Structure and dynamics of an extended conjugated NLO chromophore within an amphiphilic 4-helix bundle peptide by molecular dynamics simulation

Incorporation of extended conjugated chromophores into amphiphilic 4-helix bundle peptides has been shown experimentally to be an effective means to orient the chromphores vectorially in 2-D ensembles with high in-plane density. The designed microscopic hyperpolarizabilty of the chromophore is preserved in the macroscopic NLO response of the ensemble. We show via molecular dynamics simulation that the designed coiled-coil structure of the bundle controls the conformation and dynamics of the chromophore that are critical to optimizing its hyperpolarizability.     

Site-selective photoinduced electron transfer from alcoholic solvents to the chromophore facilitated by hydrogen bonding: a new fluorescence quenching mechanism

Solute-solvent intermolecular photoinduced electron transfer (ET) reaction was proposed to account for the drastic fluorescence quenching behaviors of oxazine 750 (OX750) chromophore in protic alcoholic solvents. According to our theoretical calculations for the hydrogen-bonded OX750-(alcohol)(n) complexes using the time-dependent density functional theory (TDDFT) method, we demonstrated that the ET reaction takes place from the alcoholic solvents to the chromophore and the intermolecular ET passing through the site-specific intermolecular hydrogen bonds exhibits an unambiguous site selectivity. In our motivated experiments of femtosecond time-resolved stimulated emission pumping fluorescence depletion spectroscopy (FS TR SEP FD), it could be noted that the ultrafast ET reaction takes place as fast as 200 fs. This ultrafast intermolecular photoinduced ET is much faster than the diffusive solvation process, and even significantly faster than the intramolecular vibrational redistribution (IVR) process of the OX750 chromophore. Therefore, the ultrafast intermolecular ET should be coupled with the hydrogen-bonding dynamics occurring in the sub-picosecond time domain. We theoretically demonstrated for the first time that the selected hydrogen bonds are transiently strengthened in the excited states for facilitating the ultrafast solute-solvent intermolecular ET reaction.     

Dynamic docking of cytochrome b5 with myoglobin and alpha-hemoglobin: heme-neutralization "squares" and the binding of electron-transfer-reactive configurations

Intracomplex electron transfer (ET) occurs most often in intrinsically transient, low affinity complexes. As a result, the means by which adequate specificity and reactivity are obtained to support effective ET is still poorly understood. We report here on two such ET complexes: cytochrome b5 (cyt b5) in reaction with its physiological partners, myoglobin (Mb) and hemoglobin (Hb). These complexes obey the Dynamic Docking (DD) paradigm: a large ensemble of weakly bound protein-protein configurations contribute to binding in the rapid-exchange limit, but only a few are ET-active. We report the ionic-strength dependence of the second-order rate constant, k2, for photoinitiated ET from within all four combinations of heme-neutralized Zn deuteroporphyrin-substituted Mb/alphaHb undergoing ET with cyt b5, the four "corners" of a "heme-neutralization square". These experiments provide insights into the relative importance of both global and local electrostatic contributions to the binding of reactive configurations, which are too few to be observed directly. To interpret the variations of k2 arising from heme neutralization, we have developed a procedure by which comparisons of the ET rate constants for a heme-neutralization square permit us to decompose the free energy of reactive binding into individual local electrostatic contributions associated with interactions between (i) the propionates of the two hemes and (ii) the heme of each protein with the polypeptide of its partner. Most notably, we find the contribution from the repulsion between propionates of partner hemes to the reactive binding free energy to be surprisingly small, DeltaG(Hb) approximately +1 kcal/mol at ambient temperature, 18 mM ionic strength, and we speculate about possible causes of this observation. To confirm the fundamental assumption of these studies, that the structure of a heme-neutralized protein is unaltered either by substitution of Zn or by heme neutralization, we have obtained the X-ray structure of ZnMb prepared with the porphyrin dimethyl ester and find it to be nearly isostructural with the native protein.     

