Ab initio determination of the ionization potentials of water clusters (H2O)n (n = 2-6)

High-level quantum-chemical ab initio coupled-cluster and multiconfigurational perturbation methods have been used to compute the vertical and adiabatic ionization potentials of several water clusters: dimer, trimer, tetramer, pentamer, hexamer book, hexamer ring, hexamer cage, and hexamer prism. The present results establish reference values at a level not reported before for these systems, calibrating different computational strategies and helping to discard less reliable theoretical and experimental data. The systematic study with the increasing size of the water cluster allows obtaining some clues on the structure and reductive properties of liquid water.     

Oligonucleosides with a Nucleobase‐Including Backbone. Part 11

A linear and a convergent synthesis of uridine‐derived backbone‐base‐dedifferentiated (backbone including) oligonucleotide analogues were compared. The Sonogashira cross‐coupling of the alkyne 1 and the iodide 2 gave the dimer 4 that was C‐desilylated and again coupled with 2 to give the trimer 6 (Scheme 1). Repeating this linear sequence led to the pentamer 10 . Coupling yields were satisfactory up to formation of the trimer 6 , but decreased for the coupling to higher oligomers. Similarly, coupling of the alkynes 5, 7 , and 9 with the iodouridine 3 gave, in decreasing yields, the trimer 12 , tetramer 13 , and pentamer 14 , respectively. The dimeric iodouracil 20 was synthesized by coupling the alkyne 17 with the iodide 16 to the dimer 18 , followed by iodination at C(6/I) to 19 and O‐silylation (Scheme 2). The iodinated dimer 23 was prepared by iodinating and O‐silylating the known dimer 21 . Coupling of 20 and 23 with the dimer 5 , trimer 7 , and tetramer 9 gave the tetramers 8 and 13 , the pentamers 10 and 14 , and the hexamer 15 , respectively (Scheme 3). The oligomers up to the pentamer 14 were deprotected to provide the trimer 24 , tetramer 25 , and pentamer 26 (Scheme 4). There was no evidence for the heteropairing of the pentamer 26 and rA₇ , nor for the pairing of rU₅ and rA₇, while a UV melting experiment showed the beginning of a sigmoid curve for the interaction of rU₇ with rA₇. Therefore, the pentamer 26 does not pair more strongly with rA₇ than rU₅.     

Theoretical studies of the water-cluster anions containing the OH{e}HO structure: energies and harmonic frequencies

In addition to isomers having a dipole-bound electron, the internally bound electron isomers of trimer, tetramer and hexamer water anions are found using an ab initio molecular orbital method. The latter isomers have a characteristic OH{e}HO structure. The interaction between the excess electron {e} and the surrounding OH bonds holds the structure stable. The calculated vibrational infrared spectrum for a hexamer anion with two double proton-acceptor water molecules shows a qualitatively similar vibrational spectrum with the one observed. A strong correlation between the vertical detachment energy and the distribution of the excess electron is also found.     

The molecular structure of cyclic methylsiloxanes

A series of methylcyclosiloxanes from the trimer to the hexamer has been investigated by gas phase electron diffraction. The Si-O bond distance varies between 1.635 and 1.620 Å, the SiOSi angle has values from 132° to 149° within the series. The trimer is substantially planar, the best agreement for the tetramer was obtained with a model of S₄. symmetry. As a consequence of large amplitude vibrations, the larger rings do not possess a well-defined conformation. The results are discussed in relation to previous spectroscopic investigations.     

母体苯胺六聚体的一步法合成及紫外光谱研究

作为聚苯胺模型化合物的齐聚物具有规整的分子结构、良好的电活性以及易加工性能 ,使得齐聚物的研究成为导电高分子研究领域的一个研究热点 .结果表明 ,聚苯胺八聚体对有机气体的敏感性是聚苯胺的 1 0 0 0倍 [1] ,并且导电率与之相似 ,而苯封端苯胺三聚体及四聚体在金属防腐方面也显示了优良的抗腐蚀性 [2 ] .因此 ,合成具有不同链段的聚苯胺齐聚物 (母体苯胺齐聚物以及包括苯基封端 /氨基封端在内的苯胺齐聚物及其衍生物 )就变得十分重要 .合成聚苯胺齐聚物已有许多文献报道 ,如Honzl等 [3]的缩聚法、Monkman[4 ]的取代还原法和 Buchwald…     

