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1.
Self-assembled monolayers (SAMs) of omega-substituted biphenylthiolates (omega-MBP) on gold were characterized by spectral ellipsometry, X-ray photoelectron spectroscopy (XPS), infrared reflection absorption spectroscopy (IRRAS), and vibrational sum frequency generation spectroscopy (VSFG). The vibrational studies of the SAMs were supported by an ab initio frequency analysis at HF/6-31G and BP86/6-31G levels, yielding an assignment of all relevant spectral features in the range from 3500 to 1200 cm(-1). We were able to demonstrate that hydroxy-terminated MBP (HMBP) SAMs are basically featureless in the range of the CH stretching vibrations. Accordingly, the adsorption of a SAM of octadecyltrichlorosilane (OTS) on top of this model surface could be studied. A red shift of the C-O stretching vibration from 1281 to 1264 cm(-1) was observed during the chemisorption of OTS, thus allowing for a quantification of the number of OTS molecules involved in surface binding of OTS, which was found to be about 26% on average.  相似文献   

2.
Fourier transform infrared spectroscopic (FTIR) interrogation of biological tissues in real time has largely been a challenging proposition because of the strong absorption of mid-infrared light in water filled tissues. To enable sampling of tissues they must be sectioned and dried, which has time and resource implications. FTIR of touch imprint cytology (TIC) has been proposed to circumvent this problem. TIC is a well known histopathological method of rapidly analysing biological tissues. In this article we demonstrate the ability of FTIR of TIC to provide detailed spectra which can be used to differentiate various tissue pathologies. FTIR spectral profiles of TIC of lymph node and thyroid tissues differ visually when compared with TIC spectra of parathyroid tissue. The lymph node showed strong lipid spectral peaks at 1166cm(-1) and 1380cm(-1) including a very strong carbonyl-ester band at 1748cm(-1), and a strong methylene bending band (scissoring, at 1464cm(-1)). Smaller intensity protein peaks at 1547cm(-1) and 1659cm(-1) were also seen. The thyroid spectra, in addition to evident strong protein peaks at 1547cm(-1) and 1659cm(-1), also demonstrated possible nucleic acid signals at 1079cm(-1) and 1244cm(-1). The C-OH peak at 1037cm(-1) was attributed to carbohydrate signals. Parathyroid adenoma showed a marginal shift to lower wavenumbers with decreased amide I and II peak intensities when compared to hyperplasia. Nucleic acid peak positions at 1079cm(-1) and 1244cm(-1) were of higher intensity in adenomas compared to hyperplastic glands possibly demonstrating an increase in cell proliferation and growth. This study demonstrates the feasibility of cytoimprint FTIR for the intraoperative diagnosis of tissue during surgical neck exploration for the management of hyperparathyroidism. There is potential for the application of the technique in sentinel lymph node biopsy diagnosis and tumour margin evaluation.  相似文献   

3.
Femtosecond time-resolved infrared spectroscopy was used to study the vibrational response of riboflavin in DMSO to photoexcitation at 387 nm. Vibrational cooling in the excited electronic state is observed and characterized by a time constant of 4.0 +/- 0.1 ps. Its characteristic pattern of negative and positive IR difference signals allows the identification and determination of excited-state vibrational frequencies of riboflavin in the spectral region between 1100 and 1740 cm (-1). Density functional theory (B3LYP), Hartree-Fock (HF) and configuration interaction singles (CIS) methods were employed to calculate the vibrational spectra of the electronic ground state and the first singlet excited pipi* state as well as respective electronic energies, structural parameters, electronic dipole moments and intrinsic force constants. The harmonic frequencies of the S 1 excited state calculated by the CIS method are in satisfactory agreement with the observed band positions. There is a clear correspondence between computed ground- and excited-state vibrations. Major changes upon photoexcitation include the loss of the double bond between the C4a and N5 atoms, reflected in a downshift of related vibrations in the spectral region from 1450 to 1720 cm (-1). Furthermore, the vibrational analysis reveals intra- and intermolecular hydrogen bonding of the riboflavin chromophore.  相似文献   