Synergism in multicomponent self-propagating molecular assemblies

Multicomponent self-propagating molecular assemblies (SPMAs) have been generated from an organic chromophore, a redox-active polypyridyl complex, and PdCl(2). The structure of the multicomponent SPMA is not a linear combination of two assemblies generated with a single molecular constituent. Surface-confined assemblies formed from only the organic chromophore and PdCl(2) are known to follow linear growth, whereas the combination of polypyridyl complexes and PdCl(2) results in exponential growth. The present study demonstrates that an iterative deposition of both molecular building blocks with PdCl(2) results in an exponentially growing assembly. The nature of the assembly mechanism is dictated by the polypyridyl complex and overrides the linear growth process of the organic component. Relatively smooth, multicomponent SPMAs have been obtained with a thickness of ～20 nm on silicon, glass, and indium-tin oxide (ITO) coated glass. Detailed information of the structure and of the surface-assembly chemistry were obtained using transmission optical (UV/Vis) spectroscopy, ellipsometry, atomic force microscopy (AFM), synchrotron X-ray reflectivity (XRR), and electrochemistry.     

An amide-linked chromophore-catalyst assembly for water oxidation

The synthesis and analysis of a new amide-linked, dinuclear [Ru(bpy)(2)(bpy-ph-NH-CO-trpy)Ru(bpy)(OH(2))](4+) (bpy = 2,2'-bipyridine; bpy-ph-NH-CO-trpy = 4-(2,2':6',2"-terpyridin-4'-yl)-N-[(4'-methyl-2,2'-bipyridin-4-yl)methyl]benzamide) assembly that incorporates both a light-harvesting chromophore and a water oxidation catalyst are described. With the saturated methylene linker present, the individual properties of both the chromophore and catalyst are retained including water oxidation catalysis and relatively slow energy transfer from the chromophore excited state to the catalyst.     

Synergistic Effects of Metals in a Promising RuII−PtII Assembly for a Combined Anticancer Approach: Theoretical Exploration of the Photophysical Properties

Ru^II?Pt^II complexes are a class of bioactive molecules of interest as anticancer agents that combine a light‐absorbing chromophore with a cisplatin‐like unit. The results of a DFT and TDDFT investigation of a Ru^II complex and its conjugate with a cis‐PtCl₂ moiety reveal that a synergistic effect of the metals makes the assembly a promising multitarget anticancer drug. Inspection of type I and type II photoreactions and spin–orbit coupling computations reveals that the cis‐PtCl₂ moiety improves the photophysical properties of the Ru^II chromophore, ensuring efficient singlet oxygen generation and making the assembly suitable for photodynamic therapy. At the same time, the Ru^II chromophore promotes a new alternative activation mechanism of the Pt^II ligand via a triplet metal‐to‐ligand charge transfer (³M LCT) state, before reaching the biological target. The importance of the supramolecular architecture is accurately derived, opening interesting new perspectives on the use of bimetallic Ru^II?Pt^II assemblies in a combined anticancer approach.     

Hybrid photoactive assemblies: electron injection from host-guest complexes into semiconductor nanoparticles

Novel ternary assemblies consisting of fully encapsulated host-guest complexes (hemicarceplexes) and wide band gap semiconductor nanoparticles were investigated. The water-soluble amphiphilic host (octacarboxyhemicarcerand) traps the hydrophobic chromophore within its cavity and binds to the surface of metal oxide nanoparticles. Fluorescence quenching and fast charge injection, kforward >/= 7 x 109 s-1, from the S2 state of encapsulated azulene were observed. Charge recombination proceeds at a much lower rate of 2 x 107 s-1. Interestingly, the recombination kinetics is homogeneous, suggesting that electron tunneling through the wall of the "molecular container" is the rate-limiting step of the process.     

