Efficient Structural Characterization of Poly(Methacrylic Acid) by Activated-Electron Photodetachment Dissociation

Characterization of end-groups in poly(methacrylic acid) (PMAA) was achieved using tandem mass spectrometry after activated-electron photodetachment dissociation (activated-EPD). In this technique, multiply deprotonated PMAA oligomers produced in the negative-ion mode of electrospray ionization were oxidized into radical anions upon electron photodetachment using a 220 nm laser wavelength, and further activated by collision. In contrast to conventional collision induced dissociation of negatively charged PMAA, which mainly consists of multiple dehydration steps, fragmentation of odd-electron species is shown to proceed via a radical-induced decarboxylation, followed by reactions involving backbone bond cleavages, giving rise to product ions containing one or the other oligomer termination. A single radical-induced mechanism accounts for the four main fragment series observed in MS/MS. The relative position of the radical and of the anionic center in distonic precursor ions determines the nature of the reaction products. Experiments performed using PMAA sodium salts allowed us to account for relative abundances of product ions in series obtained from PMAA, revealing that ion stability is ensured by hydrogen bonds within pairs of MAA units.     

Ultraviolet photodissociation of protonated pharmaceuticals in a pressurized linear quadrupole ion trap

Ultraviolet photodissociation (UVPD) was evaluated as a technique for generating ion fragmentation information that is alternative and/or complementary to the information obtained by collision‐induced dissociation (CID). Ions trapped in a pressurized linear ion trap were dissociated using a 355 nm or a 266 nm pulsed laser. Comparisons of UVPD and CID spectra using a set of aromatic chromophore‐containing compounds (desmethyl bosentan, haloperidol, nelfinavir) demonstrated distinct characteristic fragmentation patterns resulting from photodissociation. The wavelength of light and the pressure of the buffer gas in the UVPD cell are important parameters that control fragmentation pathways. The wavelength effect is related to the absorption cross section, location of the chromophore and the energy carried by one photon. Thus, UV irradiation wavelength affects fragmentation pathways as well as the fragmentation rate. The pressure effect can be explained by collisional quenching of ‘slow’ fragmentation pathways. We observed that higher pressure of the buffer gas during UVPD experiments highlights unique fragment ions by suppressing slow fragmentation pathways responsible for CID‐like fragmentation patterns. Copyright © 2010 John Wiley & Sons, Ltd.     

Ultraviolet photodissociation of chromophore-labeled oligosaccharides via reductive amination and hydrazide conjugation

The fragmentation patterns of hydrazide-conjugated and reductively aminated oligosaccharides, including lacto-N-fucopentaoses and lacto-N-difucohexaoses, produced on collisionally induced dissociation (CID) and ultraviolet photodissociation (UVPD) in a quadrupole ion trap are presented. The two derivatization methods generate different cross-ring cleavages on UVPD and CID. UVPD of hydrazide-conjugated oligosaccharides yield predominant (2, 4)A-type cross-ring cleavage ions. In contrast, UVPD of aminated oligosaccharides results mainly in (0, 1)A-type ions. Moreover, more extensive dual-cleavage pathways (i.e. internal fragment ions) were observed on UVPD.     

Specific photodissociation of peptides with multi-stage mass spectrometry

We report collision-induced dissociation (CID) and laser-induced dissociation (LID) performed at different wavelengths between 220 and 280 nm of the peptides leucine-enkephalin (protonated) and gramicidin A (sodiated). Hydrogen-atom losses and side-chain cleavages were observed in LID experiments. These losses depend on the laser wavelength and lead to the formation of radical ions. The fragmentations of these radicals, which are not observed in CID experiments, were investigated in multi-stage mass spectrometry experiments.     