4.
The high resolution absorption spectrum of methane has been recorded at liquid nitrogen temperature by direct absorption spectroscopy between 1.30 and 1.70 microm (5850-7700 cm(-1)) using a newly developed cryogenic cell and a series of DFB diode lasers. The investigated spectral range includes part of the tetradecad and the full icosad regions for which only very partial theoretical analysis are available. The analysis of the low temperature spectrum will benefit from the reduction of the rotational congestion and from the narrowing by a factor of 2 of the Doppler linewidth allowing the resolution of a number of multiplets. Moreover, the energy value and rotational assignment of the angular momentum J of the lower state of a given transition can be obtained from the temperature variation of its line intensity. This procedure is illustrated in selected spectral regions by a continuous monitoring of the spectrum during the cell cool-down to 77 K, the temperature value being calculated at each instant from the measured Doppler linewidth. A short movie showing the considerable change of a spectrum during cool-down is attached as Supplementary Material. The method applied to a 30 cm(-1) section of the tetradecad spectrum around 6110 cm(-1) has allowed an unambiguous determination of the J values of part of the observed transitions.  相似文献   

5.
Autoclaving was used to manipulate nutrient utilization and availability. The objectives of this study were to characterize any changes of the functional groups mainly associated with lipid structure in flaxseed (Linum usitatissimum, cv. Vimy), that occurred on a molecular level during the treatment process using infrared Fourier transform molecular spectroscopy. The parameters included lipid CH(3) asymmetric (ca. 2959 cm(-1)), CH(2) asymmetric (ca. 2928 cm(-1)), CH(3) symmetric (ca. 2871 cm(-1)) and CH(2) symmetric (ca. 2954 cm(-1)) functional groups, lipid carbonyl CO ester group (ca. 1745 cm(-1)), lipid unsaturation group (CH attached to CC) (ca. 3010 cm(-1)) as well as their ratios. Hierarchical cluster analysis (CLA) and principal components analysis (PCA) were conducted to identify molecular spectral differences. Flaxseed samples were kept raw for the control or autoclaved in batches at 120°C for 20, 40 or 60 min for treatments 1, 2 and 3, respectively. Molecular spectral analysis of lipid functional group ratios showed a significant decrease (P<0.05) in the CH(2) asymmetric to CH(3) asymmetric stretching band peak intensity ratios for the flaxseed. There were linear and quadratic effects (P<0.05) of the treatment time from 0, 20, 40 and 60 min on the ratios of the CH(2) asymmetric to CH(3) asymmetric stretching vibration intensity. Autoclaving had no significant effect (P>0.05) on lipid carbonyl CO ester group and lipid unsaturation group (CH attached to CC) (with average spectral peak area intensities of 138.3 and 68.8 IR intensity units, respectively). Multivariate molecular spectral analyses, CLA and PCA, were unable to make distinctions between the different treatment original spectra at the CH(3) and CH(2) asymmetric and symmetric region (ca. 2988-2790 cm(-1)). The results indicated that autoclaving had an impact to the mid-infrared molecular spectrum of flaxseed to identify heat-induced changes in lipid conformation. A future study is needed to quantify the relationship between lipid molecular structure changes and functionality/availability.  相似文献   

6.
A method has been developed for Fourier transform infrared (FTIR) spectroscopy determination of Propamocarb in emulsifiable pesticide concentrate formulations. Five microliter sample was directly injected without any pretreatment in a CHCl3 stream at 2 mL min(-1) into a closed system and the FTIR spectra of sample and standard solutions were obtained using a nominal resolution of 4 cm(-1) from 4000 to 900 cm(-1) spectral region and accumulating 2 scans per spectrum. Propamocarb determination was based on the measurement of flow injection analysis (FIA) recording height established from FTIR peak area measurements from 1713 to 1703 cm(-1) corrected using a baseline defined at 2000 cm(-1). The concentration of Propamocarb in samples was calculated by interpolation in an external calibration line obtained from several injections of 2 microL of a 47% (w/v) standard solution into the CHCl3 closed system. This procedure provided a limit of detection of 0.8% (w/v) in the original sample, a sensitivity of 0.3190 absorbance units mL mg(-1) for a path length of 0.11 mm and a relative standard deviation of 0.2% for five independent measurements at 0.74 mg mL(-1) concentration level. The maximum sampling frequency of the whole procedure was 34 h(-1) and the waste generation was reduced to only 2 mL of CHCl3 solution per sample and additional 2 mL for the whole calibration line.  相似文献   

