Synthesis and characterization of a stable bismuth(III) A3-corrole

An efficient metalation procedure for bismuth complexes with meso-substituted corrole ligands is presented. Reaction of 5,10,15-tris-pentafluorophenylcorrole H(3)(TpFPC) with Bi{N(SiMe(3))(3)} converts the free ligand H(3)(TpFPC) to a neutral low-valent species Bi(TpFPC), which has been characterized by different spectroscopic techniques. (Spectro)electrochemical studies were performed in order to describe the redox potentials of the Bi(TpFPC) complex and to ascribe the sites of electron transfer. The first crystal structure of a bismuth corrole is presented and compared to the geometry-optimized molecular structure obtained with density functional theory (DFT) calculations. We show an example of a 4-coordinate metallocorrole with a very large out-of-plane displacement and significant doming. The electronic structure of the novel bismuth corrole system is discussed in detail. Time-dependent DFT results support the proposed assignment of electronic transitions observed for the Bi(TpFPC) derivative. To account for the reactivity we investigated the photocatalytic properties of the Bi(TpFPC) complex.     

H2分子在Li3N(100)表面吸附的第一性原理研究

采用第一性原理方法研究了H₂分子在两种Li₃N(100)晶面的表面吸附情况. 通过研究Li₃N(100)/H₂体系的吸附位置、吸附能和电子结构, 发现H₂分子在Li₃N(100)晶面主要是化学吸附, 但也可以发生物理吸附. 在表面终止原子为Li和N的Li₃N(100)表面, 吸附的最稳定结构中H₂分子被解离, 最终H原子分别趋于两个N原子的顶位, 形成两个NH基, 吸附能为5.157 eV, 属于强化学吸附|此时H₂分子与Li₃N(100)表面的相互作用主要源于H1s轨道与Li₃N表层N原子的2s, 2p轨道重叠杂化的贡献, 且N-H键为共价键. 在表面终止原子为Li的Li₃N(100)表面, 吸附的最稳定结构中H₂分子也被解离, H原子趋于穴位, 吸附能为2.464 eV, 也属于强化学吸附|此时Li和Ｈ之间为较强的离子键相互作用.     

Electronic composition-property relationship applied to SO2 chemisorption on Pt111 surfaces, alloys, and overlayers

We have developed a new electronic composition-property relationship between the adsorption energy of molecules binding unequally to multiple atoms on metal surfaces and the electronic properties of the surface. This relationship allows the estimation of the relative stability of adsorbates on various surfaces, assuming that the adsorbate adopts the same local configuration on each surface, and therefore also allows the estimation of the adsorption energy of molecules through large regions of parameter space in alloy systems with data from only a few explicit calculations. We have applied this relationship to the adsorption of SO(2) on Pt surfaces alloyed with Pd, Cu, Ru, and Ni. Using a new formula for weighting the metal d-band, we found a strong linear relationship between the weighted positions of the d states of surfaces and the most stable molecular adsorption energies. The consequences of our electronic composition-property relationship for catalyst design are also discussed.     

Stabilization of high-valent metals by corroles: oxo[tris(pentafluorophenyl)corrolato]chromium(V)

The aerobic reaction of Cr(CO)6 with tris(pentafluorophenyl)corrole (H3(TpFPC)) in toluene gives the dark red oxochromium(V) compound (TpFPC)Cr(O), which has been characterized by X-ray crystallography, electrochemistry, and EPR spectroscopy. Short Cr-N (1.927-1.943 A) bonds as well as relatively large 14N and small 53Cr coupling constants suggest that sigma (N-->Cr) donation is responsible for the unusual stability of chromium(V) in this complex. The CrV/IV reduction potential (0.11 V vs Ag/AgCl) is 0.65 V below that of oxo(tetramesitylporphinato)chromium(V).     