Specific UV photodissociation of tyrosyl-containing peptides in multistage mass spectrometry

UV photodissociation (UVPD) at 262 nm has been carried out on protonated tyrosyl-containing peptides formed by trypsin digestion of apo-transferrin. Under UVPD, the main event is the fragmentation of the C(alpha)-C(beta) bond of the tyrosyl residues leading to a radical ion 107 Da below the precursor ion. The dissociation rate of this specific cleavage appears to be strongly dependent on the peptide sequence and is more prominent on the singly protonated species than on the doubly protonated state. The fragmentation spectra resulting from collisional activation of the protonated even-electron native peptides and of the odd-electron radical species prepared by UVPD are dominated by y-type backbone cleavages. A comparison of their respective y-ion pattern shows complementarities since the combination of both increases the sequence coverage of the peptide sequence. The specific detection of the neutral loss of 107 Da from peptides witnesses the content of at least one tyrosyl residue and, though preliminary, is proposed as a potential new filtering strategy during protein database searching.     

不同电荷态泛素蛋白离子的193 nm紫外光解离质谱

将193 nm激光与傅里叶变换离子回旋共振(FT-ICR)质谱仪结合, 研究了不同价态的泛素蛋白离子的紫外光解离质谱. 结果表明, 在光解离过程中向分析池内引入适量的碰撞气, 不仅能增加母体离子的裂解率, 也能提高碎片离子的捕获效率. 相对于碰撞辅助解离(CAD)中产生的b和y离子, 紫外光解离(UVPD)方法能够产生更为丰富的不同种类碎片离子. 其中, 对于+11价泛素离子, 蛋白质序列的覆盖率接近80%, 远高于对应的CAD实验结果. 与已往报道不同的是, 裂解覆盖率呈现出较强的电荷相关性. 因此, 如何进一步提高较低电荷态的蛋白离子的解离效率和序列覆盖率还需深入研究.     

Ultraviolet Photodissociation of Carboxylate-Derivatized Peptides in a Quadrupole Ion Trap

The fragmentation patterns obtained by ultraviolet photodissociation (UVPD) and collision-induced dissociation (CID) in a quadrupole ion trap mass spectrometer were compared for peptides modified at their C-termini and at acidic amino acids. Attachment of Alexa Fluor 350 or 7-amino-4-methyl-coumarin chromophores at the C-terminal and acidic residues enhances the UV absorptivity of the peptides and all fragment ions that retain the chromophore, such as the y ions that contain the chromophore-modified C-terminus. Whereas CID results in the formation of the typical array of mainly y-type and a/b-type fragment ions, UVPD produces predominantly a/b-type ions with greatly reduced abundances of y ions. Immonium ions, mostly ones from aromatic or basic amino acids, are also observed in the low m/z range upon UVPD. UVPD of peptides containing two chromophore moieties (with one at the C-terminus and another at an acidic residue) results in even more efficient photodissociation at the expense of the annihilation of almost all diagnostic b and y ions containing the chromophore.     

Gas-Phase Peptide Sulfinyl Radical Ions: Formation and Unimolecular Dissociation

A variety of peptide sulfinyl radical (RSO?) ions with a well-defined radical site at the cysteine side chain were formed at atmospheric pressure (AP), sampled into a mass spectrometer, and investigated via collision-induced dissociation (CID). The radical ion formation was based on AP reactions between oxidative radicals and peptide ions containing single inter-chain disulfide bond or free thiol group generated from nanoelectrospray ionization (nanoESI). The radical induced reactions allowed large flexibility in forming peptide radical ions independent of ion polarity (protonated or deprotonated) or charge state (singly or multiply charged). More than 20 peptide sulfinyl radical ions in either positive or negative ion mode were subjected to low energy collisional activation on a triple-quadrupole/linear ion trap mass spectrometer. The competition between radical- and charge-directed fragmentation pathways was largely affected by the presence of mobile protons. For peptide sulfinyl radical ions with reduced proton mobility (i.e., singly protonated, containing basic amino acid residues), loss of 62?Da (CH₂SO), a radical-initiated dissociation channel, was dominant. For systems with mobile protons, this channel was suppressed, while charge-directed amide bond cleavages were preferred. The polarity of charge was found to significantly alter the radical-initiated dissociation channels, which might be related to the difference in stability of the product ions in different ion charge polarities.     