7.
By using a high-resolution infrared (IR) laser to prepare propyne (C(3)H(4)) in selected rotational levels of the excited nu(1) (acetylenic C-H stretching) vibration mode prior to vacuum ultraviolet (VUV) laser pulsed field ionization-photoelectron (PFI-PE) measurements, we have obtained rotationally resolved VUV-PFI-PE spectra for the C(3)H(4) (+)(X (2)E(32,12),nu(1) (+)=1) band. The analysis of these PFI-PE spectra leads to the determination of the spin-orbit constant of A=-13.0+/-0.2 cm(-1) for the C(3)H(4) (+)(X (2)E(32,12),nu(1) (+)=1) state. Using this A constant and the relative rotationally selected and resolved state-to-state photoionization cross sections thus measured, we have obtained an excellent simulation for the VUV-PFI-PE origin band of C(3)H(4) (+)(X (2)E(32,12)), yielding a value of 83 619.0+/-1.0 cm(-1) (10.367 44+/-0.000 12 eV) for the adiabatic ionization energy of C(3)H(4) [IE(C(3)H(4))]. The present two-color IR-VUV-PFI-PE study has also made possible the determination of the C-H stretching frequencies nu(1) (+)=3217.1+/-0.2 cm(-1) for C(3)H(4) (+)(X (2)E(32,12)). The spectral assignment and simulation were guided by high-level ab initio calculations on the IE(C(3)H(4)), Franck-Condon factors for photoionization transitions, and rotational constants and vibrational frequencies for C(3)H(4) (+).  相似文献   

8.
9.
Femtosecond coherence spectroscopy is used to probe the low-frequency (20-200 cm(-1)) vibrational modes of heme proteins in solution. Horseradish peroxidase (HRP), myoglobin (Mb), and Campylobacter jejuni globin (Cgb) are compared and significant differences in the coherence spectra are revealed. It is concluded that hydrogen bonding and ligand charge do not strongly affect the low-frequency coherence spectra and that protein-specific deformations of the heme group lower its symmetry and control the relative spectral intensities. Such deformations potentially provide a means for proteins to tune heme reaction coordinates, so that they can perform a broad array of specific functions. Native HRP displays complex spectral behavior above approximately 50 cm(-1) and very weak activity below approximately 50 cm(-1). Binding of the substrate analog, benzhydroxamic acid, leads to distinct changes in the coherence and Raman spectra of HRP that are consistent with the stabilization of a heme water ligand. The CN derivatives of the three proteins are studied to make comparisons under conditions of uniform heme coordination and spin-state. MbCN is dominated by a doming mode near 40 cm(-1), while HRPCN displays a strong oscillation at higher frequency (96 cm(-1)) that can be correlated with the saddling distortion observed in the X-ray structure. In contrast, CgbCN displays low-frequency coherence spectra that contain strong modes near 30 and 80 cm(-1), probably associated with a combination of heme doming and ruffling. HRPNO displays a strong doming mode near 40 cm(-1) that is activated by photolysis. The damping of the coherent motions is significantly reduced when the heme is shielded from solvent fluctuations by the protein material and reduced still further when T approximately < 50 K, as pure dephasing processes due to the protein-solvent phonon bath are frozen out.  相似文献   

