Hydrogen migrations in mass spectrometry. VI—the chemical ionization mass spectra of substituted benzoic acids and benzyl alcohols

The H₂ and CH₄ chemical ionization mass spectra of a series of series of substituted benzoic acids and substituted benzyl alcohols have been determined. For the benzoic acids the major fragmentation reactions of the protonated molecule involve elimination of H₂O or elimination of CO₂, the latter reaction involving migration of the carboxylic hydrogen to the aromatic ring. For the benzyl alcohols the major fragmentation reactions of [MH]⁺ involve loss of H₂O or CH₂O, analogous to the CO₂ elimination reaction for the benzoic acids. It is shown that the CO₂ and CH₂O elimination reactions occur only when a conjugated aromatic ring system is present, and that for the carboxylic acid systems, methyl groups and, to a lesser extent, phenyl groups are capable of migrating. The only discernible effect of substituents on the fragmentation of [MH]⁺ is an enhancement of the H₂O loss reaction in the benzoic acid system when an amino, hydroxyl, or halogen substituent is ortho to the carboxyl function. This ‘ortho’ effect, which differs in scope from that observed in electron impact mass spectra, is attributed to an intramolecular catalysis by the ortho substituent of the 1,3 hydrogen migration in the carbonyl protonated acid followed by H₂O elimination. Apparently, this route is favoured over the direct elimination of H₂O from the carbonyl protonated acid, since the latter has a high activation energy barrier because of unfavourable orbital symmetry restrictions.     

Formation of y + 10 and y + 11 Ions in the Collision-Induced Dissociation of Peptide Ions

Tandem mass spectra of peptide ions, acquired in shotgun proteomic studies of selected proteins, tissues, and organisms, commonly include prominent peaks that cannot be assigned to the known fragmentation product ions (y, b, a, neutral losses). In many cases these persist even when creating consensus spectra for inclusion in spectral libraries, where it is important to determine whether these peaks represent new fragmentation paths or arise from impurities. Using spectra from libraries and synthesized peptides, we investigate a class of fragment ions corresponding to y_n-1 + 10 and y_n-1 + 11, where n is the number of amino acid residues in the peptide. These 10 and 11 Da differences in mass of the y ion were ascribed before to the masses of [+ CO – H₂O] and [+ CO – NH₃], respectively. The mechanism is suggested to involve dissociation of the N-terminal residue at the CH-CO bond following loss of H₂O or NH₃. MS³ spectra of these ions show that the location of the additional 10 or 11 Da is at the N-terminal residue. The y_n-1 + 10 ion is most often found in peptides with N-terminal proline, asparagine, and histidine, and also with serine and threonine in the adjacent position. The y_n-1 + 11 ion is observed predominantly with histidine and asparagine at the N-terminus, but also occurs with asparagine in positions two through four. The intensities of the y_n-1 + 10 ions decrease with increasing peptide length. These data for y_n-1 + 10 and y_n-1 + 11 ion formation may be used to improve peptide identification from tandem mass spectra.     

Identification of Epoxide Functionalities in Protonated Monofunctional Analytes by Using Ion/Molecule Reactions and Collision-Activated Dissociation in Different Ion Trap Tandem Mass Spectrometers

A mass spectrometric method has been delineated for the identification of the epoxide functionalities in unknown monofunctional analytes. This method utilizes gas-phase ion/molecule reactions of protonated analytes with neutral trimethyl borate (TMB) followed by collision-activated dissociation (CAD) in an ion trapping mass spectrometer (tested for a Fourier-transform ion cyclotron resonance and a linear quadrupole ion trap). The ion/molecule reaction involves proton transfer from the protonated analyte to TMB, followed by addition of the analyte to TMB and elimination of methanol. Based on literature, this reaction allows the general identification of oxygen-containing analytes. Vinyl and phenyl epoxides can be differentiated from other oxygen-containing analytes, including other epoxides, based on the loss of a second methanol molecule upon CAD of the addition/methanol elimination product. The only other analytes found to undergo this elimination are some amides but they also lose O = B-R (R = group bound to carbonyl), which allows their identification. On the other hand, other epoxides can be differentiated from vinyl and phenyl epoxides and from other monofunctional analytes based on the loss of (CH₃O)₂BOH or formation of protonated (CH₃O)₂BOH upon CAD of the addition/methanol elimination product. For propylene oxide and 2,3-dimethyloxirane, the (CH₃O)₂BOH fragment is more basic than the hydrocarbon fragment, and the diagnostic ion (CH₃O)₂BOH₂⁺ is formed. These reactions involve opening of the epoxide ring. The only other analytes found to undergo (CH₃O)₂BOH elimination are carboxylic acids, but they can be differentiated from the rest based on several published ion/molecule reaction methods. Similar results were obtained in the Fourier-transform ion cyclotron resonance and linear quadrupole ion trap mass spectrometer.     

