On the X-ray and UV photoelectron spectra of the difluorobenzenes

Ab initio calculations with a double zeta contracted gaussian basis are used to discuss the ionization potentials of o-, m- and p-difluorobenzene, and the correlation with benzene. Interpretations of the experimental X-ray and UV photoelectron spectra are given.     

X-ray and UV photoemission studies of valence electronic structure of NiO

The X-ray and UV photoemission valence band spectra of NiO are interpreted using the molecular orbital theory for the NiO^10?₆ cluster and the sudden approximation (monopole selection rules). They exhibit the effects of crystal field splitting, multiplet splitting, electron shake-up (O 2pe^b_g→ Ni 3de^a_g). relaxation and Ni 3dO 2p hybridization. Shake-up satellite data indicate that the NiO optical absorption edge near 4 eV is associated with an O 2p → Ni 3d transition. The NiO valence electronic structure obtained in this work is compared with band structure models of Wilson and Mattheiss.     

NMR and UV studies of 4-thio-2'-deoxyuridine and its derivatives

5-Substituted-4-thio-2'-deoxyuridine nucleosides have been chemically synthesized and studied by NMR and UV spectroscopy. The results have been analyzed and discussed in connection with the previous data. The imino proton signal and the carbon signal of the thiocarbonyl group in the 5-substituted-4-thio-2'-deoxyuridines were found to be at much lower field, offering a potential for monitoring these modified bases at the DNA level. All 4-thionucleosides have strong absorptions at around 340 nm and consequently would be useful as potential UVA-induced anticancer agents.     

Carotenoid radical anions and their protonated derivatives

In this study, we report the protonation reactions for astaxanthin and canthaxanthin radical anions in methanol, alkaline methanol, and aqueous 2% Triton X-100 at different pH values. The pKa values for the corresponding alpha-hydroxy radical derivatives of astaxanthin, canthaxanthin, and beta-apo-8'-carotenal were estimated in 2% Triton X-100. Also, the effects of the microenvironment and the structure of the carotenoids on the protonation rate constant are discussed.     

Zinc halide complexes of imidazolidine-2-thione and its derivatives: X-ray structures,solid state,solution NMR and antimicrobial activity studies

The preparation and characterization of zinc complexes of formula ZnL₂X₂ (X?=?Cl and Br), with L?=?1,3-diazinane-2-thione (Diaz), 1,3-diazipane-2-thione (Diap), imidazolidine-2-thione (Imt) and its methyl and n-propyl substituted derivatives, are described. The complexes dichlorobis(1-methylimidazolidine-2-thione-S)-zinc(II) (1) and dichlorobis(1-propylimidazolidine-2-thione-S)-zinc(II) (2) have been characterized by single-crystal X-ray methods. Both complexes adopt distorted tetrahedral geometry. Only intramolecular hydrogen bonding interactions are observed in 1 and 2. Solution and solid state ¹³C NMR show a significant shift of the C=S carbon resonance of the ligands, while other resonances are relatively unaffected, indicating that most likely the solid state structure is maintained in solution. Antimicrobial activity studies of the free ligands and their complexes show that ligands exhibit substantial antibacterial activities compared to the complexes.     

Anion binding in the C3v-symmetric cavity of a protonated tripodal amine receptor: potentiometric and single crystal X-ray studies

Tris(2-aminoethyl)amine (tren) based pentafluorophenyl-substituted tripodal L, tris[[(2,3,4,5,6-pentafluorobenzyl)amino]ethyl]amine receptor is synthesized in good yield and characterized by single crystal X-ray diffraction analysis. Detailed structural aspects of binding of different anionic guests toward L in its triprotonated form are examined thoroughly. Crystallographic results show binding of fluoride in the C(3v)-symmetric cavity of [H(3)L](3+) where spherical anion fluoride is in tricoordinated geometry via (N-H)(+)···F interaction in the complex [H(3)L(F)]·[F](2)·2H(2)O, (3). In the case of complexes [H(3)L(OTs)]·[OTs](2), (4) and [H(3)L(OTs)]·[NO(3)]·[OTs], (5), tetrahedral p-toluenesulphonate ion is engulfed in the cavity of [H(3)L](3+) via (N-H)(+)···O interactions. Interestingly, complex [(H(3)L)(2)(SiF(6))]·[BF(4)](4)·CH(3)OH·H(2)O, (6) shows encapsulation of octahedral hexafluorosilicate in the dimeric capsular assembly of two [H(3)L](3+) units, via a number of (N-H)(+)···F interactions. The kinetic parameters of L upon binding with different anions are evaluated using a potentiometric study in solution state. The potentiometric titration experiments in a polar protic methanol/water (1:1 v/v) binary solvent system show high affinity of the receptor toward more basic fluoride and acetate anions, with a lesser affinity for other inorganic anions (e.g., chloride, bromide, nitrate, sulfate, dihydrogenphosphate, and p-toluenesulphonate).     