Coupled-monomers in molecular assemblies: theory and application to the water tetramer, pentamer, and ring hexamer

We present extensions to the local-monomer (LMon) Model, a general quantum method to describe coupled intramolecular vibrational modes of a molecular cluster consisting of a set of monomers [Y. Wang and J. M. Bowman, J. Chem. Phys. 134, 154510 (2011)], to incorporate monomer-monomer coupling. A central aspect of the LMon model is a local normal-mode analysis, done for each monomer, perturbed by all other mononers. Monomer-monomer coupling is described by several approaches based on these normal-mode analyses. Two are Hückel-type models, where coupling constants for each intramolecular mode are determined non-empirically from normal-mode analyses. One model, the simple one, is limited to nearest-neighbor interactions. The second and more general one determines monomer-monomer couplings from the full and local-monomer Hessians, with no further assumptions. The simple approach is applied to the water tetramer, pentamer and ring hexamer. For the tetramer and ring hexamer cases, artificial degeneracies of the intramolecular energies in the LMon model, owing to the high symmetry of the cluster, are correctly lifted. The general approach to obtain coupling constants is illustrated for the ring hexamer, where new fundamental energies are reported. Other, more rigorous approaches are suggested but not implemented.     

Thermodynamics of forming water clusters at various temperatures and pressures by Gaussian-2, Gaussian-3, complete basis set-QB3, and complete basis set-APNO model chemistries; implications for atmospheric chemistry

The Gaussian-2, Gaussian-3, complete basis set- (CBS-) QB3, and CBS-APNO methods have been used to calculate Delta H degrees and Delta G degrees values for neutral clusters of water, (H(2)O)(n), where n = 2-6. The structures are similar to those determined from experiment and from previous high-level calculations. The thermodynamic calculations by the G2, G3, and CBS-APNO methods compare well against the estimated MP2(CBS) limit. The cyclic pentamer and hexamer structures release the most heat per hydrogen bond formed of any of the clusters. While the cage and prism forms of the hexamer are the lowest energy structures at very low temperatures, as temperature is increased the cyclic structure is favored. The free energies of cluster formation at different temperatures reveal interesting insights, the most striking being that the cyclic trimer, cyclic tetramer, and cyclic pentamer, like the dimer, should be detectable in the lower troposphere. We predict water dimer concentrations of 9 x 10(14) molecules/cm(3), water trimer concentrations of 2.6 x 10(12) molecules/cm(3), tetramer concentrations of approximately 5.8 x 10(11) molecules/cm(3), and pentamer concentrations of approximately 3.5 x 10(10) molecules/cm(3) in saturated air at 298 K. These results have important implications for understanding the gas-phase chemistry of the lower troposphere.     

Synthesis,Structure, and Properties of α,β‐Linked Oligothiazoles with Controlled Sequence

α,β‐Linked oligothiazoles with head‐to‐tail connectivity are presented as a new family of helical scaffolds. Combinations of palladium‐catalyzed cross‐coupling reactions at the 5‐ and 4‐positions of 2‐phenylthiazole led to the synthesis of oligo(2‐phenylthiazoles) with ortho linkages with a variety of defined sequences. The secondary structures of the α,β‐linked oligo(2‐phenylthiazoles) showed a clear dependence on their sequences. X‐ray crystallography of the trimer, tetramer, and hexamer with head‐to‐tail connection revealed the formation of a helical structure, which was stabilized by a combination of intramolecular forces, including interheteroatom (S???N), CH–π, and π–π interactions. The introduction of a chiral end‐group successfully led to the induction of chirality into the helical conformations. Programmable sequences for controlled geometries and photofunctions have been demonstrated through the manifold connection pathways in α,β‐linked oligothiazoles.     

Bowls, balls and sheets of boric acid clusters: the role of pentagon and hexagon motifs

Ab initio calculations suggest the possibility of forming boric acid clusters in the laboratory. The most stable form of the boric acid dimer contains two hydrogen bonds, similar to the carboxylic acid dimers. Though the trimer and the tetramer form extensions of this geometry, the pentamer prefers a bowl shape. Any addition of boric acid molecules to this geometry leads to bowl-shaped structures with the 15-mer forming a (3/4)buckyball and the 20-mer a full-fledged buckyball. The hexamer, on the other hand, prefers to stay planar as a hexagon-centered rosette. Any further extension of this geometry leads to planar structures as long as a pentagon is not included.     