Small-angle neutron-scattering study of bis(quaternaryammonium bromide) surfactant micelles in water. Effect of the long spacer chain on micellar structure

The microstructure of the normal micelles formed by dimeric surfactants with long spacers, [Br⁻(CH₃)₂N⁺(C _m H_{2 m +1})-(CH₂) _S  -(C _m H_{2 m +1})N⁺(CH₃)₂Br⁻, m = 10 and s = 8, 10 and 12], has been investigated by small-angle neutron scattering and compared with previously reported results for micelles of the same dimeric surfactants with shorter spacers (m = 10 and s = 2, 3, 4 and 6). It was found that for dimeric surfactants with long spacers (s = 8 and 10), both micellar growth and variation in shape occur to only a small extent, if at all, compared with dimeric surfactants with short spacers. However, for the dimeric surfactant with the longest spacer, s = 12, the extent of micellar growth and shape variation is also large. These results are due to the differences in conformation of dimeric surfactants with short spacers (s = 2–6) compared with that of the surfactants with long spacers (s = 8–12). Received: 15 June 1998 Accepted: 22 July 1998     

Hydrogen bond CH…O in a methanolic solution of hydrogen chloride

The existence of a hydrogen bond in which a methyl group of the (MeOH)₂H⁺ ion acts as a proton donor is examined. The fundamental vibration frequencies of this ion were calculated for different numbers and strengths of CH…O bonds. The atomic charges in neutral ((MeOH) _n ,n=1–4) and protonated ((MeOH) _m H⁺,m=2–6) associates of methanol molecules were also calculated. The experimentally observed decrease in the v(CH) vibration frequencies of the (MeOH)₂H⁺ ion to 2890 cm⁻¹ and 2760 cm⁻¹ is attributable to the fact that each methyl group of the ion is involved in formation of two CH…O bonds with strength of −12.5 kJ mol⁻¹. The proton-donating ability of the CH bond depends on the charge on its H atom; however, it does not correlate with the dipole moment of this bond. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 306–312, February, 1999.     

Raman scattering spectra and molecular conformations of bis(quaternaryammonium bromide)-water systems

The dimeric bis(quaternaryammonium bromide) surfactants, [Br⁻(CH₃)₂N⁺(C _m H_{2 m +1})—(CH₂) _s —(C _m H_{2 m +1})N⁺(CH₃)₂Br⁻, s = 2, 3 and m = 4, 6, 10 and 12, s = 6 and m = 8, 10, 12], have been synthesized and the phase maps of the sm6-8-water, sm6-10-water and sm6-12-water binary systems have been determined (sm6-8 implies s = 6, m = 8). In order to examine the molecular structures of these solid samples and of their dimeric surfactant-water binary systems, Raman spectra of the simple dimeric surfactants, sm2-4 and sm3-4, in which crystal structures of the trans- and cis-type conformations have been determined by single-crystal X-ray diffraction analysis, have been investigated, and Raman bands characteristic of these skeletal structures were found in the skeletal deformation region. On the basis of these characteristic Raman bands for the two conformations, it has been concluded that the dimeric surfactants, sm6-8, sm6-10 and sm6-12 also take up a cis-type conformation in the crystalline state. Furthermore, it has been found that the Raman bands in the C—H stretching, skeletal stretching and CH₂ scissoring regions are sensitive to phase structure. Received: 21 July 1998 Accepted in revised form: 9 November 1998     

