Engineering Hierarchical Recognition-Mediated Senolytics for Reliable Regulation of Cellular Senescence and Anti-Atherosclerosis Therapy

Precise regulation of vascular senescence represents a far-reaching strategy to combat age-related diseases. However, the high heterogeneity of senescence, alongside the lack of targeting and potent senolytics, makes it very challenging. Here we report a molecular design to tackle this challenge through multidimensional, hierarchical recognition of three hallmarks commonly shared among senescence, namely, aptamer-mediated recognition of a membrane marker for active cell targeting, a self-immolative linker responsive to lysosomal enzymes for switchable drug release, and a compound against antiapoptotic signaling for clearance. Such senolytic can target and trigger severe cell apoptosis in broad-spectrum senescent endothelial cells, and importantly, distinguish them from the quiescent state. Its potential for in vivo treatment of vascular diseases is successfully illustrated in a model of atherosclerosis, with effective suppression of the plaque progression yet negligible side effects.     

Towards an Understanding of the Carbon-Carbon Bond

In this essay, the classical question of “the influence of the number and kind of substituents on the strength of the C? C bond”, is pursued with the modern tools of contemporary physical organic chemistry. Based on the work of Karl Ziegler, the products and kinetics of thermolysis of a large number of highly branched aliphatic hydrocarbons and phenyl- or cyano-substituted derivatives were investigated. For each class of compounds, a linear relationship was found between the free enthalpy of activation of the homolytic cleavage of the weakest C? C bond and the strain energy in the ground state. These relationships permitted a quantitative separation of steric and electronic effects on the cleavage of C? C bonds. The influence of the size of the substituent groups on bond angles, bond lengths, and the conformational behavior of model compounds was studied by means of experimental structure determinations and force field calculations. C? C bond lengths up to 164 pm, bond angles at tetracoordinate carbon as large as 126°, and unusual eclipsed and gauche preferred conformations were found.     

Perspectives for Biotechnological Production and Utilization of Biopolymers: Metabolic Engineering of Polyhydroxyalkanoate Biosynthesis Pathways as a Successful Example

This article provides an overview of biopolymers, classed according to their chemical structures, function and occurrence, the principles of biosynthesis and metabolism in organisms. It will then focus on polyhydroxyalkanoates (PHA) for which technical applications in several areas are currently considered. PHAs represent a complex class of bacterial polyesters consisting of various hydroxyalkanoic acids that are synthesized by bacteria as storage compounds for energy and carbon if a carbon source is present in excess. Poly(3‐hydroxybutyrate), poly(3HB), is just one example. Most other PHAs are only synthesized if pathways exist which mediate between central intermediates of the metabolism or special precursor substrates on one side and coenzyme A thioesters of hydroxyalkanoic acids, which are the substrates of the PHA synthase catalyzing the polymerization, on the other side. During the last decade, basic and applied research have revealed much knowledge about the biochemical and molecular basis of the enzymatic processes for the synthesis of PHAs in microorganisms. The combination of detailed physiological studies, utilization of the overwhelming information provided by the numerous genome sequencing projects, application of recombinant DNA technology, engineering of metabolic pathways or enzymes and molecular breeding techniques applied to plants have provided new perspectives to produce these technically interesting biopolymers by novel or significantly improved biotechnological processes or by agriculture. Some examples for successful in vivo and in vitro engineering of pathways suitable for the synthesis and biotechnological production of PHAs consisting of medium‐chain‐length 3‐hydroxyalkanoic acids and short‐chain‐length hydroxyalkanoic acids will be provided.     

Understanding the Reactivity of Planar Polycyclic Aromatic Hydrocarbons: Towards the Graphene Limit

The Diels–Alder reactivity of maleic anhydride towards the bay regions of planar polycyclic aromatic hydrocarbons was explored computationally in the DFT framework. The process becomes more and more exothermic and the associated activation barriers become lower and lower when the size of the system increases. This enhanced reactivity follows an exponential behavior that reaches its maximum for systems having 18–20 benzenoid rings in their structures. This peculiar behavior was analyzed in detail by using the activation strain model of reactivity in combination with energy decomposition analysis. The influence of the change in the aromaticity of the polycyclic compound during the process on the respective activation barriers was also studied.     