Adsorption and reaction of CO and CO2 on oxidized and reduced SrTiO3(100) surfaces

The adsorption and reaction of CO and CO(2) on oxidized and reduced SrTiO(3)(100) surfaces have been studied with temperature programmed desorption (TPD) and X-ray photoelectron spectroscopy (XPS). XPS results indicate that the oxidized SrTiO(3)(100) surfaces are nearly defect-free with predominantly Ti(4+) ions whereas the sputter-reduced surfaces contain substantial amounts of defects. Both CO and CO(2) are found to adsorb weakly on the oxidized SrTiO(3)(100) surfaces. On sputter-reduced surfaces, enhanced reactivity of CO and CO(2) is observed due to the presence of oxygen vacancy sites, which are responsible for dissociative adsorption of these molecules. Our studies indicate that the CO and CO(2) molecules exhibit relatively weaker interactions with SrTiO(3)(100) compared to those with TiO(2)(110) and TiO(2)(100) surfaces. This is most likely an influence of the Sr cations on the electronic structure of the Ti cations in the mixed oxide of SrTiO(3).     

Water clusters on graphite: methodology for quantum chemical a priori prediction of reaction rate constants

The properties, interactions, and reactions of cyclic water clusters (H(2)O)(n=1-5) on model systems for a graphite surface have been studied using pure B3LYP, dispersion-augmented density functional tight binding (DFTB-D), and integrated ONIOM(B3LYP:DFTB-D) methods. Coronene C(24)H(12) as well as polycircumcoronenes C(96)H(24) and C(216)H(36) in monolayer, bilayer, and trilayer arrangements were used as model systems to simulate ABA bulk graphite. Structures, binding energies, and vibrational frequencies of water clusters on mono- and bilayer graphite models have been calculated, and structural changes and frequency shifts due to the water cluster-graphite interactions are discussed. ONIOM(B3LYP:DFTB-D) with coronene and water in the high level and C(96)H(24) in the low level mimics the effect of extended graphite pi-conjugation on the water-graphite interaction very reasonably and suggests that water clusters only weakly interact with graphite surfaces, as suggested by the fact that water is an excellent graphite lubricant. We use the ONIOM(B3LYP:DFTB-D) method to predict rate constants for model pathways of water dissociative adsorption on graphite. Quantum chemical molecular dynamics (QM/MD) simulations of water clusters and water addition products on the C(96)H(24) graphite model are presented using the DFTB-D method. A three-stage strategy is devised for a priori investigations of high temperature corrosion processes of graphite surfaces due to interaction with water molecules and fragments.     

The interaction of CO with PdAg/Pd(111) surface alloys--a case study of ensemble effects on a bimetallic surface

The interaction of CO with structurally well-defined PdAg/Pd(111) surface alloys was investigated by temperature-programmed desorption (TPD) and high-resolution electron energy loss spectroscopy (HREELS) to unravel and understand contributions from electronic strain, electronic ligand and geometric ensemble effects. TPD measurements indicate that CO adsorption is not possible on the Ag sites of the surface alloys (at 120 K) and that the CO binding strength on Pd sites decreases significantly with increasing Ag concentration. Comparison with previous scanning tunneling microscopy (STM) data on the distribution of Pd and Ag atoms in the surface alloy shows that this modification is mainly due to geometric ensemble effects, since Pd(3) ensembles, which are the preferred ensembles for CO adsorption on non-modified Pd(111), are no longer available on Ag-rich surfaces. Consequently, the preferred CO adsorption site changes with increasing Ag content from a Pd(3) trimer via a Pd(2) dimer to a Pd monomer, going along with a successive weakening of CO adsorption. Additionally, the CO adsorption properties of the surface alloys are also influenced by electronic ligand and strain effects, but on a lower scale. The results are discussed in comparison with previous findings on PdAg bulk alloys, supported PdAg catalysts and PdAu/Pd(111) model systems.     