Structure and fragmentation of [C6H13O]+ ions formed by chemical ionization

The structure and fragmentation of eight [C₆H₁₃O] ⁺ ions formed by protonation of C₆H₁₂O carbonyl compounds in the gas phase have been investigated using isotopic labeling and metastable ion studies to investigate the fragmentation reactions and collisional dissociation studies to probe ion structures. Protonated 3-methyl-2-pentanone and protonated 2-methyl-3-pentanone readily-interconvert by pinacolic-retro-pinacolic rearrangements; the remaining six ions represent stable ion structures, although in many cases fragmentation is preceded by pinacolic-type rearrangements. Unimolecular (metastable ion) fragmentation of the [C₆H₁₃O] ⁺ species occurs by elimination of H₂O, C₃H₆, C₄H₈ and C₂H₄O. The last three elimination reactions appear to occur through the intermediacy of a proton-bound complex of a carbonyl compound and an olefin, with the proton residing with the species of higher proton affinity on decomposition of the complex.     

Ethene elimination from CH3CH2NH=CH 2 + : Reaction pathways at the boundary between stepwise and concerted processes

The elimination of ethene from CH₃CH₂NH=CH ₂ ⁺ is characterized by ab initio procedures. This reaction occurs through several asynchronous stages, but without passing through formal intermediates. A potential energy barrier to hydrogen migration from the β carbon to N is largely determined by the energy required to cleave the CN bond, but is lowered slightly by H transfer from the β to the α carbon and then to N. The complex [C₂H ₅ ⁺ NH=CH₂] is bypassed, even though that complex could exist at energies only slightly above that of the transition state for ethene elimination. Furthermore, conversion of a substantial reverse activation energy into energy of motion causes CH₂=NH ₂ ⁺ and CH₂=CH₂ to dissociate faster than they can form [CH₂=NH ₂ ⁺ CH₂=CH₂]. Comparison of results for CH₃CH₂NH=CH ₂ ⁺ to ab initio ones for methane from CH₃CH₂CH ₃ ⁺ and elimination of ethene from CH₃CH₂O=CH ₂ ⁺ and CH₃CH₂CH=OH⁺ reveals that these dissociations occur in a similar but, in each case, a distinct series of asynchronous steps or stages, and that there is no sharp demarcation between concerted and stepwise eliminations as presently defined. In dissociations of CH₃CH₂NH=CH ₂ ⁺ , loss of electron density at the C in the breaking N bond leads the transfer of electron density to that carbon by migration of a hydrogen from the adjacent C. We attribute this to a requirement for the moving H to be close to Cα before the moving H can start to develop covalent bonding to Cα. It is also concluded that elimination of ethene from CH₃CH₂NH=CH ₂ ⁺ avoids a Woodward-Hoffmann symmetry-imposed barrier by H migrating sufficiently from the β to the α carbon on the way to N, so that the dissociation is essentially a 1,1 rather than a 1,2 elimination.     

Thermal characterization of new complexes of Zn(II) and Cd(II) with some bipyridine isomers and propionates

New mixed ligand complexes of the following stoichiometric formulae: M(2-bpy)₂(RCOO)₂·nH₂O, M(4-bpy)(RCOO)₂·H₂O and M(2,4’-bpy)₂(RCOO)₂·H₂O (where M(II)=Zn, Cd; 2-bpy=2,2’-bipyridine, 4-bpy=4,4′-bipyridine, 2,4′-bpy=2,4′-bipyridine; R=C₂H₅; n=2 or 4) were prepared in pure solid-state. These complexes were characterized by chemical and elemental analysis, IR and conductivity studies. Thermal behaviour of compounds was studied by means of DTA, DTG, TG techniques under static conditions in air. The final products of pyrolysis of Cd(II) and Zn(II) compounds were metal oxides MO. A coupled TG/MS system was used to analyse of principal volatile products of thermal decomposition or fragmentation of Zn(4-bpy)(RCOO)2·H2O under dynamic air and argon atmosphere. The principal species correspond to: C⁺, CH⁺, CH₃ ⁺, C₂H₂ ⁺, HCN⁺, C₂H₅ ⁺ or CHO⁺, CH₂O⁺ or NO⁺, CO₂ ⁺, ¹³C¹⁶O₂ ⁺ and ¹²C¹⁶O¹⁸O⁺ and others; additionally CO⁺ in argon atmosphere.     