微藻脂肪合成与代谢调控

随着能源与环境问题的日益严峻,利用微藻生产生物柴油已经成为研究者们关注的焦点。与传统油料作物相比,微藻具有生长速度快、含油量高、不占用耕地等优势,是极具潜力的生物燃料生产原料。虽然许多微藻在压力条件下会在细胞内积累脂肪,特别是中性脂肪三酰甘油(TAG),它是生产生物柴油的主要原料,但目前对于微藻脂肪的合成和代谢调控还了解的很少。为了更好地理解和操纵微藻脂肪代谢以增强脂肪积累,本文综述了微藻脂肪合成与代谢调控的研究进展,包括TAG生物合成途径,提高脂肪积累的生化调控和基因工程策略,阐述了营养控制对脂肪积累的影响,总结了增强脂肪酸合成途径、增强Kennedy途径、调控TAG旁路途经、抑制脂肪合成的竞争途径、抑制脂肪的分解代谢等5种基因工程策略,同时也对微藻脂肪代谢研究的发展进行了展望。     

基于学科理解的认识视角研究——以有机物分子组成与结构主题为例

学科理解对教师教学的主要价值在于凝练学科本原性问题、抽提认识视角、厘清认识思路及建构主题概念层级结构,其中认识视角决定了理解问题的深刻程度,能够指引认识思路的发展,具有学科认识论层面的重要价值。本研究探讨学科理解视域下的认识视角是如何抽提并发展的,以有机物分子组成与结构主题为例。通过理解化学史得出抽提认识视角的过程：(1)追溯化学家本原性思想,分析概念的学科功能;(2)基于学科功能抽提认识视角,纵向体会认识视角的发展性;(3)基于矛盾冲突丰富认识视角,横向体会认识视角的多面性;(4)基于认识视角发展结构化、本原性的理解。     

A Better Understanding of Diethylstilbestrol Electro-oxidation: Towards the Design of an Electrochemical Sensor

The obstacle for the development of a reliable electrochemical technique to trace diethylstilbestrol (DES) lies in the complex electrochemical behavior of this illicit hormone. The present study targeted to thoroughly investigate and understand the electro-oxidation of DES in acetonitrile on gold electrode by cyclic voltammetry (CV) and square wave voltammetry (SWV) techniques. DES voltammogram has shown two anodic peaks, implicating two successive and irreversible processes. Adsorption and diffusion properties were studied and characterized using electrochemical, spectroscopic and morphological techniques. Avoiding adsorption, and under diffusion process only, a good linear correlation between peak current and DES concentration in the range of 0.25 to 1000 μmol/L was obtained with a detection and quantification limits of 0.2 μmol/L and 0.7 μmol/L, respectively, and a sensitivity of 0.016 A/mM. Competitivity tests, between DES and its structural analog hexestrol (HS), were carried out by chronoamperometry and SWV. HS even added in excess was found to merely affect DES electrochemical measurement. The established method exhibited high precision and reproducibility, and allows the easy and successful determination of DES in poultry feed sample. With a deep insight into its complex electrochemical behavior, this work paves the way to the development of selective, sensitive and easy-to-use electrochemical sensors directed towards this synthetic hormone and the related chemicals such as phenolic compounds.     

Receptor-Based Screening Assays: New Perspectives in Anti-Doping Control

The so-called “growth promoters”, steroid hormones and β-agonists, are currently controlled by using hyphenated analytical methods (chromatography coupled to mass spectrometry) or, sometimes for screening purposes, on immunoassays. These methods are often too specific to allow an effective multianalyte control. To develop more efficient assays, the use of hormonal receptors as detection tools (receptor-based binding assays and cell-based assays) is proposed. Receptor-based assays represent useful tools in screening of hormonal residues in food, but they could also be applied in doping control (to detect “new” hormonal substances). Furthermore, these assays could be used to monitor the human exposure to endocrine disruptors.     

