Do high-quality C-NMR spectral data really come from journals with high Impact Factors?

Journals span a wide range of quality – one measure among others to express this difference in quality of journals within a certain field of science being their Impact Factors. The simple, but reasonable, expectation that high-quality ¹³C-NMR spectral data would have been published predominantly in high-IF journals needs revision after using a state-of-the-art prediction engine for chemical-shift values and correlating the values obtained with the published values on a per-journal basis. The situation seems to have become more stable during the 1990s as a long-term effect of the widespread application of two-dimensional techniques, which was reversed in the past few years by the immense pressure to publish high-IF work in a very competitive environment.     

Extraction of the Anticancer and Antimicrobial Agent,Prodigiosin, from Vibrio gazogenes PB1 and Its Identification by 1D and 2D NMR

Prodigiosin is a secondary metabolite produced in several species of bacteria. It exhibits antimicrobial and anticancer properties. Methods for the extraction and identification of prodigiosin and their related derivatives from bacterial cultures typically depend on solvent-based extractions followed by NMR spectroscopy. The estuarine bacterium, V. gazogenes PB1, was previously shown to produce prodigiosin. This conclusion, however, was based on analytical data obtained from ultraviolet-visible absorption spectrophotometry and infrared spectroscopy. Complete dependence on these techniques would be considered inadequate for the accurate identification of the various members of the prodiginine family of compounds, which possess very similar chemical structures and near-identical optical properties. In this study, we extracted prodigiosin from a culture of Vibrio gazogenes PB1 cultivated in minimal media, and for the first time, confirmed the synthesis of prodigiosin Vibrio gazogenes PB1 using NMR techniques. The chemical structure was validated by ¹H and ¹³C NMR spectroscopy, and further corroborated by 2D NMR, which included ¹H-¹H-gDQFCOSY, ¹H-¹³C-gHSQC, and ¹H-¹³C-gHMBC, as well as ¹H-¹H-homonuclear decoupling experiments. Based on this data, previous NMR spectral assignments of prodigiosin are reaffirmed and in some cases, corrected. The findings will be particularly relevant for experimental work relating to the use of V. gazogenes PB1 as a host for the synthesis of prodigiosin.     

Identification of the Impurities in Bopu Powder® and Sangrovit® by LC-MS Combined with a Screening Method

Bopu powder^® and Sangrovit^® were developed from Macleaya cordata and are widely used in agriculture and animal husbandry, but their impurities have been rarely reported in the literature. Impurity analysis is of great importance to the quality and safety of veterinary drugs. In this study, high-performance liquid chromatography/quadrupole time-of-flight mass spectrometry (HPLC-Q-TOF-MS) combined with a screening method was used to screen and characterize the impurities in Bopu powder^® and Sangrovit^®. A total of 58 impurities were screened from Bopu powder^® and Sangrovit^® using the screening strategies, of which 39 were identified by their accurate m/z value, characteristic MS/MS data, and fragmentation pathways of references. This established method was used for impurity analysis for the first time and proved to be a useful and rapid tool to screen and identify the impurities of Bopu powder^® and Sangrovit^®, especially for those at trace levels in a complex sample. In addition, this study marks the first comprehensive research into impurities in these two products and has great significance for the systematic detection of impurities in other plant-derived drugs.     

Correlation between the synthetic origin of methamphetamine samples and their 15N and 13C stable isotope ratios

The active ingredient of ecstasy, N-methyl-3,4-methyldioxyphenylisopropylamine (MDMA) can be manufactured by a number of easy routes from simple precursors. We have synthesised 45 samples of MDMA following the five most common routes using N-precursors from 12 different origins and three different precursors for the aromatic moiety. The ¹³C and ¹⁵N contents of both the precursors and the MDMA samples derived therefrom were measured by isotope ratio mass spectrometry coupled to an elemental analyser (EA-IRMS). We show that within-pathway correlation between the ¹⁵N content of the precursor and that of the derived MDMA can be strong but that no general pattern of correlation can be defined. Rather, it is evident that the δ¹⁵N values of MDMA are strongly influenced by a combination of the δ¹⁵N values of the source of nitrogen used, the route by which the MDMA is synthesised, and the experimental conditions employed. Multivariate analysis (PCA) based on the δ¹⁵N values of the synthetic MDMA and of the δ¹⁵N and δ¹³C values of the N-precursors leads to good discrimination between the majority of the reaction conditions tested.     