聚合物复合物层层组装膜

层层组装是一种基于物质交替沉积而制备复合膜的方法,可以实现膜的结构和组成的精确调控.聚合物复合物是基于各种分子间弱相互作用力而形成的超分子聚集体,其种类包括聚阳离子-聚阴离子复合物、聚电解质-有机小分子复合物、中性聚合物-聚合物复合物以及聚合物-无机杂化复合物等.在本文中,以作者的研究结果为基础,阐明聚合物复合物的层层组装是一种方便、快捷的功能复合膜的构筑方法,具有如下优点:(1)聚合物复合物大的尺度可以实现聚合物复合物层层组装膜的快速构筑;(2)聚合物复合物的结构在组装溶液中和成膜后都容易调控,方便聚合物复合物层层组装膜结构的精细调控.(3)聚合物复合物层层组装膜可以构筑非复合的聚合物层层组装所不能获得的膜结构及功能.     

Outer-sphere contributions to the electronic structure of type zero copper proteins

Bioinorganic canon states that active-site thiolate coordination promotes rapid electron transfer (ET) to and from type 1 copper proteins. In recent work, we have found that copper ET sites in proteins also can be constructed without thiolate ligation (called "type zero" sites). Here we report multifrequency electron paramagnetic resonance (EPR), magnetic circular dichroism (MCD), and nuclear magnetic resonance (NMR) spectroscopic data together with density functional theory (DFT) and spectroscopy-oriented configuration interaction (SORCI) calculations for type zero Pseudomonas aeruginosa azurin variants. Wild-type (type 1) and type zero copper centers experience virtually identical ligand fields. Moreover, O-donor covalency is enhanced in type zero centers relative that in the C112D (type 2) protein. At the same time, N-donor covalency is reduced in a similar fashion to type 1 centers. QM/MM and SORCI calculations show that the electronic structures of type zero and type 2 are intimately linked to the orientation and coordination mode of the carboxylate ligand, which in turn is influenced by outer-sphere hydrogen bonding.     

De novo design, synthesis, and function of semiartificial myoglobin conjugated with coiled-coil two-alpha-helix peptides

The introduction of a flavin chromophore on the myoglobin (Mb) surface and an effective electron-transfer (ET) reaction through the flavin were successfully achieved by utilizing the self-assembly of heterostranded coiled-coil peptides. We have prepared a semiartificial Mb, named Mb-1alphaK, in which an amphiphilic and cationic alpha-helix peptide is conjugated at the heme propionate (Heme-1alphaK). Heme-1alphaK has a covalently bound iron-protoporphyrin IX (heme) at the N terminus of a 1alphaK peptide sequence. This sequence was designed to form a heterostranded coiled-coil in the presence of a counterpart amphiphilic and anionic 1alphaE peptide sequence in a parallel orientation. Two peptides, Fla(1)-1alphaE and Fla(31)-1alphaE, both incorporating a 10-methylisoalloxazine moiety as an artificial flavin molecule, were also prepared (Fla=2-[7-(10-methyl)isoalloxazinyl]-2-oxoethyl). Heme-1alphaK was successfully inserted into apomyoglobin to give Mb-1alphaK. Mb-1alphaK recognized the flavin-modified peptides and a two-alpha-helix structure was formed. In addition, an efficient ET from reduced nicotinamide adenine dinucleotide to the heme center through the flavin unit was observed. The ET rate was faster in the presence of Fla(1)-1alphaE than in the presence of Fla(31)-1alphaE or the equivalent molecule that has no peptide chain. These results demonstrate that the introduction of a functional chromophore on the Mb surface can be achieved by using specific peptide-peptide interactions. Moreover, the dependence of the ET rate on the position of the flavin indicated that the distance between the heme active site and the flavin chromophore was regulated by the three-dimensional structure of the designed polypeptide.     

A true electron-transfer reaction between 5,10,15,20-tetraphenylporphyrinato cadmium(II) and the hexacyanoferrate couple at the nitrobenzene/water interface.

