Accidental vibrational degeneracy in vibrational excited states observed with ultrafast two-dimensional IR vibrational echo spectroscopy

The coupling between the OD stretch v=2 level and benzene-ring modes in 2-methoxyphenol-OD (hydroxyl H replaced by D) is observed with ultrafast two-dimensional (2D) IR vibrational echo spectroscopy. Because of this coupling, the 1-2 transition peak in the 2D spectrum is split into a doublet with peaks of approximately equal amplitudes. Several molecules and solvents were used to study this phenomenon. Near-IR (NIR) spectroscopy measurements and density-functional theory calculations (B3LYP6-31+G(d,p) level) were also applied. Experimental results and calculations show that the OD stretch 1-2 transition is coupled to a combination band related to the benzene-ring motions. A simple quantum-mechanical model indicates that the combination band has a frequency of 5172 and 5176.5 cm(-1) in CCl4 and hexane, respectively. The transition between this combination band and the ground state is too weak to detect by NIR. The transition between this band and the OD stretch first excited state is also so weak that most of the intensity of the doublet comes from the oscillator strength produced by coupling to the OD stretch. The model gives the coupling strengths as 6.5 and 7 cm(-1) in CCl4 and hexane, respectively.     

Towards numerical vibrational spectroscopy

From the mathematical standpoint, it is possible to reduce a spectral study to the solution of the so-called inverse spectral problems. In practice, the inverse problem is solved through consistent comparison of the spectrum of the model with the experimental spectrum, the degree of closeness between theoretical and experimental spectra providing a quality criterion for the solution. The model may be characterized by different levels of complexity. This paper discusses the course of recent developments in theoretical spectroscopy, the present state-of-the-art, and forecasts future union of experimental and theoretical methods.     

DNA vibrational coupling revealed with two-dimensional infrared spectroscopy: insight into why vibrational spectroscopy is sensitive to DNA structure

Two-dimensional infrared (2D IR) spectroscopy was used to study the carbonyl vibrational modes of guanine and cytosine bases in A- and B-form DNA. Located between 1600 and 1700 cm(-1), these modes are often used to monitor DNA secondary structure with traditional infrared spectroscopies such as FTIR, but traditional spectroscopies lack the necessary observables to unravel the coupling mechanisms that make these modes sensitive to secondary structure. By using 2D IR spectroscopy and electronic structure calculations on d(G(5)C(5)) and d(GC)(8) model nucleic acids, we find that hydrogen-bonded guanine/cytosine base pairs are primarily electrostatically coupled and that the coupling between these modes can be modeled with a transition dipole density approach. In comparison, electrostatics is insufficient to model stacked bases because of cooperative charge-sharing effects, but the coupling can be accurately calculated using a finite difference method. We find that the coupling is very strong for both hydrogen-bonded and stacked base geometries, creating vibrational modes that extend both across the base pairs and along the lengths of the helices. Our results provide a physical basis for understanding how strong coupling gives rise to the empirically established relationship between infrared spectroscopy and DNA/RNA secondary structure.     

Dynamics of water probed with vibrational echo correlation spectroscopy

Vibrational echo correlation spectroscopy experiments on the OD stretch of dilute HOD in H(2)O are used to probe the structural dynamics of water. A method is demonstrated for combining correlation spectra taken with different infrared pulse bandwidths (pulse durations), making it possible to use data collected from many experiments in which the laser pulse properties are not identical. Accurate measurements of the OD stretch anharmonicity (162 cm(-1)) are presented and used in the data analysis. In addition, the recent accurate determination of the OD vibrational lifetime (1.45 ps) and the time scale for the production of vibrational relaxation induced broken hydrogen bond "photoproducts" ( approximately 2 ps) aid in the data analysis. The data are analyzed using time dependent diagrammatic perturbation theory to obtain the frequency time correlation function (FTCF). The results are an improved FTCF compared to that obtained previously with vibrational echo correlation spectroscopy. The experimental data and the experimentally determined FTCF are compared to calculations that employ a polarizable water model (SPC-FQ) to calculate the FTCF. The SPC-FQ derived FTCF is much closer to the experimental results than previously tested nonpolarizable water models which are also presented for comparison.     