Convenient Synthesis of Pyrazolo[4′,3′:5,6]pyrano[4,3-c][1,2]oxazoles via Intramolecular Nitrile Oxide Cycloaddition

A simple and efficient synthetic route to the novel 3a,4-dihydro-3H,7H- and 4H,7H-pyrazolo[4′,3′:5,6]pyrano[4,3-c][1,2]oxazole ring systems from 3-(prop-2-en-1-yloxy)- or 3-(prop-2-yn-1-yloxy)-1H-pyrazole-4-carbaldehyde oximes has been developed by employing the intramolecular nitrile oxide cycloaddition (INOC) reaction as the key step. The configuration of intermediate aldoximes was unambiguously determined using NOESY experimental data and comparison of the magnitudes of ¹J_CH coupling constants of the iminyl moiety, which were greater by approximately 13 Hz for the predominant syn isomer. The structures of the obtained heterocyclic products were confirmed by detailed ¹H, ¹³C and ¹⁵N NMR spectroscopic experiments and HRMS measurements.     

Revisiting Y2Si2O7 and Y2SiO5 polymorphic structures by Y MAS-NMR spectroscopy

This paper describes the ⁸⁹Y MAS-NMR spectra for all the established polymorphs of Y₂Si₂O₇ (y, α, β, γ and δ) and Y₂SiO₅ (X1 and X2). The combination of our spectroscopic data with the structural information published up to now from diffraction data permits the revision and correction of mistakes which appear in the literature. Finally, the influence of different structural factors, such as yttrium coordination number and Y-O distances on the ⁸⁹Y NMR isotropic chemical shift is analyzed.     

Simultaneous mixture analysis by using non-linear spectrophotometric data and linear iterative target transformation factor analysis

Non-linear absorption spectral data obtained from ternary mixtures of analytes are analyzed by using a linear model, iterative target transformation factor analysis (ITTFA). The use of transformed original variables is used to correct non-linearities in the original data. Absorbance below a certain limit (k) is described as linear and above this limit as non-linear. The extension of the regressor variables is the squared absorbances above the linear range. The variation of the prediction error as a function of the number of the factors and the k-values were considered and the minimum prediction error was evaluated for reaching to optimum. Except the natural non-negativity constraint the correlation constraint also is used on concentration vector in each iteration of ITTFA algorithm. The reliability of the method is evaluated using model data for ternary mixtures by spectral overlapping and different degrees of non-linearity. Simultaneous spectrophotometric determination of Eu³⁺, UO₂²⁺ and Th⁴⁺ with arsenazo III as chromogenic reagent is used as experimental model systems with non-linearity behavior of Eu³⁺and UO₂²⁺ components. The application to both synthetic and real data sets with different degrees of non-linearity demonstrate the ability of the proposed methodology to obtain better results than original data and ITTFA. The relative standard errors of prediction for proposed method in comparison with using the PLS calibration on original and extended data are nearly smaller.     

High temperature NMR approach of mixtures of rare earth and alkali fluorides: An insight into the local structure

In situ high temperature nuclear magnetic resonance in molten fluoride mixtures gives some structural picture of the complexes existing in the melt, i.e. of their nature and relative proportion. Thanks to the development of a laser heating system associated with a close crucible in boron nitride, we can describe experimentally the evolution of these complexes from the anions and the cations point of view. By ¹⁹F NMR, we have shown the existence of three kinds of fluorine atoms depending on the composition: free fluorine like in pure LiF (non-bonded), bridging fluorine in melts rich in LnF₃ in addition with terminal fluorine singly bonded to one rare earth. Data obtained by NMR spectroscopy are also combined with EXAFS measurements, again thanks to a specific development of the sample holder adapted with molten fluorides and high temperature. This study is a part of our systematic investigation of the different Alk-LnF₃ systems by NMR and EXAFS spectroscopy.     