Adsorption of water molecules on selected charged sodium-chloride clusters

The adsorption of water molecules (H(2)O) on sodium chloride cluster cations and anions was studied at 298 K over a mass range of 100-1200 amu using a custom-built laser desorption ionization reactor and mass spectrometer. Under the conditions used, the cations Na(3)Cl(2)(+) and Na(4)Cl(3)(+) bind up to three water molecules, whereas the larger cations, Na(5)Cl(4)(+) to Na(19)Cl(18)(+), formed hydrates with one or two only. The overall trend is a decrease in hydration with increasing cluster size, with an abrupt drop occurring at the closed-shell Na(14)Cl(13)(+). As compared to the cluster cations, the cluster anions showed almost no adsorption. Among smaller clusters, a weak adsorption of one water molecule was observed for the cluster anions Na(6)Cl(7)(-) and Na(7)Cl(8)(-). In the higher mass region, a substantial adsorption of one water molecule was observed for Na(14)Cl(15)(-). Density functional theory (DFT) computations were carried out for the adsorption of one molecule of H(2)O on the cations Na(n)Cl(n-1)(+), for n = 2-8, and the anions Na(n)Cl(n+1)(-), for n = 1-7. For each ion, the structure of the hydrate, the hydration energy, and the standard-state enthalpy, entropy, and Gibbs energy of hydration at 298 K were computed. In addition, it was useful to compute the distortion energy, defined as the electronic energy lost due to weakening of the Na-Cl bonds upon adsorption of H(2)O. The results show that strong adsorption of a H(2)O molecule occurs for the linear cations only at an end Na ion and for the nonlinear cations only at a corner Na ion bonded to two Cl ions. An unexpected result of the theoretical investigation for the anions is that certain low-energy isomers of Na(6)Cl(7)(-) and Na(7)Cl(8)(-) bind H(2)O strongly enough to produce the observed weak adsorption. The possible implications of these results for the initial hydration of extended NaCl surfaces are discussed.     

The synergistic effects of the Cu-CeO2(111) catalysts on the adsorption and dissociation of water molecules

The interaction of water molecules with the Cu-CeO(2)(111) catalyst (Cu/CeO(2) and Cu(0.08)Ce(0.92)O(2)) is studied systematically by using the DFT+U method. Although both molecular and dissociative adsorption states of water are observed on all the considered Cu-CeO(2)(111) systems, the dissociation is preferable thermodynamically. Furthermore, the dissociation of water molecule relates to the geometric structure (e.g. whether or not there are oxygen vacancies; whether or not the reduced substrate retains a fluorite structure) and the electronic structure (e.g. whether or not there is reduced cerium, Ce(3+)) of the substrate.In addition, the adsorption of water molecules induces variations of the electronic structure of the substrate, especially for Cu/CeO(2-x)(111)-B (a Cu atom adsorbed symmetrically above the vacancy of the reduced ceria) and highly reduced Cu(0.08)Ce(0.92)O(2)(111), i.e. the Cu(0.08)Ce(0.92)O(2-x)(111)-h. The variations of electronic structure promote the dissociation of water for the highly reduced system Cu(0.08)Ce(0.92)O(2-x)(111)-h. More importantly, the improvement of WGS reaction by Cu-ceria is expected to be by the associative route through different intermediates.     

Dynamical calculations of charge-transfer-to-solvent excited states of small I- (CH3CN)n clusters

Relaxation dynamics of photoexcited charge-transfer-to-solvent (CTTS) states for the I(-)(CH(3)CN)(n) (n = 2 and 3) clusters has been theoretically studied using electronic structure methods. First, we have calculated several lowest singlet and triplet potential energy surfaces using the multireference configuration interaction method. It was found that the character of the singlet CTTS excited-state potential surfaces is very similar to that of the triplet CTTS states. Due to a small singlet-triplet splitting, the lowest triplet potential energy surface was used as a good model to understand the dynamics of the photoexcited singlet CTTS states. We have carried out direct molecular dynamics simulations on the lowest triplet surface at the B3LYP level. When an I(-) anion is exteriorly solvated by CH(3)CN molecules, we found that the (CH(3)CN)(n)(-) anion cluster is effectively produced. In addition, when the I(-) anion is placed in the interior in I(-)(CH(3)CN)(n) clusters, photoexcitation gives an acetonitrile monomer anion plus neutral monomers. However, if the initial geometric configuration is distorted from the minimum structure, we also found that the (CH(3)CN)(2)(-) anion cluster, where an excess electron is internally trapped, is formed via I(-)(CH(3)CN)(2) + hnu --> I + (CH(3)CN)(2)(-) process.     

