One-Electron Pseudo-Potential Determination of Stable Isomers of the Li*Ar n Excited Clusters: Absorption Spectra

We present pseudo-potential calculations of geometrical structures of stable isomers of LiAr _n clusters with both an electronic ground state and excited states of the lithium atom. The Li atom is perturbed by argon atoms in LiAr _n clusters. Its electronic structure obtained as the eigenfunctions of a single-electron operator describing the electron in the field of a Li⁺Ar _n core, the Li⁺ and Ar atoms are replaced by pseudo-potentials. These pseudo-potentials include core-polarization operators to account for the polarization and correlation of the inert core with the valence Lithium electron [J Chem Phys 116, 1839 1]. The geometry optimization of the ground and excited states of LiAr _n (n = 1–12) clusters is carried out via the Basin-Hopping method of Wales et al. [J Phys Chem 101, 5111 2; J Chem Phys 285, 1368 3]. The geometries of the ground and ionic states of LiAr _n clusters were used to determine the energy of the high excited states of the neutral LiAr _n clusters. The variation of the excited state energies of LiAr _n clusters as a function of the number of argon atoms shows an approximate Rydberg character, corresponding to the picture of an excited electron surrounding an ionic cluster core, is already reached for the 3s state. The result of optical transitions calculations shows that the absorption spectral features are sensitive to isomer structure. It is clearly the case for transitions close to the 2p levels of Li which are distorted by the cluster environment.     

An expert system for the optimization of columns,operating conditions and instrumentation for high-pressure liquid chromatography

Summary Given the mobile and the stationary phase and values for the physical parameters such as temperature and pH, a separation can be optimized by varying the so-calledchromatographic parameters. These include the column dimensions, particle size, operating conditions (e.g. flow rate, attenuation) and instrumentation (e.g. detector cell, time constant). Optimization of the chromatographic parameters implies finding the best possible set of values, which we define as yielding (i) sufficient separation and (ii) sufficient sensitivity in (iii) the shortest possible time. Finding the best possible conditions (the global optimum) is very difficult for chromatographers in practice.An expert system is described that allows chromatographic optimization to be performed for isocratic separations. An initial chromatogram is required to consult the system. In return, the system provides a complete set of chromatographic parameters, which represents the global optimum within the limits set by the required resolution and signal-to-noise ratio specified by the user. The tolerated flow and pressure ranges, the volume of the available detector cells and the time constant of the detection system are constraints during the optimization. A separate module of the system concerns the sample preparation for pharmaceutical formulations in solid dosages and aqueous solutions.Prototype expert systems have been successfully implemented in the expert-system shell Knowledge Craft on a MicroVAX workstation.     

Rational groups and integer-valued characters of Thompson group <Emphasis Type="Italic">Th</Emphasis>

According to the main result of W. Feit and G. M. Seitz (Illinois J Math 33(1):103–131, 1988), the Thompson group Th is non-rational or unmatured group (S. Fujita in Bull Chem Soc Jpn 71:2071–2080, 1998). Using the concept of markaracter tables proposed by S. Fujita (Bull Chem Soc Jpn 71:1587–1596, 1998), we are able to obtain tables of integer-valued characters for finite unmatured groups. In this paper, the integer-valued character for Thompson group is successfully derived for the first time.     

Towards more fair and effective doping tests based on chromatography with mass spectrometric detection

Van Eenoo and Delbeke in Accred Qual Assur (2009) have criticized Faber (in Accred Qual Assur, 2009) for not taking “all factors under consideration when making his claims”. Here, it is detailed that their criticism is based on a misunderstanding of examples that were merely intended to be illustrative. Motivated by this criticism, further discussion is provided that may help in the pursuit of more fair and effective doping tests, here exemplified by chromatography with mass spectrometric detection. Surely, any doping test can only be improved or even optimized if the risks of false positives and false negatives are well defined. This requirement is consistent with a basic principle concerning mathematical approximations (Parlett in “The symmetric eigenvalue problem”, Prentice-Hall, Englewood Cliffs, 1980): apart from just being good, they should be known to be good. Author’s reply to the response on “Regulations in the field of residue and doping analysis...” Papers published in this section do not necessarily reflect the opinion of the Editors, the Editorial Board and the Publisher.     