The ability of some metal complexes of 5,10,15,20-tetraphenylporphyrin (TPP) to give a voltammetric wave due to the heterogeneous electron transfer (ET) at a nitrobenzene (NB)/water (W) interface has been examined. The previously-proposed, electron-conductor separating oil-water (ECSOW) system has been successfully employed to find that the TPP complex with cadmium(II) added to NB gives a well-defined, reversible wave for the heterogeneous (i.e., "true") ET with the hexacyanoferrate couple in W. A digital simulation analysis has entirely excluded the possibility of the ion-transfer mechanism due to the homogeneous ET in W. The a.c. impedance method has then been used to determine the kinetic parameters including the standard rate constant k0 (= 0.10 cm M(-1) s(-1)) and the transfer coefficient alpha (= 0.53 at the half-wave potential). These values are in good agreement with those predicted from the Marcus theory with the assumption that the heterogeneous ET due to molecular collision occurs at the "sharp" NB/W interface.     

Ultrafast electron-transfer and solvent adiabaticity effects in viologen charge-transfer complexes

We report ultrafast electron transfer (ET) in charge-transfer complexes that shows solvent relaxation effects consistent with adiabatic crossover models of nonadiabatic ET. The complexes of either dimethyl viologen (MV) or diheptyl viologen (HV) with 4,4'-biphenol (BP) (MVBP or HVBP complexes) have identical charge-transfer spectra and kinetics in ethylene glycol with approximately 900 fs ET decay. We assign this decay time as largely due to adiabatic control of a predicted approximately 40 fs nonadiabatic ET. The MVBP decay in methanol of 470 fs is reduced in mixtures having low (2-20%) concentrations of acetonitrile to as short as 330 fs; these effects are associated with faster relaxation time in methanol and its mixtures. In contrast, HVBP has much longer ET decay in methanol (730 fs) and mixture effects that only reduce its decay to 550 fs. We identify the heptyl substituent as creating major perturbations to solvent relaxation times in the methanol solvation shell of HVBP. These charge-transfer systems have reasonably well-defined geometry with weak electronic coupling where the electronic transitions are not dependent on intramolecular motions. We used a nonadiabatic ET model with several models for adiabatic crossover predictions to discuss the small variation of energy gap with solvent and the ET rates derived from adiabatic solvent control. A time correlation model of solvent relaxation was used to define the solvent relaxation times for this case of approximately zero-barrier ET.     

Time-domain ab initio study of charge relaxation and recombination in dye-sensitized TiO2

In order to investigate the electron dynamics at the alizarin/I2-/TiO2 interface this study uses a novel state-of-the-art quantum-classical approach that combines time-dependent density functional theory with surface hopping in the Kohn-Sham basis. Representing the dye-sensitized semiconductor Gr?tzel cell with the I-/I3- mediator, the system addresses the problems of an organic/inorganic, molecule/bulk interface that are commonly encountered in molecular electronics, photovoltaics, and photoelectrochemistry. The processes studied include the relaxation of the injected electron inside the TiO2 conduction band (CB), the back electron transfer (ET) from TiO2 to alizarin, the ET from the surface to the electrolyte, and the regeneration of the neutral chromophore by ET from the electrolyte to alizarin. Developing a theoretical understanding of these processes is crucial for improving solar cell design and optimizing photovoltaic current and voltage. The simulations carried out for the entire system that contains many electronic states reproduce the experimental time scales and provide detailed insights into the ET dynamics. In particular, they demonstrate the differences between the optimized geometric and electronic structure of the system at 0 K and the experimentally relevant structure at ambient temperature. The relaxation of the injected electron inside the TiO2 CB, which affects the solar cell voltage, is shown to occur on a 100 fs time scale and occurs simultaneously with the electron delocalization into the semiconductor bulk. The transfer of the electron trapped at the surface to the ground state of alizarin proceeds on a 1 ps time scale and is facilitated by vibrational modes localized on alizarin. If the electrolyte mediator is capable of approaching the semiconductor surface, it can form a stable complex and short-circuit the cell by accepting the photoexcited electron on a subpicosecond time scale. The ET from TiO2 to both alizarin and the electrolyte diminishes the solar cell current. Finally, the simulations show that the electrolyte can efficiently regenerate the neutral chromophore. This is true even though the two species do not form a chemical bond and, therefore, the electronic coupling between them is weaker than in the TiO2-chromophore and TiO2-electrolyte donor-acceptor pairs. The chromophore-electrolyte coupling can occur both directly through space and indirectly through bonding to the semiconductor surface. The ET events involving the electrolyte are promoted primarily by the electrolyte vibrational modes.     