Adsorption characteristic of self‐assembled corrole dimers on HOPG

Our study first focus on two types of corrole dimers oxidized and reduced forms on highly oriented pyrolytic graphite (HOPG) surface. Scanning tunneling microscopy (STM), X‐ray photoelectron spectroscopy (XPS) and contact angle measurement (CAM) were used to investigate the self‐assembled monolayers of corrole dimers adsorbed on HOPG surfaces at room temperature in air. XPS and CAM results have confirmed both two molecules adsorbed on an HOPG surface and formed self‐assembled films, and STM experiments found that the corrole dimers adsorbed on HOPG surfaces form similar lobes. The different stable space structure of the oxidized form molecule (OFM) and reduced form molecule (RFM), led to the diversity of the tetramer structural dimensions. The occurrence of molecular aggregations and assembly was controlled by the interactions between molecular–molecular and molecule–substrate. The electrostatic interactions between the molecules control the geometrical sizes and molecule–substrate interactions determine topographical shapes of the self‐assembled corrole dimers on HOPG surface. Copyright © 2009 John Wiley & Sons, Ltd.     

The effect of gas adsorption on the field emission mechanism of carbon nanotubes

We have investigated systematically the effects of various gas adsorbates (H2, N2, O2, and H2O) on the electronic structures and the field emission properties of open edges of single-walled carbon nanotubes by density functional calculations. All of the molecules, except N2, dissociate and chemisorb on open nanotube edges with large adsorption energies. The Fermi levels are moved toward the valence (conduction) bands for O2 (H2, H2O) adsorption induced by the Mulliken charge transfer on the tube edge. The Fermi level shift for N2 adsorption is negligible. Adsorption of H2O enhances the field emission current, whereas H2 adsorption does not affect the field emission current much because of the absence of the density of states near the Fermi level. The correlation of the electronic structures and the field emission current is further discussed.     

Saturated adsorption of CO and coadsorption of CO and O2 on AuN- (N=2-7) clusters

A first-principles quantum chemistry method, based on the Kohn-Sham density-functional theory, is used to investigate the adsorption of CO and O2 on small gas-phase gold cluster anions. The saturated adsorption of carbon monoxide on gold cluster anions AuN- (N=2-7) is discussed. The adsorption ability of CO reduces with the increase of the number of CO molecules bound to gold cluster anions, resulting in saturated adsorption at a certain amount of absorbed CO molecules, which is determined by geometric and electronic properties of gold clusters cooperatively. The effect of CO preadsorption on the electronic properties of gold cluster anions depends on the cluster size and the number of adsorbed CO, and the vertical detachment energies of CO-adsorbed gold cluster anions show a few changes with respect to corresponding pure gold cluster anions. The results indicate that the impinging adsorption of CO molecules may lead to geometry structure transformation on Au3- cluster. For the coadsorption of CO and O2 on Au2-, Au3- isomers, Au4-, and Au6-, we describe the cooperative adsorption between CO and O2, and find that the O2 dissociation is difficult on gas-phase gold cluster anions even with the preadsorption of CO.     

Glycine at the pyrite-water interface: the role of surface defects

Ab initio molecular dynamics simulations were performed in order to study chemisorption, electronic properties, and desorption of glycine at wet pyrite surfaces focusing on the role of surface point defects. The change in the electronic structure and its influence on the chemical reactivity of the free FeS(2)(100) surface due to sulfur vacancies was studied in detail yielding several adsorption modes of glycine and water molecules. Energetically preferred adsorption modes were furthermore investigated in the presence of hot pressurized water mimicking "Iron Sulfur World" prebiotic conditions. The metadynamics Car-Parrinello technique was employed to map the free energy landscape including paths and barriers for desorption of glycine from such wet defective surfaces. The ubiquitous sulfur vacancies are found to increase the retention time of the adsorbed amino acid by many orders of magnitudes in comparison to the ideal pyrite-water interface. The importance of these findings in terms of a possible two-dimensional primordial chemistry on mineral surfaces is discussed.     