OH-stretch vibrational spectroscopy of hydroxymethyl hydroperoxide

We report measurement and analysis of the photodissociation spectrum of hydroxymethyl hydroperoxide (HOCH(2)OOH) and its partially deuterated analogue, HOCD(2)OOH, in the OH-stretching region. Spectra are obtained by Fourier transform infrared spectroscopy in the 1nu(OH) and 2nu(OH) regions, and by laser induced fluorescence detection of the OH fragment produced from dissociation of HOCH(2)OOH initiated by excitation of the 4nu(OH) and 5nu(OH) overtone regions (action spectroscopy). A one-dimensional local-mode model of each OH chromophore is used with ab initio calculated OH-stretching potential energy and dipole moment curves at the coupled-cluster level of theory. Major features in the observed absorption and photodissociation spectra are explained by our local-mode model. In the 4nu(OH) region, explanation of the photodissocation spectrum requires a nonuniform quantum yield, which is estimated by assuming statistical energy distribution in the excited state. Based on the estimated dissociation threshold, overtone photodissociation is not expected to significantly influence the atmospheric lifetime of hydroxymethyl hydroperoxide.     

Heterodyne-detected vibrational sum frequency generation spectroscopy

We present a new technique of broad-band heterodyne-detected sum frequency generation (HD-SFG) spectroscopy and demonstrate its high sensitivity allowing surface-selective measurements of vibrational spectra at submonolayer surface coverage, as low as a few percent of a monolayer. This was achieved without the help of surface enhancement phenomena, on a transparent dielectric substrate (water), and without introducing fluorescent labels, in fact, without utilizing any electronic resonances. Only the intrinsic vibrational transitions were employed for the detection of the analyte molecules (1-octanol). Unlike conventional (homodyne-detected) SFG spectroscopy, where the signal intensity decreases quadratically with decreasing surface coverage, in HD-SFG, the scaling is linear, and the signal is amplified by interference with a reference beam, significantly improving sensitivity and detection limits. At the same time, HD-SFG provides the phase as well as the amplitude of the signal and thus allows accurate subtraction of the non-resonant background--a common problem for surfaces with low concentrations of analyte molecules (i.e., weak resonant signals).     

High-pressure vibrational spectroscopy of sulfur dioxide

Solid sulfur dioxide was investigated by vibrational spectroscopy over a broad pressure and temperature range, extending to 32.5 GPa at 75-300 K in diamond anvil cells. Synchrotron infrared spectra provided the first measurements of the pressure dependence of the lattice modes in the far-IR region. Below 17.5 GPa, two fundamentals exhibit splittings enhanced by pressure. The asymmetric stretching mode of SO(2) exhibits a remarkable pressure-induced softening. The observations are consistent with the ambient pressure Raman measurements indicating that SO(2) crystallizes in an acentric cell, but are inconsistent with a previously proposed interpretation that the structure of the high-pressure phase consists of (SO(2))(3) clusters. Dramatic changes in the Raman spectra are found above 17.5 GPa at room temperature. These indicate major changes in structure and possible formation of SO(2) clustering with an enlarged unit cell. The behavior at low temperature differs from that at room temperature. These findings provide constraints on the phase diagram of sulfur dioxide.     

Real-time investigation of lung surfactant respreading with surface vibrational spectroscopy

The respreading of a lung surfactant monolayer at the air-water interface is investigated with broad bandwidth sum frequency generation (BBSFG) spectroscopy. The lung surfactant mixture contains chain perdeuterated dipalmitoylphosphatidylcholine (DPPC-d62), palmitoyloleoylphosphatidylglycerol (POPG), palmitic acid (PA), and KL4 (a 21-residue polypeptide analogue to the surfactant protein SP-B). DPPC-d62 serves as a probe molecule for the spectroscopic investigation. The BBSFG spectra of DPPC-d62 in the lung surfactant mixture are obtained in the C-D stretching region in real-time during film compression and expansion in a Langmuir trough. The BBSFG intensity of the CD3 stretch peak from DPPC-d62 terminal methyl groups is used as a measure of the interfacial density of DPPC-d62 after careful consideration of orientation effects. For the first time, the interfacial loss of DPPC in a complex lung surfactant mixture is quantified. Spectroscopic results reveal that there is an 18% DPPC-d62 interfacial loss during film respreading. However, the surface pressure-area isotherm measurements demonstrate that there is a rather large trough area reduction (37%) during film expansion. The relatively small interfacial loss of DPPC-d62 and the rather large trough area reduction indicate that the respreading of DPPC and non-DPPC components in the lung surfactant is not uniform and a surface refinement process exists during film compression and expansion. This refinement process results in a DPPC-enriched monolayer with a significant depletion of non-DPPC components after film respreading. Implication for replacement surfactant design from this work is discussed.     