Non-peptidic cell-penetrating agents: synthesis of oligomeric chiral bicyclic guanidinium vectors

Polycationic oligo(chiral bicyclic guanidines) constitute useful non-peptidic penetrating agents for cell uptake and protein surface recognition. We report herein improved and selective procedures for the preparation of oligoguanidinium scaffolds linked through thioether bonds, with similar or different groups and functions at both ends of the chain. Two synthetic strategies were developed to obtain these compounds in relatively good yields from a common thioacetate precursor: generation of a disulfide intermediate or thiolate formation. Thus, tetraguanidinium intermediates 8 and 22 are best synthesized by the disulfide route, whereas hexamer 29, octamer 31, and trimer 37 arise from a combination of both the disulfide and the thioacetate routes. Finally, tetramer 28 can be readily obtained from either strategy.     

A systematic study of the solid state and solution phase conformational preferences of β-peptides derived from transpentacin

The solid state and solution phase conformational preferences of a homologous series of β-peptides derived from (S,S)-2-aminocyclopentanecarboxylic acid (transpentacin) have been investigated using a variety of spectroscopic and crystallographic techniques. These studies indicate that the hexamer and pentamer persist as a 12-helix in both the solid state and solution phase. Although the conformational traits of a 12-helix are exhibited by oligomers with as few as three residues in the solid state, in solution the trimer exists as an equilibrium of many alternative conformers whilst the tetramer has been shown to predominantly exist in either a 12-helix or a turn-type conformation.     

Two-dimensionally extended porphyrin tapes: synthesis and shape-dependent two-photon absorption properties

We report the synthesis and characterization of L- and T-shaped porphyrin tapes as extensible structural motifs of two-dimensionally extended porphyrin tapes. The two-photon absorption (TPA) cross-section values (sigma((2))) for L- and T-shaped porphyrin tapes as well as those for linear trimeric and tetrameric porphyrin tapes were measured by an open-aperture Z-scan method at 2300 nm, a wavelength at which the one-photon absorption contribution is either zero or almost negligible. Under these conditions, the sigma((2)) values for the linear porphyrin tape trimer and tetramer were determined to be 18 500 and 41 200 GM, respectively. The sigma((2)) value for the L-shaped trimer was determined to be 8700 GM, which is only half that of the linear trimer, whereas the sigma((2)) value for the T-shaped tetramer was measured to be 35 700 GM. These results clearly indicate the dependence of the TPA cross-section on the molecular shape, which underscores the importance of directionality in the pi-conjugation pathway for the enhancement of TPA cross- section.     

A novel synthetic method to phenyl-capped penta- and hexaaniline

A new convenient method is reported for the synthesis of the phenyl-capped pentamer and hexamer of aniline. The method was accomplished by the reaction of the parent aniline tetramer in the pernigraniline oxidation state with diphenylamine and N-phenyl-1,4-phenylenediamine in the leucoemeraldine oxidation state, respectively. The mechanism probably involves the formation of cation radicals and their coupling.     

Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril

Amyloid-like fibrils are found in many fatal diseases, such as Alzheimer's disease, type II diabetes mellitus, and the transmissible spongiform encephalopathies, and prion diseases. The kinetics of fibril formation is still debated and becomes a hotspot. In this study, we intend to utilize room temperature simulation to study the stability of the modeling structure for GIFQINS. The results suggest that the hexamer of GIFQINS is highly stable and consistent with the prediction of Eisenberg. Furthermore, high-temperature molecular dynamics simulation in explicit water is used to study its aggregation mechanisms. The important findings from this work are (a) dimer is not thermodynamically stable state, (b) dissolution of the fibrils is more difficult than aggregation, (c) tetramer (2-2) is the intermediate state and (d) two transition states are corresponding to trimer (2-1) and pentamer (3-2). This is the first time to suggest the tetramer (2-2) as intermediate state with kinetics analysis and can shed light on possible mechanisms of aggregation.     

Intermolecular vibrations of the water trimer, a matrix isolation study

Infrared spectra from 25 to 4000 cm(-1) have been recorded of water (H2O, D2O and H218O) matrix isolated in neon, argon, and krypton matrices. Intermolecular absorption bands of different isotopologues of the water trimer and tetramer have been assigned from concentration dependencies and diffusion behavior, using the well-known mid-infrared trimer and tetramer absorption bands as measures of the trimer and tetramer concentrations. The results are compared to ab initio calculations.     