Studies on the Components of Crude and Processed Fructus Corni by ESI-MS

The components of crude and processed Fructus Corni were investigated by means of electrospray ionization-tandem mass spectrometry（ESI-MSn） technique in the negative ion mode. Compared with those of crude Fructus Corni, the chemical components of the processed Fructus Corni were changed both in quality and in quantity. From the ESI-MS spectra of the crude and processed Fructus Corni, six peaks were selected to establish the characte-ristic ESI-MS peaks. Several factors in the processing procedure were examined. The experimental results demonstrate that the chemical reactions that occurred in the processing procedure can be used for the elucidation of the processed mechanism of Fructus Corni, which is regularly affected by the processing conditions. The present article provides both the chemistry evidence for the understanding of the processing procedure of Fructus Corni and the specific methodology for the research of the processing procedure and quality identification of traditional Chinese medicine.     

Biosynthesis of aspergiolide A, a novel antitumor compound by a marine-derived fungus Aspergillus glaucus via the polyketide pathway

Aspergiolide A, a novel antitumor compound, was produced by a marine-derived filamentous fungus Aspergillus glaucus. The biosynthesis of it was unambiguously determined by feeding experiments using [l-¹³C]sodium acetate, [2-¹³C]sodium acetate, and [1,2-¹³C₂]sodium acetate precursors followed by ¹³C NMR spectroscopic investigation of the isolated products. Analysis of the patterns of ¹³C-enrichment revealed that all 25 carbon atoms in skeleton of aspergiolide A were derived from labeled acetate. And among them, 12 carbon atoms were labeled from the carboxylic group of acetate, while the other 13 carbon atoms were labeled from the methylic group of acetate. Besides, the labeling pattern of [1,2-¹³C₂]sodium acetate feeding experiment demonstrated that 12 intact acetate units were incorporated in aspergiolide A by polyketide pathway.     

Distortion of the tetrahedral coordination of Fe(III) ions stabilized in ZSM-5 zeolite framework

A simple qualitative method to analyze d-d-electronic transitions in cations of the transition elements in oxide matrices is proposed. In the particular case, all the excited states of interest differ only in the electronic configuration of d-orbitals, and the energies of transitions can be computed via the configuration interaction (CI) method restricted by the active space of five cation d-orbitals. An ordinary cluster model that takes into account the first coordination sphere of transition metal ion consisting of the framework of oxygen ions is sufficient for this purpose. The systematic overestimation error of transition energies can be corrected through the empirical factor calculated to fit experimental UV-VIS spectra. The physical meaning of the scaling factor proposed is the dynamic part of electron correlation that remains unaccounted for in the chosen active CI space. The observed d-d-transitions of Fe³⁺ ions in MFI zeolites are analyzed in detail. It is suggested that the specifics of the observed electronic spectra are caused by the distortion of the tetrahedron of oxygen atoms around Fe³⁺. The latter can be easily taken into account when selecting an appropriate Fe³⁺ cluster model in the framework. It is shown that the occurrence of the weak low-frequency band below 21,000 cm^?1 indicates the distortion of the tetrahedral environment around Fe³⁺.     

Chloroscabrolides, chlorinated norcembranoids from the Indonesian soft coral Sinularia sp.

Chemical analysis of the Indonesian soft coral Sinularia sp. (order Alcyonacea, family Alcyoniidae) afforded two known and three new C-4 norcembranoids, named chloroscabrolides A (3) and B (4) and prescabrolide (5). Chloroscabrolide A is a pentacyclic norcembranoid including an unprecedented THF-type ring to connect C-13 and C-15; furthermore, it is only the second chlorinated cembranoid derivative to be reported in the literature. The relative configuration of chloroscabrolide A has been established on the basis of a comparison between experimental ¹³C NMR data and DFT-calculated ¹³C NMR chemical shifts. All the isolated norcembranoids have been evaluated for iNOS protein inhibition.     

Comparative study of the adsorption performance of an active multi-sorbent bed tube (Carbotrap, Carbopack X, Carboxen 569) and a Radiello(®) diffusive sampler for the analysis of VOCs