NMR and X-ray studies of the chromonic lyomesophases formed by some xanthone derivatives

Optical microscopy, NMR and X-ray measurements are presented for four chromonic lyomesogens derived from 9-xanthone. The measurements provide details about the mesogen-water binary phase diagrams of the four compounds as well as quantitative information about the ordering and structural parameters of the mesophases. All four systems exhibit peritectic phase diagrams with a nematic (N) phase at low mesogen concentration and a hexagonal (H) phase at high concentration. The results are consistent with previously suggested models for chromonic lyomesophases in which columnar aggregates are formed by stacked mesogenic molecules. In the N phase these columns are parallel to the director but are otherwise randomly distributed in the bulk solvent, while in the H phase they form a two dimensional hexagonal array.     

New cadmium chloride complexes with imidazolidine-2-thione and its derivatives: X-ray structures,solid state and solution NMR and antimicrobial activity studies

Reactions of imidazolidine-2-thione (Imt), 1,3-diazinane-2-thione (Diaz) and 1,3-diazipane-2-thione (Diap) with cadmium(II) chloride in methanol result in the formation of 2:1 complexes. Both solid state and solution NMR, in addition to X-ray structures, confirm the exocyclic sulfur atom to be the donor in all cases. Cadmium shielding tensors and anisotropies were calculated from the solid-state NMR spectra. The X-ray structures of two complexes (NMeImt)₂CdCl₂ and (NEtImt)₂CdCl₂ reveal distorted tetrahedral geometries. Antimicrobial activity studies show that the Cd(Diap)₂Cl₂ complex exhibits substantial antibacterial activities compared to the corresponding Zn(II) complex.     

On the structure of protonated methane

Results of a Fourier transform-ion cyclotron resonance study are reported concerning the reactivity of protonated perdeuteromethane and deuteronated methane, generated under varying pressure conditions in an external chemical ionization ion source, toward ammonia. The competition between proton and deuteron transfer from both protonated perdeuteromethane and deuteronated methane to ammonia exhibits chemically distinguishable hydrogens. The chemical behavior of protonated methane appears to be compatible with the theoretically predicted stable structure with C_S symmetry, involving a three-center two-electron bond associating two hydrogens and the carbon atom. Interconversion of this structure due to exchange between one of these hydrogens and one of the three remaining hydrogens appears to be a fast process that is induced by interactions with the chemical ionization gas.     

X-ray diffraction and optical birefringence studies on four nematogenic difluorobenzene derivatives

The results of optical microscopy, DSC, X-ray diffraction and optical birefringence studies on four nematogenic difluorobenzene derivatives are presented. The thermal stability of the compounds increases substantially as greater flexibility is introduced into the core structure. Average intermolecular distances, obtained from X-ray data, are found to increase when a comparatively rigid planar phenyl ring is substituted by a flexible non-planar cyclohexyl ring in the core structure. From the values of apparent molecular lengths in the nematic phase, a short range antiferroelectric type of association is found to exist between neighbouring molecules. Density values suggest that the molecular packing is less efficient with increasing flexibility either in chain- or in core-structure. All the refractive indices exhibit normal dispersive behaviour, and a positive optical anisotropy is observed in all the compounds which decreases quickly with temperature. Temperature dependences of orientational order parameters, determined from both X-ray and optical birefringence studies, are presented. Variations of different physical properties with order parameters are discussed.     

Synthesis and solid state 13C-NMR studies of some cellulose derivatives

Several cellulose derivatives were synthesized and characterized by IR and ¹H-NMR spectroscopy. The positions of substitution in these derivatives were confirmed using solid state ¹³C-NMR spectroscopy techniques.     

Neighbouring group processes in the deamination of protonated phenylalanine derivatives