Infrared spectroscopy of physisorbed and chemisorbed N2 in the Pt(111)(3x3)N2 structure

Using infrared spectroscopy and low electron energy diffraction, we have investigated the adsorption of N(2), at 30 K, on the Pt(111) and the Pt(111)(1x1)H surfaces. At monolayer coverage, N(2) orders in commensurate (3x3) structures on both surfaces, and we propose that the unit cells contain four molecules in each case. The infrared spectra reveal that N(2) exclusively physisorbs on the Pt(111)(1x1)H surface, while both physisorbed and chemisorbed N(2) is detected on the Pt(111) surface. Physisorbed N(2) is the majority species in the latter case, and the two adsorption states show an almost identical uptake behavior, which indicates that they are intrinsic constituents of the growing (3x3) N(2) islands. An analysis of the infrared absorbance data, based on a simple scaling concept suggested by density functional theory calculations, supports a model in which the (3x3) unit cell contains one chemisorbed molecule in end-on atop configuration and three physisorbed molecules. We note that a classic "pinwheel" structure on a hexagonal lattice, with the end-on chemisorbed N(2) molecules acting as "pins," is compatible with this composition.     

二维金属-六亚氨基苯框架材料的气体吸附效应

利用密度泛函理论研究了气体分子(NH₃, H₂O, H₂S, NO₂)吸附在二维M₃(HIB)₂(M=Ni, Cu; HIB为六亚氨基苯)薄膜上体系的几何结构和电子结构的变化. 结果表明, 2种薄膜对气体分子的响应不同. 其中NH₃, H₂O和H₂S在M₃(HIB)₂薄膜表面的吸附较弱, 主要与薄膜的亚氨基形成氢键, 吸附能均小于-0.36 eV, 吸附对体系电子性质的影响很小. 但是 NO₂分子在薄膜表面形成化学吸附, 吸附能在-0.65~-1.72 eV范围内. 吸附NO₂分子使其电子结构发生明显改变, 如Cu₃(HIB)₂在费米能级处打开带隙, 由金属性质转变为半导体性质. 这是由于NO₂分子的p_z轨道与金属原子$d_{z}^{2}$ 轨道发生了强烈的轨道杂化. 此外, 研究发现高浓度的NO₂分子吸附能够使Ni₃(HIB)₂薄膜由非磁性变为磁性体系, 由普通金属性质变为半金属性质; 而高浓度的NO₂分子使Cu₃(HIB)₂薄膜由金属性质变为半导体性质, 薄膜电导率降低.     

Scanning tunneling spectroscopy simulations of poly(3-dodecylthiophene) chains adsorbed on highly oriented pyrolytic graphite

We report on a hybrid scheme to perform efficient and accurate simulations of scanning tunneling spectroscopy (STS) of molecules weakly bonded to surfaces. Calculations are based on a tight binding (TB) technique, including a self-consistent calculation of the electronic structure of the molecule, to predict STS conductance spectra. The use of a local basis makes our model easily applicable to systems with several hundreds of atoms. We performed first-principles density-functional calculations to extract the geometrical and electronic properties of the system. In this way, we can include, in the TB scheme, the effects of structural relaxation upon adsorption on the electronic structure of the molecule. This approach is applied to the study of regioregular poly(3-dodecylthiophene) polymer chains adsorbed on highly oriented pyrolytic graphite. Results of spectroscopic calculations are discussed and compared with recently obtained experimental data.     

From dewetting to wetting molecular layers: C60 on CaCO3(10 ̅14) as a case study

We report the formation of extended molecular layers of C(60) molecules on a dielectric surface at room temperature. In sharp contrast to previous C(60) adsorption studies on prototypical ionic crystal surfaces, a wetting layer is obtained when choosing the calcite (CaCO(3))(10 ?14) surface as a substrate. Non-contact atomic force microscopy data reveal an excellent match of the hexagonal lattice of the molecular layer with the unit cell dimension of CaCO(3)(10 ?14) in the [01 ?10] direction, while a lattice mismatch along the [ ?4 ?261] direction results in a large-scale moiré modulation. Overall, a (2 × 15) wetting layer is obtained. The distinct difference observed microscopically upon C(60) adsorption on CaCO(3)(10 ?14) compared to other dielectric surfaces is explained by a macroscopic picture based on surface energies. Our example demonstrates that this simple surface-energy based approach can provide a valuable estimate for choosing molecule-insulator systems suitable for molecular self-assembly at room temperature.