Ultrafast processes in bimetallic dyads with extended aromatic bridges. Energy and electron transfer pathways in tetrapyridophenazine-bridged complexes

The energy and electron transfer processes taking place in binuclear polypyridine complexes of ruthenium and osmium based on the tetrapyrido[3,2-a:2',3'-c:3' ',2' '-h:2' "-3' "-j]phenazine bridging ligand (tpphz) have been investigated by ultrafast absorption spectroscopy. In the binuclear complexes, each chromophore is characterized by two spectrally distinguishable metal-to-ligand charge transfer (MLCT) excited states: MLCT1 (with promoted electron mainly localized on the bpy-like portion of tpphz, higher energy) and MLCT0 (with promoted electron mainly localized on the pyrazine-like portion of tpphz, lower energy). In the homodinuclear complexes Ru(II)-Ru(II) and Os(II)-Os(II), MLCT1 --> MLCT0 relaxation (intraligand electron transfer) is observed, with strongly solvent-dependent kinetics (ca. 10(-10) s in CH2Cl2, ca. 10(-12) s in CH3CN). In the heterodinuclear Ru(II)-Os(II) complex, *Ru(II)-Os(II) --> Ru(II)-Os(II) energy transfer takes place by two different sequences of time-resolved processes, depending on the solvent: (a) in CH2Cl2, ruthenium-to-osmium energy transfer at the MLCT1 level followed by MLCT1 --> MLCT0 relaxation in the osmium chromophore, (b) in CH3CN, MLCT1 --> MLCT0 relaxation in the ruthenium chromophore followed by osmium-to-ruthenium metal-to-metal electron transfer. In the mixed-valence Ru(II)-Os(III) species, the *Ru(II)-Os(III) --> Ru(III)-Os(II) electron transfer quenching is found to proceed by two consecutive steps in CH3CN: intraligand electron transfer followed by ligand-to-metal electron transfer. On a longer time scale, charge recombination leads back to the ground state. Altogether, the results show that the tpphz bridge plays an active mechanistic role in these systems, efficiently mediating the transfer processes with its electronic levels.     

A Bio‐inspired Approach for Chromophore Communication: Ligand‐to‐Ligand and Host‐to‐Guest Energy Transfer in Hybrid Crystalline Scaffolds

Efficient multiple‐chromophore coupling in a crystalline metal–organic scaffold was achieved by mimicking a protein system possessing 100 % energy‐transfer (ET) efficiency between a green fluorescent protein variant and cytochrome b₅₆₂. The two approaches developed for ET relied on the construction of coordination assemblies and host–guest coupling. Based on time‐resolved photoluminescence measurements in combination with calculations of the spectral overlap function and Förster radius, we demonstrated that both approaches resulted in a very high ET efficiency. In particular, the observed ligand‐to‐ligand ET efficiency value was the highest reported so far for two distinct ligands in a metal–organic framework. These studies provide important insights for the rational design of crystalline hybrid scaffolds consisting of a large ensemble of chromophore molecules with the capability of directional ET.     

Photoelectrochemistry on Ru(II)-2,2'-bipyridine-phosphonate-derivatized TiO2 with the I3-/I- and quinone/hydroquinone relays. Design of photoelectrochemical synthesis cells