Why Are B ions stable species in peptide spectra?

Protonated amino acids and derivatives RCH(NH₂)C(+O)X · H⁺ (X = OH, NH₂, OCH₃) do not form stable acylium ions on loss of HX, but rather the acylium ion eliminates CO to form the immonium ion RCH = NH ₂ ⁺ . By contrast, protonated dipeptide derivatives H₂NCH(R)C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B₂ ions by elimination of HX. These B₂ ions fragment on the metastable ion time scale by elimination of CO with substantial kinetic energy release (T _1/2 = 0.3–0.5 eV). Similarly, protonated N-acetyl amino acid derivatives CH₃C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B ions by loss of HX. These B ions also fragment unimolecularly by loss of CO with T _1/2 values of ～ 0.5 eV. These large kinetic energy releases indicate that a stable configuration of the B ions fragments by way of activation to a reacting configuration that is higher in energy than the products, and some of the fragmentation exothermicity of the final step is partitioned into kinetic energy of the separating fragments. We conclude that the stable configuration is a protonated oxazolone, which is formed by interaction of the developing charge (as HX is lost) with the N-terminus carbonyl group and that the reacting configuration is the acyclic acylium ion. This conclusion is supported by the similar fragmentation behavior of protonated 2-phenyl-5-oxazolone and the B ion derived by loss of H-Gly-OH from protonated C₆H₅C(+O)-Gly-Gly-OH. In addition, ab initio calculations on the simplest B ion, nominally HC(+O)NHCH₂CO⁺, show that the lowest energy structure is the protonated oxazolone. The acyclic acylium isomer is 1.49 eV higher in energy than the protonated oxazolone and 0.88 eV higher in energy than the fragmentation products, HC(+O)N⁺H = CH₂ + CO, which is consistent with the kinetic energy releases measured.     

Fragmentation of acylium ions from methyl levulinate. Isomerization processes involving carbon and oxygen atoms of both carbonyl groups

The fragmentations of the acylium ions O?C⁺? CH₂? CH₂? CO₂CH₃ and O?C⁺? CH₂? CH₂? COCH₃ generated from methyl levulinate are governed extensively by the interaction of the two carbonyl groups. Both species eliminate a molecule of CO unimolecularly and under CID conditions. The results derived from measurements of ¹³C and ¹⁸O labelled precursors, together with kinetic energy release values, have been used to study the mechanisms. In the first of these acylium ions, both carbonyl groups are equivalent; this phenomenon can be the result of a 1,4 methoxy shift. In the second acylium ion, only the oxygen atoms change their positions; this isomerization occurs via the [M? H]⁺ of γ-valerolactone. Some other fragmentation processes also discussed in relation to ²H labelling are the formation of the [M ? COOCH₃] ⁺ ion and the loss of HCOOCH₃ in the collision-induced dissociation mass spectra of the first acylium ion, and the formation of the [CH₃CO]⁺ ion and the loss of H₂O for the second one.     

Small-angle neutron-scattering study and micellar model of the gemini (phenylenedimethylene)bis(n-octylammonium)dibromide surfactant micelles in water

The microstructure of the micelles formed in aqueous solution by gemini surfactants with aromatic spacers, [Br(CH₃)₂N⁺(C _m H_{2 m +1})-(Ph)-(C _m H_{2 m +1})N⁺(CH₃)₂Br, m=8 and Ph = o-, m- or p-phenylenedimethylene] has been examined by small-angle neutron scattering. Aggregation of the gemini surfactants with an o-phenylenedimethylene spacer brings about formation of premicelles and small micelles at concentrations below the second critical micelle concentration, while above this concentration marked micellar growth and variation in shape occurs. It is suggested that the minimum aggregate formed at this critical micelle concentration may be the trimer or tetramer and that this result supports the mechanism of “gemini → submicelle → assembly” for micellar growth. Received: 8 September 1998 Accepted in revised form: 27 November 1998     