Ce（SO4）2-mediated Oxidative Coupling of Primary Aromatic Amines in Water

The oxidative coupling of primary aromatic amines was investigated. Ce(SO4)2 can mediate the oxidative coupling of primary aromatic amines in water to dimers, trimers and/or tetramers, which depended on the substituents of primary aromatic amines. When 2,6-dimethylaniline or 2,6-diethylaniline was used as substrate, dimer, and tetramer were formed as major products. When 2,6-diisopropylaniline or 2,6-dihaloanilines was used as substrate, dimer, and trimer were formed. The mechanistic aspect was also investi...     

DFT study on cooperativity in the interactions of hydrazoic acid clusters

Density functional theory at the B3LYP level with the 6‐311G** basis set is performed to calculate the systems consisting of up to four hydrazoic acid molecules. The dimers are found to exhibit cyclic and chain structures with N … H contacts at ca. 2.1–2.7 Å. However, there are only cyclic structures with N … H contacts at ca. 2.0–2.3 Å and 2.0–2.1 Å in the trimer and tetramer, respectively. Hydrogen bond distances in the trimer and tetramer are shorter than those in the cyclic dimer as a result of the stronger interaction between molecules. The contribution of cooperative effect to the interaction energy is significant. After the correction of the basis set superposition error and zero‐point energy, the binding energies are ?10.69, ?29.34, and ?54.26 kJ·mol^?1 for the most stable dimer, trimer, and tetramer, respectively. The calculated IR shifts for N? H stretching mode increase with the size of the cluster growths, reaching more than 200 cm^?1 in the tetramer. For the most stable clusters, the transition from the monomer to dimer, dimer to trimer, and trimer to tetramer involve changes of ?14.40, ?25.68, and ?31.88 kJ·mol^?1 for the enthalpies at 298.15 K and 1atm, respectively. We also perform Mulliken populations analysis and find the Mulliken populations on intermolecular N … H increasing in the sequence of the dimer, trimer, and tetramer. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 279–286, 2003     

Efficient sequential segment coupling using N-alkylcysteine-assisted thioesterification for glycopeptide dendrimer synthesis

A highly pure MUC1-derived glycopeptide dendrimer of 22 kDa was prepared by a sequential segment coupling, achieved by an N-alkylcysteine (NAC)-assisted thioesterification. The glycopeptide having C-terminal NAC was prepared by the Fmoc method and converted to the thioester by 3-mercaptopropionic acid treatment. The thioester was condensed with a lysine trimer carrying NAC to afford tetramer, which was then converted to the thioester. Two tetramers were condensed with ethylenediamine to give the octameric glycopeptide dendrimer.     

Hydrogen-bonded OH stretching modes of methanol clusters: a combined IR and Raman isotopomer study

A comprehensive study of the OH and OD stretching fundamentals in clusters of methanol and its isotopomers CH(3)OD, CD(3)OH, and CD(3)OD provides detailed insights into the hydrogen-bond mediated coupling as a function of cluster size. The combination of infrared and Raman supersonic jet spectroscopy enables the observation and assignment of all hydrogen-bonded OH stretching modes of isolated methanol trimer and methanol tetramer. A consistent explanation for the spectral complexity observed more than a decade ago in methanol trimer in terms of low-frequency methyl umbrella motions is provided. Previous explanations based on cluster isomerism or anharmonic resonances are ruled out by dedicated jet experiments. The first experimental lower bound for concerted quadruple proton transfer in S(4) symmetric methanol tetramer is derived and compared with theoretical predictions. The observed isotope effects offer insights into the anharmonicity of the localized OH bond. The performance of harmonic B3LYP and MP2 calculations in predicting hydrogen-bond-induced spectral shifts and couplings is investigated.     

Thermal oligomerisation of aryl isocyanides: formation of pyrazino[1,2-a:4,5-a']diindoles and indigo diarylimines

The aryl isocyanides 1-4 are converted at 150 degrees C into the hexameric pyrazino[1,2-a:4,5-a']diindoles 15-19. 4-Fluorophenyl isocyanide, when heated at 135 degrees C, gave the hexamer 19 and the tetrameric indigo di-arylimine 9, and when kept at ambient temperature gave mainly the tetramer 9 in low yield. The structures of the hexamer 19 and the tetramer 9 were established by X-ray crystallography. Mechanisms are proposed for the oligomerisation reactions.