Polyamine Colloids Cross-Linked with Phosphate Ions: Towards Understanding the Solution Phase Behavior

Ionically crosslinked poly(allylamine)/phosphate (PAH/Pi) colloids consist of self-assembled nanostructures stabilized by supramolecular interactions. Under physiological conditions, these interactions should be present at high ionic strength and only in a narrow pH window to be effective as drug delivery agents. In this work we study the effect of the pH and ionic strength in the chemical behaviour of inorganic phosphate (Pi), poly(allylamine hydrochloride) (PAH) and their mixture in aqueous solution (PAH−Pi). By combination of experimental measurements and a theoretical model, we demonstrate that the driving force that leads to the formation of colloids is the electrostatic pairing between the positively charged amino groups in PAH and negatively charged HPO₄²⁻ ions. Increasing the ionic strength of the system by addition of KCl weakens the PAH−Pi interactions and narrows the pH stability window from 4 to 1.8 pH units. In addition, a fully reversible system was obtained in which the colloids assemble and disassemble by changing the pH between 6.8 and 7.1 at high ionic strength, making them suitable for use as pH-responsive nanocarriers.     

从能量和信息理论视角理解单取代烷烃的异构化

对直链烷烃和支链烷烃的相对稳定性统一的解释仍然没有定论,并且一直在进行着。以单取代的烷烃体系C_nH_2n+1―R (n = 3, 4, 5, 6;R = OH, OCH₃, NH₂, NO₂, F, Cl, CN, CHO)为例,本文对支链效应的有效性和本质进行了研究。与传统的基于轨道的描述不同的是,本文采用了密度泛函理论的总能量和基于新能量分配方案的能量分量[见Liu, S. B. J. Chem. Phys. 2007, 126, 244103]。新型能量分解方法计算结果表明,静电效应和立体效应等对支链效应的存在都起着重要作用,但是它们均不能单独用来解释支链效应的本质。用双变量(静电势和空间位阻)组合,发现单取代烷烃衍生物的异构化反应主要影响因子是静电势作用,空间位阻效应的影响是次要的。此外还发现了香农熵差与Fisher信息差之间的线性关系,未能发现总能量差或者分能量差值和Fisher信息或者Shannon熵之间的关系。这与前人发现是一致的。     

Engineering Polymer Informatics: Towards the Computer‐Aided Design of Polymers

The computer‐aided design of polymers is one of the holy grails of modern chemical informatics and of significant interest for a number of communities in polymer science. This paper outlines a vision for the in silico design of polymers and presents an information model based on modern semantic web technologies, thus laying the foundations for achieving the vision.

     

Combining Metabolic Engineering and Electrocatalysis: Application to the Production of Polyamides from Sugar

Biorefineries aim to convert biomass into a spectrum of products ranging from biofuels to specialty chemicals. To achieve economically sustainable conversion, it is crucial to streamline the catalytic and downstream processing steps. In this work, a route that combines bio‐ and electrocatalysis to convert glucose into bio‐based unsaturated nylon‐6,6 is reported. An engineered strain of Saccharomyces cerevisiae was used as the initial biocatalyst for the conversion of glucose into muconic acid, with the highest reported muconic acid titer of 559.5 mg L^?1 in yeast. Without any separation, muconic acid was further electrocatalytically hydrogenated to 3‐hexenedioic acid in 94 % yield despite the presence of biogenic impurities. Bio‐based unsaturated nylon‐6,6 (unsaturated polyamide‐6,6) was finally obtained by polymerization of 3‐hexenedioic acid with hexamethylenediamine.     

Cellular and Molecular Engineering of Glycan Sialylation in Heterologous Systems

Glycans have been shown to play a key role in many biological processes, such as signal transduction, immunogenicity, and disease progression. Among the various glycosylation modifications found on cell surfaces and in biomolecules, sialylation is especially important, because sialic acids are typically found at the terminus of glycans and have unique negatively charged moieties associated with cellular and molecular interactions. Sialic acids are also crucial for glycosylated biopharmaceutics, where they promote stability and activity. In this regard, heterogenous sialylation may produce variability in efficacy and limit therapeutic applications. Homogenous sialylation may be achieved through cellular and molecular engineering, both of which have gained traction in recent years. In this paper, we describe the engineering of intracellular glycosylation pathways through targeted disruption and the introduction of carbohydrate active enzyme genes. The focus of this review is on sialic acid-related genes and efforts to achieve homogenous, humanlike sialylation in model hosts. We also discuss the molecular engineering of sialyltransferases and their application in chemoenzymatic sialylation and sialic acid visualization on cell surfaces. The integration of these complementary engineering strategies will be useful for glycoscience to explore the biological significance of sialic acids on cell surfaces as well as the future development of advanced biopharmaceuticals.     