A simple comparison is made to evaluate the relative performance of active and passive sampling methods for the analysis of volatile organic compounds (VOCs) in ambient air. The active sampling is done through a multi-sorbent bed tube (Carbotrap, Carbopack X, Carboxen 569) created in our laboratory and the passive sampling through the Radiello^® diffusive sampler specified for thermal desorption (filled with Carbograph 4). Daily duplicate samples of multi-sorbent bed tubes were taken during a period of 14 days. During the same period of time, quadruplicate samples of Radiello^® tubes were taken during 3 days, 4 days, 7 days and 14 days. The sampling was carried out indoors during the months of February and March 2010 and outdoors during the month of July 2010 in La Canonja (Tarragona, Spain). The analysis was performed by automatic thermal desorption (ATD) coupled with capillary gas chromatography (GC)/mass spectrometry detector (MSD). The analytical performance of the two sampling approaches was evaluated by describing several quality assurance parameters. The results show that the analytical performances of the methodologies studied are quite similar. They display low limits of detection, good precision, accuracy and desorption efficiency, and low levels of breakthrough for multi-sorbent bed tubes. However, the two monitoring methods produced varying air-borne concentration data for most of the studied compounds, and the Radiello^® samplers generally gave higher results. Sampling rates (Q_k) were determined experimentally, and their values were higher than those supplied by the producer. As the experimental calculation of Q_k values is generally carried out by the suppliers in exposure chambers with only the target compounds present in the air samples, as well as in concentrations dissimilar to those found in ambient air, the use of constant settled Q_k can lead to inaccurate results in complex samples.     

NMR structure determination of (11E)-trinervita-1(14),2,11-triene, a new diterpene from sexual glands of termites

Female alates of Nasutitermes ephratae termites from Guadeloupe and Nasutitermes sp. from Brazil produce a diterpene hydrocarbon of the molecular formula C₂₀H₃₀ as the main component of their tergal gland secretion. Analysis of NMR, IR, and mass spectra of the diterpene led to a structure of (11E)-trinervita-1(14),2,11-triene. Based on a comparison with the published oxygenated trinervitane skeleton from termites we prefer the enantiomer with absolute configurations (4R,7S,8R,15S,16S). The suggested structure is supported by ab initio quantum chemical calculation of ¹H and ¹³C chemical shifts for the optimized geometry of the molecule.     

Quality assessment of Radix Codonopsis by quantitative nuclear magnetic resonance

Radix Codonopsis (Dangshen) is a famous traditional Chinese medicine and has long been used for replenishing energy deficiency, strengthening the immune system, lowering blood pressure and improving appetite in China, Japan and Korea. A highly specific quantification method using ¹H NMR has been developed for the simultaneous determination of novel quaternary ammonium alkaloids codotubulosine A and B, adenosine and 5-(hydroxymethyl)furfural in Radix Codonopsis materials Codonopsis pilosula, C. pilosula var. modesta, C. tangshen, C. tubulosa, C. subglobosa, C. clematidea, C. lanceolota and Campanumoea javanica collected from different regions of China and Taiwan. A solid-phase extraction with C-18 cartridge followed by elution with water can easily remove sugars the major components that may affect the determination of target constituents. In the ¹H NMR spectrum, the signals of N-CH₃ of codotubulosine A (δ 2.75) and B (δ 2.83), H-8 of adenosine (δ 8.15), and CHO signal of 5-(hydroxymethyl)furfural (δ 9.49) are well separated from other signals in [²H₄]methanol. The quantity of the compounds was calculated by the relative ratio of the integral values of the target peaks of each compound to the known amount of internal standard pyrazine. The described NMR method is found to be relatively simple, specific, precise and accurate for the quality control of Radix Codonopsis herbs and no reference compounds are required for calibration curves, in comparison to conventional HPLC methods, for instance.     

The standard and anomalous crystal-field spectra of Eu

The crystal-field (CF) spectra of Eu³⁺ in various inorganic crystalline phases are summarized based on previous investigations. A majority of experimental results can be well interpreted using a standard CF model. However, there are cases in which the spectroscopic properties and fluorescence dynamics of Eu³⁺ cannot be interpreted within the framework of the standard model. A particularly interesting system is Eu³⁺ doped into microcrystals of a charge-unbalanced host such as BaFCl. For Eu³⁺:BaFCl, one Eu³⁺ site (Site I) exhibits normal CF splitting and its energy levels and fluorescence intensity are similar to most other normal systems ever reported. A standard CF fitting has been performed for Site I. However, Eu³⁺ at a distorted site (Site II) is of anomalous fluorescence dynamics and CF splitting which are significantly different from those of Site I. In the metastable state of ⁵D₀, Eu³⁺ ions at Site II also exhibit unusual temperature-dependent lifetime.     