The gas-phase fragmentation of protonated phenylalanine and a series of its derivatives (tyrosine, 4-methylphenylalanine, 4-aminophenylalanine, 4-methoxyphenylalanine, 4-tert-butylphenylalanine, 4-fluorophenylalanine, 4-chlorophenylalanine, 4-bromophenylalanine, 4-iodophenylalanine, 4-cyanophenylalanine, 4-nitrophenylalanine, 3-fluorophenylalanine, and 3,4-dichlorophenylalanine) were examined using a combination of low energy CID in a quadrupole ion trap mass spectrometer as well as DFT calculations and RRKM modelling. In particular, the relationship between the electron-donating ability of the substituent and the competitive losses of H2O + CO and NH3 were explored through the application of the Hammett equation. It was found that electron-donating substituents promote the loss of NH3, while electron-withdrawing substituents suppress the loss of NH3 and favour the H2O + CO loss fragmentation channel instead. These observations are consistent with a neighbouring group pathway operating for the loss of NH3. Molecular orbital calculation (at the B3LYP/6-31+G(d,p) level of theory) were also performed for a range of derivatives to compare the relative transition state energy barriers for three competing mechanisms: (i) the combined loss of H2O + CO, which is triggered by an initial intramolecular proton transfer from the ammonium group to hydroxyl OH, followed by the combined loss of H2O and CO to form an immonium ion; (ii) loss of NH3 via an aryl assisted neighbouring group pathway to yield a phenonium ion; (iii) loss of NH3 via a 1,2-hydride migration process, which results in the formation of a benzyl cation. The relative energy barriers for H2O + CO loss remain nearly constant, while that for both NH3 pathways increase as the substituent moves from electron-donating to electron-withdrawing. The relative transition state energy for loss of NH3 via the aryl assisted neighbouring group pathway is always lower than that of the 1,2-hydride migration process. RRKM modelling of the DFT predicted barrier heights suggest that the rate constants for H2O + CO loss are insensitive to the substituent on the ring, while the NH3 loss channels are greatly affected by the substituent. These theoretical results are consistent with the experimental observation of the relative yields of the competing fragmentation channels. Finally, comparisons with published gas phase and condensed phase studies on related systems are made.     

On the nature of the fluorescent state of methylated indole derivatives

A quantitative study has been made of the solvent effects on the fluorescence properties of 1- and 3-methyl indole, with the aim of further understanding the origin of the unusually large Stokes shift in polar solvents. For the derivatives considered here the fluorescence transition probability is decreased in solvents of moderate and high polarities, and the spectrum shifts to the red. The data (in two-component, solute and solvent, systems) can be interpreted on the basis of the stabilisation, by solvent-solute relaxation, of a state with an increased charge-transfer character, relative to the initially excited state. Å consideration of the decay data for other indole derivatives suggests that this state has its origin in the ¹L₄ state (S₂ in non-polar media). Thus we conclude that the appropriate label of the fluorescent state of many substituted indoles in polar solvents is ¹L_a/CT. This is consistent with the observed solvent, temperature, time and substituent dependence of the decay kinetics of these derivatives.     

X-ray diffraction analysis and spectral studies of new derivatives of pyrazol-5-one

The molecular and crystal structures of 4-acetamido-2,3-dimethyl-1-phenylpyrazol-5-one (1) and 4-maleylamido-2,3-dimethyl-l-phenylpyrazol-5-one (2) were studied. The molecular conformations are stabilizedvia systems of intermolecular hydrogen bonds between the amide groups and the carbonyl oxygen atoms of the pyrazolone rings. The conformation of compound 2 is additionally stabilizediva an intramolecular interaction between the carboxyl group and the amide oxygen atom. According to the IR spectral data, protonation of the compounds under study in an acetonitrile solution occurs at the carbonyl oxygen atom of the pyrazolone ring, which is also confirmed by the UV spectral data. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1286–1292, July, 1999.     

Synthesis and characterization of some derivatives of lupinine and aminolupinine. Collision induced dissociation mass spectrometry studies of protonated molecules

Some ester, amide and thioether derivatives of lupinine, aminolupinine and bromolupinine were synthesized and characterized in order to search biologically active compounds. The protonated molecules were studied by tandem mass spectrometry using collision induced dissociation (CID) technique in order to find out how different structural features and functional groups in different quinolizidine derivatives influence fragmentation behavior. Some theoretical calculations were also made to clarify the conformations of neutral and protonated molecules, to reveal the fragmentation routes and the product ions obtained. The functional groups clearly directed the fragmentations although the typical fragments for lupinine were still observed in all the cases. Theoretical calculations were in agreement with observed fragmentations and greatly helped interpretation of the CID spectra.     

On the molecular structure of the phytochrome chromophore: X-ray analysis of two 2,3-dihydrobilatriene-abc derivatives

The molecular and crystal structures of the two 2,3-dihydrobilatrienes-abc1 and2, representing model compounds for the phytochrome chromophore, were determined by X-ray crystallography at 97 K. Crystals of the racemate1 contain disordered regions. Both molecules are found to be ofall-(Z) configuration, assuming a helical conformation. The acidic hydrogen atoms are localized at the nitrogen atoms of rings A, C and D. A summary of the geometries of unsaturated five-membered rings as observed in four accurate low-temperature crystal structures of bilatrienes-abc is given.Herrn Prof.Josef Schurz zum 60. Geburtstag gewidmet.