Combining UV photodissociation with electron transfer for peptide structure analysis

The combination of near‐UV photodissociation with electron transfer and collisional activation provides a new tool for structure investigation of isolated peptide ions and reactive intermediates. Two new types of pulse experiments are reported. In the first one called UV/Vis photodissociation–electron transfer dissociation (UVPD‐ETD), diazirine‐labeled peptide ions are shown to undergo photodissociation in the gas phase to form new covalent bonds, guided by the ion conformation, and the products are analyzed by electron transfer dissociation. In the second experiment, called ETD‐UVPD wherein synthetic labels are not necessary, electron transfer forms new cation–peptide radical chromophores that absorb at 355 nm and undergo specific backbone photodissociation reactions. The new method is applied to distinguish isomeric ions produced by ETD of arginine containing peptides. Copyright © 2015 John Wiley & Sons, Ltd.     

Systematic Comparison of Ultraviolet Photodissociation and Electron Transfer Dissociation for Peptide Anion Characterization

Ultraviolet photodissociation at 193?nm (UVPD) and negative electron transfer dissociation (NETD) were compared to establish their utility for characterizing acidic proteomes with respect to sequence coverage distributions (a measure of product ion signals across the peptide backbone), sequence coverage percentages, backbone cleavage preferences, and fragmentation differences relative to precursor charge state. UVPD yielded significantly more diagnostic information compared with NETD for lower charge states (n????2), but both methods were comparable for higher charged species. While UVPD often generated a more heterogeneous array of sequence-specific products (b-, y-, c-, z-, Y-, d-, and w-type ions in addition to a- and x- type ions), NETD usually created simpler sets of a/x-type ions. LC-MS/UVPD and LC-MS/NETD analysis of protein digests utilizing high pH mobile phases coupled with automated database searching via modified versions of the MassMatrix algorithm was undertaken. UVPD generally outperformed NETD in stand-alone searches due to its ability to efficiently sequence both lower and higher charge states with rapid activation times. However, when combined with traditional positive mode CID, both methods yielded complementary information with significantly increased sequence coverage percentages and unique peptide identifications over that of just CID alone.     

Fragmentation of the tryptophan cluster [Trp9-2H]2- induced by different activation methods

Electrospray ionization (ESI) of tryptophan gives rise to multiply charged, non‐covalent tryptophan cluster anions, [Trp_n–xH]^x?, in a linear ion trap mass spectrometer, as confirmed by high‐resolution experiments performed on a Fourier transform ion cyclotron resonance (FT‐ICR) mass spectrometer. The smallest multiply charged clusters that can be formed in the linear ion trap as a function of charge state are: x = 2, n = 7; x = 3, n = 16; x = 4, n = 31. The fragmentation of the dianionic cluster [Trp₉–2H]^2? was examined via low‐energy collision‐induced dissociation (CID), ultraviolet photodissociation (UVPD) at 266 nm and electron‐induced dissociation (EID) at electron energies ranging from >0 to 30 eV. CID proceeds mostly via charge separation and evaporation of neutral tryptophan. The smallest doubly charged cluster that can be formed via evaporation of neutral tryptophans is [Trp₇–2H]^2?, consistent with the observation of this cluster in the ESI mass spectrum. UVPD gives singly charged tryptophan clusters ranging from n = 2 to n = 9. The latter ion arises from ejection of an electron to give the radical anion cluster, [Trp₉–2H]^?.. The types of gas‐phase EID reactions observed are dependent on the energy of the electrons. Loss of neutral tryptophan is an important channel at lower energies, with the smallest doubly charged ion, [Trp₇–2H]^2?, being observed at 19.8 eV. Coulomb explosion starts to occur at 19.8 eV to form the singly charged cluster ions [Trp_x–H]^? (x = 1–8) via highly asymmetric fission. At 21.8 eV a small amount of [Trp₂–H–NH₃]^? is observed. Thus CID, UVPD and EID are complementary techniques for the study of the fragmentation reactions of cluster ions. Copyright © 2010 John Wiley & Sons, Ltd.     