Photocurrent measurements have been made on nanocrystalline TiO2 surfaces derivatized by adsorption of a catalyst precursor, [Ru(tpy)(bpy(PO3H2)2)(OH2)]2+, or chromophore, [Ru(bpy)2 (bpy(PO3H2)2)]2+ (tpy is 2,2':6',2' '-terpyridine, bpy is 2,2'-bipyridine, and bpy(PO3H2)2 is 2,2'-bipyridyl-4,4'-diphosphonic acid), and on surfaces containing both complexes. This is an extension of earlier work on an adsorbed assembly containing both catalyst and chromophore. The experiments were carried out with the I3-/I- or quinone/hydroquinone (Q/H2Q) relays in propylene carbonate, propylene carbonate-water mixtures, and acetonitrile-water mixtures. Electrochemical measurements show that oxidation of surface-bound Ru(III)-OH2(3+) to Ru(IV)=O(2+) is catalyzed by the bpy complex. Addition of aqueous 0.1 M HClO4 greatly decreases photocurrent efficiencies for adsorbed [Ru(tpy)(bpy(PO3H2)2)(OH2)]2+ with the I3-/I- relay, but efficiencies are enhanced for the Q/H2Q relay in both propylene carbonate-HClO4 and acetonitrile-HClO4 mixtures. The dependence of the incident photon-to-current efficiency (IPCE) on added H2Q in 95% propylene carbonate and 5% 0.1 M HClO4 is complex and can be interpreted as changing from rate-limiting diffusion to the film at low H2Q to rate-limiting diffusion within the film at high H2Q. There is no evidence for photoelectrochemical cooperativity on mixed surfaces containing both complexes with the IPCE response reflecting the relative surface compositions of the two complexes. These results provide insight into the possible design of photoelectrochemical synthesis cells for the oxidation of organic substrates.     

Synthesis,crystal structures,characterization and antitumor activities of two copper(II) complexes of a sulfonamide ligand

An N-sulfonamide (HL = N-(5-(4-methoxyph-enyl)-[1, 3, 4]–thiadiazole–2-yl)-naphtalenesulfonamide) and two of its Cu(II) complexes, [Cu(L)₂(py)₂] (C1) and [Cu(L)(phen)₂](L)1.25(MeOH) (C2), were synthesized. The X-ray crystal structures of the complexes have been determined. In complex C1, the copper atom is four-coordinated, forming a CuN₄ chromophore, while in complex C2, the copper atom is five-coordinated, forming a CuN₅ chromophore. The ligand acts as monodentate, coordinating the metal through a single thiadiazole N atom. The molecules from the reaction medium (pyridine and phenanthroline) are also involved in coordination to the copper atoms. The complexes have a square planar (C1) and slightly distorted square pyramidal (C2) geometries. The compounds were characterized by physicochemical and spectroscopic methods. Nuclease activity studies of the complexes confirm their capacity to cleave DNA. Both complexes also have SOD-like activity, but weaker than the native Cu₂Zn₂SOD activity. Cytotoxicity studies were carried out on melanoma cell line B16F10 and on normal retinal epithelial cell line (D407) and confirmed that C2 inhibits the growth of B16F10 cells, in a dose-dependent manner. Also, C2 displays a cytoselective profile, since it is not toxic to the D407 cell line. The results of the cell cytotoxicity studies are in concordance with the DNA cleavage and SOD mimetic activity studies and indicate that complex C2 has a high biological activity.     

Trans-cis isomerization is responsible for the red-shifted fluorescence in variants of the red fluorescent protein eqFP611

An important class of red fluorescent proteins (RFPs) feature a 2-iminomethyl-5-(4-hydroxybenzylidene)imidazolinone chromophore. Among these proteins, eqFP611 has the chromophore in a coplanar trans orientation, whereas the cis isomer is preferred by other RFPs such as DsRed and its variants. In the photoactivatable protein asFP595, the chromophore can even be switched from the nonfluorescent trans to the fluorescent cis state by light. By using X-ray crystallography, we have determined the structure of dimeric eqFP611 at high resolution (up to 1.1 A). In the far-red emitting eqFP611 variant d2RFP630, which carries an additional Asn143Ser mutation, the chromophore resides predominantly (approximately 80%) in the cis isomeric state, and in RFP639, which has Asn143Ser and Ser158Cys mutations, the chromophore is found completely in the cis form. The pronounced red shift of excitation and emission maxima of RFP639 can thus unambiguously be assigned to trans-cis isomerization of the chromophore. Among RFPs, eqFP611 is thus unique because its chromophore is highly fluorescent in both the cis and trans isomeric forms.