Interactions of L-alanine with alumina as studied by vibrational spectroscopy

The interactions of L-alanine with gamma- and alpha-alumina have been investigated by diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS). L-alanine/alumina samples were dried from aqueous suspensions, at 36.5 degrees C, with two amino acid concentrations (0.4 and 0.8 mmol g-1) and at different pH values (1, 6, and 13). The vibrational spectra proved that the nature of L-alanine interactions with both aluminas is the same (hydrogen bonding), although the groups involved depend on the L-alanine form and on alumina surface groups, both controlled by the pH. For samples prepared at pH 1, cationic L-alanine [CH3CH(NH3+)COOH] displaces physisorbed water from alumina, and strong hydrogen bonds are established between the carbonyl groups of alanine, as electron donors, and the surface Al-OH2+ groups of alumina. This occurs at the expense of alanine dimer dissociation and breaking of intramolecular bonds. When samples are prepared at pH 6, the interacting groups are Al-OH2+ and the carboxylate groups of zwitterionic L-alanine [CH3CH(NH3+)COO-]. The affinity of L-alanine toward alumina decreases, as the strong NH3+...-OOC intermolecular hydrogen bonds prevail over the interactions with alumina. Thus, for a load of 0.8 mmol g-1, phase segregation is observed. On alpha-alumina, crystal deposition is even observed for a load of 0.4 mmol g-1. At pH 13, the carboxylate groups of anionic L-alanine [CH3CH(NH2)COO-] are not affected by alumina. Instead, hydrogen bond interactions occur between NH2 and the Al-OH surface groups of the substrate. Complementary N2 adsorption-desorption isotherms showed that adsorption of L-alanine occurs onto the alumina pore network for samples prepared at pH 1 and 13, whereas at pH 6 the amino acid/alumina interactions are not strong enough to promote adsorption. The mesoporous structure and the high specific surface area of gamma-alumina make it a more efficient substrate for adsorption of L-alanine. For each alumina, however, it is the nature of the specific interactions and not the porosity of the substrate that determines the adsorption process.     

Intramolecular vibrational redistribution following optical excitation

We study the time-dependence of vibrational redistribution following the excitation of a zero-order harmonic state. Two models are considered: (i) the (unphysical) case of a unique anharmonic coupling matrix element gives rise to very strong coherence effects, resulting in a very slow redistribution, at the time scale of the recurrence time 2 π?, characteristic of the manifold; (ii) on the contrary, a random distribution of the coupling matrix elements results into a redistribution rate; Δ_a = 2 π? ΔV²_a — where ΔV²_a is the variance of the distribution — with no influence of its average value. This last model is extended to the case of an initial excitation of mixed states which result from a selective coupling of a radiative state with some vibronic states of a non-radiative manifold. The experimental results available in the literature are reviewed; redistribution following an optical excitation of large molecules, with a vibrational excess energy as high as 5000 to 10000 cm^?1, is generally a slow process (≤ 10⁷ s^?1), in contrast with vibrational relaxation in the condensed phases.     

Characterization of PVDF membranes by vibrational spectroscopy

In order to investigate the effectiveness of vibrational spectroscopy in the characterization of polymeric membranes, several poly(vinylidene fluoride) (PVDF) membranes with different porous structures were prepared by the phase inversion process using different casting solvents. An accurate analysis of the Fourier transform Raman (FT-Raman) and the Fourier transform infrared (FTIR) spectra was performed for each sample and the scanning electron microscopy (SEM) results were noted. To highlight the specific problems related to porosity and surface roughness in the acquisition of spectra by different sampling techniques, the attenuated total reflection (ATR) and photoacoustic spectroscopy (PAS) spectra were compared with corresponding spectra obtained from dense films. A detailed analysis of these spectra highlighted their ability in determining the differences in the polymer structure between the two membrane sides. This indicates that (considering the results given by all the different techniques) thorough qualitative membrane characterization can generally be achieved. Moreover, the good quality spectra of the PVDF membrane provide information on a portion of material which depends on its structure, highlighting the usefulness of FTIR-PAS in studying porous materials which, as a rule, give low quality infrared spectra when other sampling techniques are used. However, the complex and inhomogeneous structure of these materials can make quantitative analysis more, or less, difficult.     