Quantum yield for hydrogen atom formation from H2O2 photolysis in the range 193–240 nm

Photodissociation processes of H₂O₂ in the range 193–240 nm have been studied by pulsed laser photolysis and laser‐induced fluorescence detection of H atom fragments at 121.56 nm. The quantum yield values for H atom formation at 295 ± 2 K have been determined to be 0.20 ± 0.03, 0.038 ± 0.008, 0.029 ± 0.003, 0.015 ± 0.006, 0.007 ± 0.002 at 193, 207, 210, 220, and 230 nm, respectively. At 240 nm, only the upper limit value of <0.002 has been obtained. © 2005 Wiley Periodicals, Inc. Int J Chem Kinet 37: 751–754, 2005     

Gas-phase fragmentation studies of cyclic oligo-β-(1→6)-D-glucosamines by electrospray ionization mass spectrometry using a hybrid high-resolution mass spectrometer

Positive and negative ion high-resolution electrospray ionization mass spectra (MS and MS₂) of cyclooligo-β-(1→6)-D-glucosamines and cyclooligo-β-(1→6)-N-acetyl-D-glucosamines were acquired and interpret. It was shown that the cleavages of glycosidic bonds are the main processes in the decay of protonated and metallated molecules. In addition, elimination of the water molecules (and ammonia for cyclooligo-β-(1→6)-D-glucosamines) was observed along with other processes including the unknown skeletal rearrangement. A primary fragmentation of the negatively charged ions (deprotonated molecules) differed from that of the positively charged ones.

     

Near-UV Photodissociation of Tryptic Peptide Cation Radicals. Scope and Effects of Amino Acid Residues and Radical Sites

Peptide cation-radical fragment ions of the z-type, [^●AXAR⁺], [^●AXAK⁺], and [^●XAR⁺], where X = A, C, D, E, F, G, H, K, L, M, N, P, Y, and W, were generated by electron transfer dissociation of peptide dications and investigated by MS³-near-ultraviolet photodissociation (UVPD) at 355 nm. Laser-pulse dependence measurements indicated that the ion populations were homogeneous for most X residues except phenylalanine. UVPD resulted in dissociations of backbone CO─NH bonds that were accompanied by hydrogen atom transfer, producing fragment ions of the [y_n]⁺ type. Compared with collision-induced dissociation, UVPD yielded less side-chain dissociations even for residues that are sensitive to radical-induced side-chain bond cleavages. The backbone dissociations are triggered by transitions to second (B) excited electronic states in the peptide ion R-CH^●-CONH- chromophores that are resonant with the 355-nm photon energy. Electron promotion increases the polarity of the B excited states, R-CH⁺-C^●(O^–)NH-, and steers the reaction to proceed by transfer of protons from proximate acidic C_α and amide nitrogen positions.

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Graphical Abstract ?

     

Charge Transfer Dissociation (CTD) Mass Spectrometry of Peptide Cations Using Kiloelectronvolt Helium Cations

A kiloelectronvolt beam of helium ions is used to ionize and fragment precursor peptide ions starting in the 1+ charge state. The electron affinity of helium cations (24.6 eV) exceeds the ionization potential of protonated peptides and can therefore be used to abstract an electron from—or charge exchange with—the isolated precursor ions. Kiloelectronvolt energies are used, (1) to overcome the Coulombic repulsion barrier between the cationic reactants, (2) to overcome ion-defocussing effects in the ion trap, and (3) to provide additional activation energy. Charge transfer dissociation (CTD) of the [M+H]⁺ precursor of Substance P gives product ions such as [M+H]^2+? and a dominant series of a ions in both the 1+ and 2+ charge states. These observations, along with the less-abundant a + 1 ions, are consistent with ultraviolet photodissociation (UVPD) results of others and indicate that C–C_α cleavages are possible through charge exchange with helium ions. Although the efficiencies and timescale of CTD are not yet suitable for on-line chromatography, this new approach to ion activation provides an additional potential tool for the interrogation of gas phase ions. Graphical Abstract

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Influence of wavelength,irradiance, and the buffer gas pressure on high irradiance laser ablation and ionization source coupled with an orthogonal Time of Flight Mass Spectrometer