10.
The modification of kaolinite surfaces through mechanochemical treatment has been studied using a combination of mid-IR and near-IR spectroscopy. Kaolinite hydroxyls were lost after 10 h of grinding as evidenced by the decrease in intensity of the OH stretching vibrations at 3695 and 3619 cm(-1) and the deformation modes at 937 and 915 cm(-1). Concomitantly an increase in the hydroxyl-stretching vibrations of water is observed. The mechanochemical activation (dry grinding) causes destruction in the crystal structure of kaolinite by the rupture of the O-H, Al-OH, Al-O-Si and Si-O bonds. Evidence of this destruction may be followed using near-IR spectroscopy. Two intense bands are observed in the spectral region of the first overtone of the hydroxyl-stretching vibration at 7065 and 7163 cm(-1). These two bands decrease in intensity with mechanochemical treatment and two new bands are observed at 6842 and 6978 cm(-1) assigned to the first overtone of the hydroxyl-stretching band of water. Concomitantly the water combination bands observed at 5238 and 5161 cm(-1) increase in intensity with mechanochemical treatment. The destruction of the kaolinite surface may be also followed by the loss of intensity of the two hydroxyl combination bands at 4526 and 4623 cm(-1). Infrared spectroscopy shows that the kaolinite surface has been modified by the removal of the kaolinite hydroxyls and their replacement with water adsorbed on the kaolinite surface. NIR spectroscopy enables the determination of the optimum time for grinding of the kaolinite. Further NIR allows the possibility of continual on-line analysis of the mechanochemical treatment of kaolinite.  相似文献   

11.
Simpson JV  Oshokoya O  Wagner N  Liu J  JiJi RD 《The Analyst》2011,136(6):1239-1247
The application of UV excitation sources coupled with resonance Raman have the potential to offer information unavailable with the current inventory of commonly used structural techniques including X-ray, NMR and IR analysis. However, for ultraviolet resonance Raman (UVRR) spectroscopy to become a mainstream method for the determination of protein secondary structure content and monitoring protein dynamics, the application of multivariate data analysis methodologies must be made routine. Typically, the application of higher order data analysis methods requires robust pre-processing methods in order to standardize the data arrays. The application of such methods can be problematic in UVRR datasets due to spectral shifts arising from day-to-day fluctuations in the instrument response. Additionally, the non-linear increases in spectral resolution in wavenumbers (increasing spectral data points for the same spectral region) that results from increasing excitation wavelengths can make the alignment of multi-excitation datasets problematic. Last, a uniform and standardized methodology for the subtraction of the water band has also been a systematic issue for multivariate data analysis as the water band overlaps the amide I mode. Here we present a two-pronged preprocessing approach using correlation optimized warping (COW) to alleviate spectra-to-spectra and day-to-day alignment errors coupled with a method whereby the relative intensity of the water band is determined through a least-squares determination of the signal intensity between 1750 and 1900 cm(-1) to make complex multi-excitation datasets more homogeneous and usable with multivariate analysis methods.  相似文献   

12.
While many of the characteristics of the cosmic unidentified infrared (UIR) emission bands observed for interstellar and circumstellar sources within the Milky Way and other galaxies, can be best attributed to vibrational modes of the variants of the molecular family known as polycyclic aromatic hydrocarbons (PAH), there are open questions that need to be resolved. Among them is the observed strength of the 6.2 micron (1600 cm(-1)) band relative to other strong bands, and the generally low strength for measurements in the laboratory of the 1600 cm(-1) skeletal vibration band of many specific neutral PAH molecules. Also, experiments involving laser excitation of some gas phase neutral PAH species while producing long lifetime state emission in the 3.3 micron (3000 cm(-1)) spectral region, do not result in significant 6.2 micron (1600 cm(-1)) emission. A potentially important variant of the neutral PAH species, namely hydrogenated-PAH (H(N)-PAH) which exhibit intriguing spectral correlation with interstellar and circumstellar infrared emission and the 2175 A extinction feature, may be a factor affecting the strength of 6.2 micron emission. These species are hybrids of aromatic and cycloalkane structures. Laboratory infrared absorption spectroscopy augmented by density function theory (DFT) computations of selected partially hydrogenated-PAH molecules, demonstrates enhanced 6.2 micron (1600 cm(-1)) region skeletal vibration mode strength for these molecules relative to the normal PAH form. This along with other factors such as ionization or the incorporation of nitrogen or oxygen atoms could be a reason for the strength of the cosmic 6.2 micron (1600 cm(-1)) feature.  相似文献   