Rapid and novel discrimination and quantification of oleanolic and ursolic acids in complex plant extracts using two-dimensional nuclear magnetic resonance spectroscopy—Comparison with HPLC methods

A novel strategy for NMR analysis of mixtures of oleanolic and ursolic acids that occur in natural products is described. These important phytochemicals have similar structure and their discrimination and quantification is rather difficult. We report herein the combined use of proton-carbon heteronuclear single-quantum coherence (¹H-¹³C HSQC) and proton-carbon heteronuclear multiple-bond correlation (¹H-¹³C HMBC) NMR spectroscopy, in the identification and quantitation of oleanolic acid (OA) and ursolic acid (UA)in plant extracts of the Lamiaceae and Oleaceae family. The combination of ¹H-¹³C HSQC and ¹H-¹³C HMBC techniques allows the connection of the proton and carbon-13 spins across the molecular backbone resulting in the identification and, thus, discrimination of oleanolic and ursolic acid without resorting to physicochemical separation of the components. The quantitative results provided by 2D ¹H-¹³C HSQC NMR data were obtained within a short period of time (∼14 min) and are in excellent agreement with those obtained by HPLC, which support the efficiency of the suggested methodology.     

Computer-assisted structure elucidation of organic compounds III: Automatic fragment generation from13C-NMR spectra

The interpretation of carbon-NMR spectra is mainly based on the comparison with suitable reference data taken from literature. The whole information contents of¹³C-NMR spectra cannot be utilized by manual interpretation. Therefore a network of interactive computer programs has been developed, which simulates the strategy of the spectroscopist in generating structural fragments from the spectral data. The most important knowledge source for this process is a carbon-NMR data base containing some 17,500 spectra. Structural fragments are generated automatically from this data file and assembled by a model builder to complete chemical structures using constraints derived from the spectral data. A comparison of the experimental carbon-NMR spectrum with the estimated ones allows the generation of a sorted hitlist.For part II see: H. Kalchhauser, W. Robien,J. Chem. Inf. Comput. Sci. 1985,25, 103.     

Mononuclear indolyldithiocarbamates of SnCl4 and R2SnCl2: Spectroscopic, thermal characterizations and cytotoxicity assays in vitro

Several mononuclear Sn compounds ranging from mono to tetrakisindoline dithiocarbamates have been synthesized and characterized. Various spectroscopic techniques in combination with microanalytical data lead to the formation of 1:2 and 1:4 (Sn:Naindtc) type complexes depending on the molar ratio of the sodium salt of indolinedithiocarbamate employed. A symmetrical bidentate coordination of the indolinedithiocarbamate has been observed in all the cases as evident by a single sharp band at 1000 cm⁻¹ in their IR spectra. The compounds were found to adopt an octahedral arrangement around the Sn atom as evident from their ¹¹⁹Sn NMR data. The TGA/DSC profile of the ligand exhibits a two-stage thermogram while the complexes decompose in three steps leading to the formation of tin-sulfide as the eventual end product. The in vitro cytotoxicity of butyl and phenyl analogues has been studied against the standard human tumor cell lines. The compounds have also been screened for their antifungal and antibacterial activity against E. coli, S. aureus, C. albicans and A. flavus. The results indicated the compounds to be active.     

Site-specific C content by quantitative isotopic C Nuclear Magnetic Resonance spectrometry: A pilot inter-laboratory study

Isotopic ¹³C NMR spectrometry, which is able to measure intra-molecular ¹³C composition, is of emerging demand because of the new information provided by the ¹³C site-specific content of a given molecule. A systematic evaluation of instrumental behaviour is of importance to envisage isotopic ¹³C NMR as a routine tool. This paper describes the first collaborative study of intra-molecular ¹³C composition by NMR. The main goals of the ring test were to establish intra- and inter-variability of the spectrometer response. Eight instruments with different configuration were retained for the exercise on the basis of a qualification test. Reproducibility at the natural abundance of isotopic ¹³C NMR was then assessed on vanillin from three different origins associated with specific δ¹³C_i profiles. The standard deviation was, on average, between 0.9 and 1.2‰ for intra-variability. The highest standard deviation for inter-variability was 2.1‰. This is significantly higher than the internal precision but could be considered good in respect of a first ring test on a new analytical method. The standard deviation of δ¹³C_i in vanillin was not homogeneous over the eight carbons, with no trend either for the carbon position or for the configuration of the spectrometer. However, since the repeatability for each instrument was satisfactory, correction factors for each carbon in vanillin could be calculated to harmonize the results.