Preparation, Thermal Behaviour, and Crystal Structure of MgAl2F8(H2O)2

 Single crystals of MgAl₂F₈(H₂O)₂ have been obtained under hydrothermal conditions (250°C, 14 d) from a starting mixture of AlF₃ and MgAlF₅(H₂O)₂ in a 5% (w/w) HF solution. The crystal structure has been determined and refined from single crystal data (Fmmm (#69), Z = 4, a = 7.2691(7), b = 7.0954(16), c = 12.452(2) ?, 281 structure factors, 27 parameters, R(F ² > 2σ (F ²)) = 0.0282, wR(F ² all) = 0.0885). The obtained crystals were systematically twinned according to (010/100/001) as twinning matrix, reflecting the pseudo-tetragonal metric. The crystal structure is composed of perowskite-type layers built of corner sharing AlF₆ octahedra with an overall composition of AlF₄ ⁻ which are connected via common fluorine atoms of [MgF_4/2(H₂O)_2/1] octahedra. Group-subgroup relations of MgAl₂F₈(H₂O)₂ to WO₃(H₂O)_0.33 and to other M(II)M(III)₂ F₈(H₂O)₂ structures are briefly discussed. Above 570°C, MgAl₂F₈(H₂O)₂ decomposes under elimination of water into α-AlF₃, β-AlF₃, and MgF₂.     

Solubility and Ionic Processes in the Cu X 2? MX ?H2O ( X ?=Cl?, Br?; M +=Li+, Na+, K+, NH4+, Cs+) Systems

 Solubility isotherms in the CuBr₂−MBr−H₂O (M ⁺ = Li⁺, Na⁺, Cs⁺) systems at 298.15 K were measured. The results together with other available literature data for copper chloride and bromide systems were treated by hydration analysis, and comparative discussion of ionic processes taking place in the respective saturated solutions was performed.     

Two Novel Er-Cr Ion-Pair Complexeswith Hydrogen Bonding Network: Syntheses, Crystal Structures, and Magnetic Properties

Summary.  Two novel Er-Cr ion-pair complexes ([Er(DMA)₃(H₂O)₄][Cr(CN)₆] and [Er(MPL)₄(H₂O)₃][Cr(CN)₆]·2H₂O; DMA = dimethylacetamide, MPL = 1-methyl-2-pyrrolidinone) have been synthesized. [Er(DMA)₃(H₂O)₄][Cr(CN)₆] crystallizes in the monoclinic system (space group P _c ) with a = 9.789(2), b = 11.263(2), c = 13.997(3)?, β = 105.66(3)°, V = 1485.9(5)?³, Z = 2; [Er(MPL)₄(H₂O)₃][Cr(CN)₆]·2H₂O crystallizes in the monoclinic system (space group P2₁) with a = 9.447(2), b = 13.881(3), c = 14.673(3)?, β = 101.85(3), V = 1883.1(7)?³, Z = 2. X-Ray crystal diffraction analyses reveal that the two complexes form a hydrogen bonding network structure through the CN group and H₂O molecules. Variable temperature susceptibilities for the two complexes indicate that weak antiferromagnetic interactions exist between cation and anion pairs through this hydrogen bonding network.     

Fragmentations of Hydroxymethyl Radical Cation: An Ab Initio Study

The probable fragmentation channels of hydroxymethyl radical cation were studied through the H‐and H₂‐abstraction and C‐O bond breaking reactions including their related isomerization reactions. The energy barriers for hydroxymethyl cation undergoing isomerization reactions are generally higher than those undergoing the concerted 1,2‐elimination reactions to generate CHO⁺ and H₂. The fragmentation reaction to form CHO⁺ and H₂ through the 1,2‐elimination pathways is the major fragmentation channel for hydroxymethyl cation, consistent with the experimental observation. H abstraction from the hydroxyl group of CH₂OH⁺ is more difficult than that from the methylene group. The feasible path to lose H is to generate CHOH₂⁺ through hydrogen transfer reaction as the first step and then to undergo H‐elimination to generate trans‐CHOH⁺. Among all the reactions found in this study, the OH‐elimination to generate CH₂⁺ has the highest energy barrier. Our calculation results indicate that the major signals contributed from the related species of hydroxymethyl cation found in the mass spectrum should be m/e 29, m/e 30.     