13.
Vibrational spectral measurements, namely, infrared (4000-400 cm(-1)) and Raman (3500-50 cm(-1)) spectra have been made for 2-Bromohydroquinone. Optimized geometrical structures, harmonic vibrational frequencies and intensities have been computed by the ab initio (RHF), B-based (BLYP, BP86) and B3-based (B3P86, B3LYP, B3PW91) density functional methods using 6-31G(d) basis set. A complete assignment of the observed spectra has been proposed. Coupling of vibrations has been determined by calculating potential energy distributions (PEDs) at BP86/6-31G(d) level of theory. In the computed equilibrium geometries by all the levels, the bond lengths and bond angles show changes in the neighborhood of Bromine. Similarly, the vibrational spectra exhibit some marked spectral features unlike in hydroquinone and phenol. On the other hand, the infrared spectrum shows a clear evidence of O-H...O bonding near 3200 cm(-1) as in hydroquinone. Evaluation of the theoretical methods demonstrates that all the levels but the RHF have reproduced frequencies fairly accurately in the 2000-500 cm(-1); below 500 cm(-1) the RHF has performed reasonably well.  相似文献   

14.
Tuning properties of long-wavelength VCSELs have been studied experimentally, for the first time to our knowledge. Injection current and temperature tuning rates of two VCSELs operating near 1,512 and 1,577 nm have been measured using a Fabry-Perot etalon with free spectral range 0.056 cm(-1). A 100-Hz saw-tooth modulation with depths of modulation of approximately 10% or less was superimposed on a direct injection current (dc bias) to tune lasers in narrow spectral intervals (0.3-1.2 cm(-1)) around a central frequency set by the dc bias. The lasers have been found to be capable of being tuned faster at higher levels of dc bias. The enhancement factors were up to approximately 2 and approximately 3 for the 1,512- and 1,577-nm lasers, respectively, as compared with their tuning rates measured at the levels of the dc bias close to the threshold of lasing. A linear dependence between injection current tuning rates and the levels of dc bias has been observed. Temperature tuning coefficients have been proved to be independent of the laser heat sink temperature and of the dc bias. Frequency tuning curves were approximated with a second-order polynomial. The frequencies of more than 40 absorption lines of CO, CO(2), H(2)O and NH(3) known from spectral databases were compared with the calculated frequencies. The accuracy of the approximation was found to be within 0.2 cm(-1) for spectral intervals up to 38 cm(-1). The dependence of current tuning rates of the VCSELs on dc bias was shown to be taken into account for accurate analysis of absorption line profiles. The results obtained can be used for precise spectroscopic measurements with long-wavelength VCSELs.  相似文献   

15.
Trace amounts of cobalt and nickel in a water sample were quantitatively coprecipitated with scandium hydroxide at pH 8.0-10.5. Because the coprecipitant could be easily dissolved with 1 mol dm(-3) nitric acid, and the presence of up to 10 mg cm(-1) of scandium did not interfere with the graphite-furnace atomic absorption spectrometric determination of cobalt and nickel, the volume of the final solution prepared for the determination could be minimized down to 0.5 cm3. The concentration factor was 400-fold and the detection limits (signal to noise = 2) were 5.0 pg cm(-3) of cobalt and 10.0 pg cm(-3) of nickel in 200 cm3 of the initial sample solution. The 27 diverse ions investigated did not interfere with the determination in at least a 500-fold mass ratio to cobalt or nickel. The proposed method was successfully applied to the determination of trace amounts of cobalt and nickel in river-water samples.  相似文献   

16.
Singh HB  Agnihotri NK  Singh VK 《Talanta》1999,48(3):623-631
A sensitive derivative spectrophotometric method using 1-nitroso-2-naphthol has been developed for determination of trace amounts of cobalt in the presence of a neutral surfactant. Photometric parameters, viz., lambda(max), molar absorption coefficient and analytical sensitivity of the complex formed in micellar media are 420 nm, 3.18x10(4) l mol(-1) cm(-1) and 2.05 ng ml(-1), respectively. Beer's law holds from 0.20 to 3.0 mug ml(-1) of the analyte concentration. The method has a high sensitivity with a detection limit of 1.68 ng ml(-1). A selective determination of cobalt in presence of copper(II) or iron(III) using derivative spectral profiles and without any masking or pre-separation is also reported. Samples of drugs and standard alloys analysed by the proposed method yielded results comparable to those obtained using recommended procedures.  相似文献   

