner sphere complex with a N⁹,N^9′-bisadenine, shows a zwitterionic form with one adenine ring protonated at N(1) while the other ring is coordinated via N(7) to a ZnCl₃ moiety as in other alkyl-adenine derivatives. In addition, with Ade₂C₄, is also possible to obtain another inner sphere complex: [(H-Ade)₂C₄(ZnCl₃)₂] · 3H₂O (8).     

Cycloacylation of N-phenyl-N′-R-thioureas with 3-aryl-2-propenoyl chlorides

Cycloalkylation of N-phenyl-N′-R-thiourea with 3-aryl-2-propenoyl chlorides in acetone gives as products 6-aryl-3-phenyl-2-(R-imino)-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one and their hydrochlorides. The same reaction carried out in acetone in the presence of K₂CO₃ leads to the formation of 6-aryl-3-phenyl-2-(R-imino)-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-ones, N-(3-aryl-2-propenoyl)-N-phenylthioureas, 3-aryl-2-propenoylanilides, and phenyl isothiocyanate.     

Synthesis of the dopamine D2/D3 receptor agonist (+)-PHNO via supercritical fluid chromatography: preliminary PET imaging study with [3-C]-(+)PHNO

Carbon-11 labeled (+)-4-[1-¹¹C]propyl-3,4,4a,5,6,10b-hexahydro-2H-naphtho[1,2-b][1,4]oxazin-9-ol ([1-¹¹C]-(+)-PHNO) is a dopamine D₃-preferring agonist radiopharmaceutical used for medical imaging by positron emission tomography (PET). We report the synthesis of (+)-PHNO using supercritical fluid chromatography for enantiomeric resolution of its norpropyl derivative, HNO, followed by propylation. (+)-HNO was used to prepare the radiolabeling precursor, (+)-trans-4-acetyl-9-triisopropylsilyloxy-2,3,4a,5,6,10b-hexahydro-4H-naphth[1,2b][1,4]oxazine, in 12 steps. Modifications to the labeling procedure were made to ensure consistent preparation of [3-¹¹C]-(+)-PHNO via [¹¹C]CH₃I. A preliminary PET imaging study was carried out with this tracer in an attempt to image dopamine receptors in brown adipose tissue (brown fat) in vivo.     

Synthesis,structure and thermal properties of polynuclear complexes with a new multidentate ligand, N,N′-bis(5-ethyl-1,3,4-thiadiazol-2-yl)-2,6-pyridinedicarboxamide

Based on N,N′-bis(5-ethyl-1,3,4-thiadiazol-2-yl)-2,6-pyridinedicarboxamide (H₂L) and inorganic Zn^II and Cd^II salts, three polynuclear complexes [Zn₆(μ₄-O)₂(L)₄] (1), [Zn₃(μ₃-O)₂(L)₂(H₂L)] (2) and [Cd₅(μ₃-O)₂(L)₃(H₂L)(CH₃OH)(DMF)] (3) have been prepared and their crystal structures have been determined by single-crystal X-ray analysis. The thermal behaviors of these complexes in nitrogen and the thermal decomposition kinetics of complex 2 in the temperature range 350–540 °C have been studied, and kinetic parameters were also obtained. Kinetic results show that the decomposition of complex 2 is double-step reaction: a 1st-order reaction (F1) is followed by an nth-order reaction (Fn).     

Moderate generation of sulfenylnitrenes from novel N-sulfenylsulfodiimides

N-Sulfenylated sulfodiimides were first prepared by the reaction of S,S-diphenyl-N-tosylsulfodiimide with arenesulfenyl chlorides under the basic conditions. Thermolysis of S,S-diphenyl-N-(2-nitrophenylsulfenyl)- and S,S-diphenyl-N-(2,4-dinitrophenylsulfenyl)sulfodiimides in the presence of olefins proceeded at 50-80 °C to give the corresponding deiminated S,S-diphenyl-N-tosylsulfimide and N-sulfenylaziridines in very good yields. 2,4-Dinitrophenyl-sulfenylnitrene was trapped by trans- and cis-1-phenylpropenes stereospecifically. The thermolysis temperature of the N-sulfenylsulfodiimides was found to be lower than N-sulfenylsulfoximide and higher than N-sulfenyliminosulfonium salt and very effective to trap the sulfenylnitrene to give the N-sulfenylaziridines in very good yields.     

Advantages of the Ns group in the reactions of N-SO2R inosines with benzylamine and with NH3

The reactivity of N¹-alkylsulfonyl- and N¹-arylsulfonyl-2′,3′,5′-tri-O-acetylinosine with benzylamine and with ¹⁵NH₃, regarding the attack on C2, has been shown to be in the order CF₃SO₂ (Tf) > 2,4-(NO₂)₂C₆H₃SO₂ (DNs) ? 4-NO₂C₆H₄SO₂ (pNs) ≈ C₆F₅SO₂ (PFBs) > 2-NO₂C₆H₄SO₂ (Ns) ? CH₃SO₂ (Ms) > 4-CH₃C₆H₄SO₂ (Ts) > 2,4,6-(CH₃)₃C₆H₂SO₂ (Mts). In spite of its intermediate reactivity, the Ns group is the most appropriate, since in this case the formation of by-products is minimised during the ring-opening and ring-closing steps of the process. Another advantage of the Ns group is thus disclosed.     

Hg-selective fluoroionophore of p-tert-butylcalix[4]arene-diaza-crown ether having pyrenylacetamide subunits

A new ionophore having two pyrenylacetamide moieties based on the p-tert-butylcalix[4]arene-diaza-crown ether has been prepared and its fluoroionophoric properties were investigated. Bis(pyrenyl) derivative was found to exhibit selective ON-OFF type sensing behavior toward Hg²⁺ ions over other representative transition and heavy metal ions. The fluorescence quenching efficiency of larger than 20-fold was observed with 100 equiv of Hg²⁺ ions and the association constant was found to be 4.5 × 10⁴ M⁻¹ in methanol. The ionophore also exhibited a very efficient quenching of excimer fluorescence selectively upon treatment with Hg²⁺ ions in 50% aqueous methanol solution. The observed Hg²⁺-selective ON-OFF type fluorescence behavior could be utilized as efficient sensing and switching devices for the design of other supramolecular systems.