Preparation,Thermal Behaviour,and Crystal Structure of MgAl<Subscript>2</Subscript>F<Subscript>8</Subscript>(H<Subscript>2</Subscript>O)<Subscript>2</Subscript>

Summary.  Single crystals of MgAl₂F₈(H₂O)₂ have been obtained under hydrothermal conditions (250°C, 14 d) from a starting mixture of AlF₃ and MgAlF₅(H₂O)₂ in a 5% (w/w) HF solution. The crystal structure has been determined and refined from single crystal data (Fmmm (#69), Z = 4, a = 7.2691(7), b = 7.0954(16), c = 12.452(2) ?, 281 structure factors, 27 parameters, R(F ² > 2σ (F ²)) = 0.0282, wR(F ² all) = 0.0885). The obtained crystals were systematically twinned according to (010/100/001) as twinning matrix, reflecting the pseudo-tetragonal metric. The crystal structure is composed of perowskite-type layers built of corner sharing AlF₆ octahedra with an overall composition of AlF₄ ⁻ which are connected via common fluorine atoms of [MgF_4/2(H₂O)_2/1] octahedra. Group-subgroup relations of MgAl₂F₈(H₂O)₂ to WO₃(H₂O)_0.33 and to other M(II)M(III)₂ F₈(H₂O)₂ structures are briefly discussed. Above 570°C, MgAl₂F₈(H₂O)₂ decomposes under elimination of water into α-AlF₃, β-AlF₃, and MgF₂. Received October 29, 2001. Accepted (revised) December 6, 2001     

Study of Cluster Anions Generated by Laser Ablation of Titanium Oxides: A High Resolution Approach Based on Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Laser ablation of titanium oxides at 355 nm and ion–molecule reactions between [(TiO₂)_x]^–• cluster anions and H₂O or O₂ were investigated by Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) with an external ion source. The detected anions correspond to [(TiO₂)_x(H₂O)_yOH]^– and [(TiO₂)_x(H₂O)_yO₂]^–• oxy-hydroxide species with x = 1 to 25 and y = 1, 2, or 3 and were formed by a two step process: (1) laser ablation, which leads to the formation of [(TiO₂)_x]^–• cluster anions as was previously reported, and (2) ion–molecule reactions during ion storage. Reactions of some [(TiO₂)_x]^–• cluster anions with water and dioxygen conducted in the FTICR cell confirm this assessment. Tandem mass spectrometry experiments were also performed in sustained off-resonance irradiation collision-induced dissociation (SORI-CID) mode. Three fragmentation pathways were observed: (1) elimination of water molecules, (2) O₂ loss for radical anions, and (3) fission of the cluster. Density functional theory (DFT) calculations were performed to explain the experimental data.     

Studies in chemical ionization mass spectrometry:Steroidal ketones

The CH₄ chemical ionization (CI) spectra of several keto-steroids are reported as well as the H₂ and C₃H₈CI spectra of a few keto-steroids. [M + H ? H₂O]⁺ is an abundant ion in the CH₄CI spectrum of 5α-androstane-17-one and the water loss from the [M + H]⁺ ions does not involve the hydrogens on C-18 and only involves the C-16 hydrogens to about 10%. The major loss process has not been determined.3-Keto and 17-Keto steroids are readily distinguished by their CH₄CI spectra. The effectiveness of substituents for directing attack by [CH₅]⁺ and [C₂H₅]⁺ can be estimated:carboxyl > methoxy ? carbonyl > bromo ? chloro > hydroxy. Significant differences are observed in the H₂CI spectra of two 5α-vs. 5β-steroids. Propane CI Spectra are similar to methane CI spectra, but show generally less fragmentation.     

Solubility and Ionic Processes in the Cu X 2? MX ?H2O ( X ?=Cl?, Br?; M +=Li+, Na+, K+, NH4+, Cs+) Systems

Summary.  Solubility isotherms in the CuBr₂−MBr−H₂O (M ⁺ = Li⁺, Na⁺, Cs⁺) systems at 298.15 K were measured. The results together with other available literature data for copper chloride and bromide systems were treated by hydration analysis, and comparative discussion of ionic processes taking place in the respective saturated solutions was performed. Corresponding author. E-mail: jitka@prfdec.natur.cuni.cz Received August 6, 2002; accepted (revised) November 29, 2002 Published online April 3, 2003