17.
A procedure for the Raman spectra calculation of vitreous and molten silicates was presented in this paper. It includes molecular dynamics MD simulation for the generation of equilibrium configurations, Wilson's GF matrix method for the calculations of eigenfrequencies and corresponding vectors, electro-optical parameters method (EOPM) for the Raman intensity calculations, and the bond polarizability model (BPM) for the determination of polarizability and polarizability derivative. One of the most important characteristics of this procedure is the achievement of the partial Raman spectra of five tetrahedral units, as well as the total spectral envelope. In this paper, the calculation was carried out for the vitreous and molten calcium silicates with different compositions and at various temperatures. It is worthwhile to note that the calculation is based on statistical configurations distribution in the space and so it is not needed to artificially adjust the full width at half maximum (FWHM) of spectra. It was also tested through the good agreement of the calculated spectra with the experimental, including some regularity of spectral properties. According to the calculation, the symmetrical stretching of whole tetrahedral units, to which the stretching of Si-O(nb) bond gives the main contribution to intensity, is proven to be the dominance in the high-frequency range (800-1200 cm(-1)) and the symmetrical bending of Si-O(b)-Si, to which the stretching of Si-O(b) bond exhibits the main contribution, is the dominance in the medium-frequency range (400-700 cm(-1)). As the first theoretical results, the Raman scattering coefficient of each Q(i) was found little change along with the variation of composition and temperature.  相似文献   

18.
The light-dependent reduction of protochlorophyllide, a key step in the synthesis of chlorophyll, is catalyzed by the enzyme protochlorophyllide oxidoreductase (POR) and requires two photons (O. A. Sytina et al., Nature, 2008, 456, 1001-1008). The first photon activates the enzyme-substrate complex, a subsequent second photon initiates the photochemistry by triggering the formation of a catalytic intermediate. These two events are characterized by different spectral changes in the infra-red spectral region. Here, we investigate the vibrational frequencies of the POR-bound and unbound substrate, and product, and thus provide a detailed assignment of the spectral changes in the 1800-1250 cm(-1) region associated with the catalytic conversion of PChlide:NADPH:TyrOH into Chlide:NADP(+):TyrO(-). Fluorescence line narrowed spectra of the POR-bound Pchlide reveal a C=O keto group downshifted by more than 20 cm(-1) to a relatively low vibrational frequency of 1653 cm(-1), as compared to the unbound Pchlide, indicating that binding of the chromophore to the protein occurs via strong hydrogen bond(s). The frequencies of the C=C vibrational modes are consistent with a six-coordinated state of the POR-bound Pchlide, suggesting that there are two coordination interactions between the central Mg atom of the chromophore and protein residues, and/or a water molecule. The frequencies of the C=C vibrational modes of Chlide are consistent with a five-coordinated state, indicating a single interaction between the central Mg atom of the chromophore and a water molecule. Rapid-scan FTIR measurements on the Pchlide:POR:NADPH complex at 4 cm(-1) spectral resolution reveal a new band in the 1670 cm(-1) region. The FTIR spectra of the enzyme activation phase indicate involvement of a nucleotide-binding structural motif, and an increased exposure of the protein to solvent after activation.  相似文献   

19.
Normal co-ordinate analysis has been realised in the crystalline state using a modified Urey-Bradley-Shimanouchi force field combined with an intermolecular potential energy function that includes van der Waals interactions, some electrostatic terms and an explicit hydrogen bond function. The vibrational spectra of the alpha-L-fucose molecule have been recorded in the crystalline state, in the 4000-500 cm(-1) spectral region for the mid-IR spectra, in the 500-100 cm(-1) spectral region for the far-IR spectra, and in the 4000-20 cm(-1) spectral range for Raman spectra. These spectra constitute the experimental support for the establishment of a force field for the molecule in the crystalline state through a normal co-ordinate analysis.  相似文献   

20.
We have developed an experimental setup using the combination of laser optogalvanic detection and a supersonic expansion of excited N2 to record the high resolution spectrum of the (3-1) and (4-2) Herman infrared bands (C" 5Pi(ui)-A' 5Sigma(g)+). We report the first experimental determination of a spin-orbit interval (about 24 cm(-1)) in the C" 5Pi(ui) state of N2 for both the (3-1) and (4-2) vibrational bands as well as the first observation of the v' = 4 vibrational level.  相似文献   

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