Towards a Quantitative Understanding of Protein Hydration and Volumetric Properties

Herein, we probe by pressure perturbation calorimetry (PPC) the coefficient of thermal expansion, the volumetric and the hydration properties of variants of a hyperstable variant of staphylococcal nuclease (SNase), Δ+PHS. The temperature‐dependent volumetric properties of the folded and unfolded states of the wild‐type protein are calculated with previously published data. The present PPC results are used to interpret the volume diagram and expansivity at a molecular level. We conclude that the expansivity of the unfolded state is, to a first approximation, temperature independent, while that of the folded state decreases with increasing temperature. Our data suggest that at low temperature the defining contribution to ΔV comes mainly from excluded volume differences and ΔV for unfolding is negative. In contrast, at high temperatures, differential solvation due to the increased exposed surface area of the unfolded state and, in particular, its larger thermal volume linked to the increased conformational dynamics of the unfolded state ensemble takes over and ΔV for unfolding eventually becomes positive.     

Towards a Fundamental Understanding of Urea and Thiourea inclusion Compounds

This article reviews some of the fundamental scientific issues associated with solid inclusion compounds, and describes the approaches and strategies that may be used to investigate the structural, dynamic and chemical properties of these systems. Two particular families of solid organic inclusion compounds - the urea and thiourea inclusion compounds - are highlighted. In order to understand the fundamental nature of these solids, it has been necessary to apply a wide range of experimental, computational and theoretical approaches. Each technique provides information on a different aspect of the solid, and the combined information obtained from these complementary approaches allows a comprehensive understanding to be established. Several issues of contemporary interest for urea and thiourea inclusion compounds are described, and the approaches that have been taken towards a fundamental understanding of these systems are explained.     

Antioxidant and Prooxidant Nanozymes: From Cellular Redox Regulation to Next-Generation Therapeutics

Nanozymes, nanomaterials with enzyme-mimicking activity, have attracted tremendous interest in recent years owing to their ability to replace natural enzymes in various biomedical applications, such as biosensing, therapeutics, drug delivery, and bioimaging. In particular, the nanozymes capable of regulating the cellular redox status by mimicking the antioxidant enzymes in mammalian cells are of great therapeutic significance in oxidative-stress-mediated disorders. As the distinction of physiological oxidative stress (oxidative eustress) and pathological oxidative stress (oxidative distress) occurs at a fine borderline, it is a great challenge to design nanozymes that can differentially sense the two extremes in cells, tissues and organs and mediate appropriate redox chemical reactions. In this Review, we summarize the advances in the development of redox-active nanozymes and their biomedical applications. We primarily highlight the therapeutic significance of the antioxidant and prooxidant nanozymes in various disease model systems, such as cancer, neurodegeneration, and cardiovascular diseases. The future perspectives of this emerging area of research and the challenges associated with the biomedical applications of nanozymes are described.     

发展学生认识角度和深度的化学教学转变——以“化学反应原理”模块为例

以"化学反应原理"模块的4课为例,从分析"化学反应原理"的模块功能出发,探讨了发展学生认识角度和深度的教学转变.这些转变包括:(1)转变教学目标取向,从传授具体性知识为本转向建构学科核心观念;(2)转变对学科本体知识的认识,从忽视学科本体知识的内涵到深入挖掘学科本体知识内涵;(3)转变学生观,从笼统关注学生转向对学生已有认识及认识发展点的深度关注;(4)转变教学素材定位,从追求多样化、有新意向匹配教学功能定位、匹配学生认识发展层级、实现教学功能最大化转变;(5)转变对思路外显重要性的认识,从忽视思路外显重要性转变为通过多次外化促进思路外显;(6)转变学案设计方式,从填空式学案转变为过程引导式学案.