Influence of laser wavelength, laser irradiance and the buffer gas pressure were studied in high irradiance laser ablation and ionization source coupled with an orthogonal time-of-flight mass spectrometer. Collisional cooling effects of energetic plasma ions were proved to vary significantly with the elemental mass number. Effective dissociation of interferential polyatomic ions in the ion source, resulting from collision and from high laser irradiance, was verified. Investigation of relative sensitivity coefficients (RSC) of different elements performed on a steel standard GBW01396, which was ablated at 1064 nm, 532 nm, 355 nm, and 266 nm, has demonstrated that the thermal ablation mechanism could play a critical role with the first three wavelengths, while 266 nm induces non-thermal ablation principally. Experimental results also indicated that there is no evident discrepancy for most metal elements on RSCs and LODs among four wavelengths at high irradiance, except that high boiling point elements like Nb, Mo, and W have higher RSCs at higher irradiance regions of 1064 nm, 532 nm, and 355 nm due to thermal ablation. A geological standard and a garnet stone were also used in the experiment subsequently, and their RSCs and LODs for metal elements show nonsignificant dependence on wavelength at designated irradiances. All results reveal that relatively uniform sensitivity can be achieved at any wavelength for metal elements in the solids used in our experiments at an appropriate irradiance for the low pressure high irradiance laser ablation and ionization source.     

Comparison of MS/MS Methods for Characterization of DNA/Cisplatin Adducts

The development of activation/dissociation techniques such as ultraviolet photodissociation (UVPD), infrared multiphoton dissociation (IRMPD), and electron transfer dissociation (ETD) as alternatives to collision induced dissociation (CID) has extended the range of strategies for characterizing biologically relevant molecules. Here, we describe a comprehensive comparison of CID, IRMPD, UVPD, ETD, and hybrid processes termed ETcaD and ET-IRMPD (and analogous hybrid methods in the negative mode NETcaD and NET-IRMPD) for generating sequence-specific fragment ions and allowing adduction sites to be pinpointed for DNA/cisplatin adducts. Among the six MS/MS methods, the numerous products generated by the IRMPD and UVPD techniques resulted in the most specific and extensive backbone cleavages. We conclude that IRMPD and UVPD methods generally offer the best characteristics for pinpointing the cisplatin adduction sites in the fragment-rich spectra.      

Coulomb explosion of ammonia clusters induced by intense nanosecond laser at 532 and 1064 nm: wavelength dependence of the multicharged nitrogen ions

The Coulomb explosion of ammonia clusters induced by nanosecond laser field with intensity in the range of 10(10)-10(12) W cm(-2) and wavelength of 532 and 1064 nm has been studied. N2+ and N3+ ions are the main multicharged ions at 532 nm, while He-like N5+ ion is the domain multicharged ion at 1064 nm.     

Electron-impact induced fragmentation of substituted pyrazolone azomethine dyes

The mass spectra of 18 substituted 1-(p-R₂-phyeyl)-3-R₃-4-(p-R₁-phenylimino)-2-pyrazolin-5-ones have been obtained. The major cleavages under electron bombardment take place in the pyrazoline nucleus, producing four major fragment ions whose abundance is related primarily to the electronic properties of R₁. These ions appear to be produced from the molecular ion via an intermediate formed by the loss of CO. In most instances metastable ions are observed for the overall decomposition of the molecular ion to the four major fragment ions. A mechanism is proposed for these cleavages.     

Direct Identification of Tyrosine Sulfation by using Ultraviolet Photodissociation Mass Spectrometry

Sulfation is a common post-translational modification of tyrosine residues in eukaryotes; however, detection using traditional liquid chromatography-mass spectrometry (LC-MS) methods is challenging based on poor ionization efficiency in the positive ion mode and facile neutral loss upon collisional activation. In the present study, 193 nm ultraviolet photodissociation (UVPD) is applied to sulfopeptide anions to generate diagnostic sequence ions, which do not undergo appreciable neutral loss of sulfate even using higher energy photoirradiation parameters. At the same time, neutral loss of SO₃ is observed from the precursor and charge-reduced precursor ions, a spectral feature that is useful for differentiating tyrosine sulfation from the nominally isobaric tyrosine phosphorylation. LC-MS detection limits for UVPD analysis in the negative mode were determined to be around 100 fmol for three sulfated peptides, caerulein, cionin, and leu-enkephalin. The LC-UVPD-MS method was applied for analysis of bovine fibrinogen, and its key sulfated peptide was confidently identified.