Time-resolved vibrational spectroscopy of a molecular shuttle

Time-resolved vibrational spectroscopy is used to investigate the inter-component motion of an ultraviolet-triggered two-station molecular shuttle. The operation cycle of this molecular shuttle involves several intermediate species, which are observable in the amide I and amide II regions of the mid-IR spectrum. Using ab initio calculations on specific parts of the rotaxane, and by comparing the transient spectra of the normal rotaxane with that of the N-deuterated version, we can assign the observed vibrational modes of each species occurring during the shuttling cycle in an unambiguous way. The complete time- and frequency-dependent data set is analyzed using singular value decomposition (SVD). Using a kinetic model to describe the time-dependent concentrations of the transient species, we derive the absorption spectra associated with each stage in the operation cycle of the molecular shuttle, including the recombination of the charged species.     

Probing polymer surfaces and interfaces using sum frequency generation vibrational spectroscopy - a powerful nonlinear optical technique

Sum frequency generation (SFG) vibrational spectroscopy has been proved to be a powerful technique which substantially impacts on many research areas in surface and interfacial sciences. This paper reviews the recent progress of applying this nonlinear optical technique in the studies of polymer surfaces and interfaces. The theoretical background of SFG is introduced first. Current applications of SFG in polymer science are then described in more detail to demonstrate the significance of this technique. Finally, a short summary is presented on this relatively new but widely applicable spectroscopic technique.     

Inelastic electron tunneling spectroscopy and vibrational coupling

We discuss the relationship between the inelastic electron tunneling spectroscopy (IETS) and vibronic coupling constant within the Green's function formalism at a level of perturbation theory approximation. We also compare our results with experimental measurements. Our results can provide insights into the mechanism of active vibronic modes for IETS.     

Overtone surface vibrational spectroscopy of zeolite-encaged molecules

Overtone spectra of adsorbed molecules yield information complementary to that obtained from the fundamentals, (i) enabling to follow the formation and development of bands up to high coverages, (ii) facilitating the assignment of bands, (iii) giving indication to the processes governing the bandshape and (iv) in case of diatomics making feasible the determination of changes of the constants of intramolecular potential, and so of the dissociation energy. The practicability is demonstrated by diatomics adsorbed in Mg²⁺-exchanged zeolite A.     

Ultrafast vibrational spectroscopy of the flavin chromophore

Ultrafast time-resolved infrared (TRIR) spectra of flavin adenine dinucleotide (FAD) and the anion of lumiflavin (Lf-) are described. Ground-state recovery and excited-state decay of FAD reveal a common dominant ultrafast relaxation and a minor slower component. The Lf- transient lacks a fast component. No intermediate species are observed, suggesting that the quenching mechanism is internal conversion promoted by interaction of the adenine and isoalloxazine rings in FAD. Modes are assigned, and the potential for extension of the TRIR method to photoactive proteins is discussed.     

Following photoinduced dynamics in bacteriorhodopsin with 7-fs impulsive vibrational spectroscopy

Sub-10-fs laser pulses are used to impulsively photoexcite bacteriorhodopsin (BR) suspensions and probe the evolution of the resulting vibrational wave packets. Fourier analysis of the spectral modulations induced by transform-limited as well as linearly chirped excitation pulses allows the delineation of excited- and ground-state contributions to the data. On the basis of amplitude and phase variations of the modulations as a function of the dispersed probe wavelength, periodic modulations in absorption above 540 nm are assigned to ground-state vibrational coherences induced by resonance impulsive Raman spectral activity (RISRS). Probing at wavelengths below 540 nm-the red edge of the intense excited-state absorption band-uncovers new vibrational features which are accordingly assigned to wave packet motions along bound coordinates on the short-lived reactive electronic surface. They consist of high- and low-frequency shoulders adjacent to the strong C=C stretching and methyl rock modes, respectively, which have ground-state frequencies of 1008 and 1530 cm-1. Brief activity centered at approximately 900 cm-1, which is characteristic of ground-state HOOP modes, and strong modulations in the torsional frequency range appear as well. Possible assignments of the bands and their implication to photoinduced reaction dynamics in BR are discussed. Reasons for the absence of similar signatures in the pump-probe spectral modulations at longer probing wavelengths are considered as well.