Spectrophotometric Determination of the Ionization Constants of Aqueous Nitrophenols at Temperatures up to 225 °C

The UV-visible spectra of aqueous o-, m-, and p-nitrophenol were measured as a function of pH at temperatures from 50 to 225 °C at a pressure of 7 MPa. These were used to determine equilibrium constants for the acid ionization reaction of each isomer. The new results were combined with literature data on the ionization of nitrophenols and used for parameter optimization in the thermodynamic model of Marshall and Franck (J. Phys. Chem. Ref. Data 10:295–304, [1981]), to describe the dependence of ionization properties on temperature and pressure. The model yields predictions of the ionization constants for o-, m-, and p-nitrophenol, log ₁₀ K _a, to at least 250 °C and 20 MPa with an estimated uncertainty in log ₁₀ K _a of less than ±0.06.     

Production and Characterization of Polyclonal and Monoclonal Abs Against the RNA-Binding Protein QKI

RNA-binding protein QKI, a member of the Signal Transduction and Activation of RNA family, is found to be essential in the blood vessel development and postnatal myelination in central nervous system (Woo et al., Oncogene 28:1176–1186, 2009; Lu et al., Nucleic Acids Res 31(15):4616–4624, 2003; Bohnsack et al., Genesis 44(2):93–104, 2006). However, its wide expression pattern suggests other fundamental roles in vivo (Kondo et al., Mamm Genome 10(7):662–669, 1999). To facilitate the understanding of QKI function in various systems, we prepared the polyclonal and monoclonal antibodies against QKI. To obtain the antigen, recombinant His-tagged QKI was expressed in Escherichia coli and highly purified by Ni²⁺-chelated column combined with hydrophobic and ion exchange methods. Following three types of immunizations with different adjuvants, including Freund’s, PAGE gel, and nitrocellulose membrane, only the antiserum produced with Freund’s adjuvant is effective for Western blot detection. Several McAb clones are able to recognize both endogenous and over-expressed QKI with high affinity in Western blot and immunofluorescence. The specificity of Ab was validated as weakening, and no specific signals were observed in cells with QKI knocking down. Immunohistochemistry analysis further showed positive staining of QKI in kidney where QKI mRNA was abundantly expressed, ensuring the wide applications of the QKI Abs in the ongoing mechanistic studies.     

Modification of the Pictet–Spengler reaction in the synthesis of fused 2,3-benzodiazocines

A new strategy for the synthesis of the eight-membered heterocyclic skeleton of tetrahydro-quinazolino[3,2-c][2,3]benzodiazocin-15-ones, based on the Pictet–Spengler reaction of 3-amino-2-[2-(3,4-dimethoxyphenyl)ethyl]quinazolin-4(3H)-one with carbonyl compounds in acidic media, is proposed.     

A localized electrons detector for atomic and molecular systems

The local value of the single-particle momentum provides a direct three-dimensional representation of bonding interactions in molecules. It is given exclusively in terms of the electron density and its gradient, and therefore is an ideal localized electrons detector (LED). The results introduced here extend to molecular systems our study of the single-particle local momentum in atomic systems (Bohórquez and Boyd in J Chem Phys 129:024110, 2008; Chem Phys Lett 480:127, 2009). LED is able to clearly identify covalent and hydrogen bonding interactions by depicting distinctive regions around the bond critical points, emerging as a complementary tool in conventional atoms in molecules studies. The local variable we introduce here is an intuitively interpretable 3D electron-pairs locator in atoms and molecules that can be computed either from theoretical or experimentally derived electron densities.     

Initial Experimental Characterization of a New Ultra-High Resolution FTICR Cell with Dynamic Harmonization

A new Fourier transform ion cyclotron resonance (FTICR) cell based on completely new principles of formation of the effective electric potential distribution in Penning type traps, Boldin and Nikolaev (Proceedings of the 58th ASMS Conference, 2010), Boldin and Nikolaev (Rapid Commun Mass Spectrom 25:122–126, 2011) is constructed and tested experimentally. Its operation is based on the concept of electric potential space-averaging via charged particle cyclotron motion. Such an averaging process permits an effective electric force distribution in the entire volume of a cylindrical Penning trap to be equal to its distribution in the field created by hyperbolic electrodes in an ideal Penning trap. The excitation and detection electrodes of this new cell are shaped for generating a quadratic dependence on axial coordinates of an averaged (along cyclotron motion orbit) electric potential at any radius of the cyclotron motion. These electrodes together with the trapping segments form a cylindrical surface like in a conventional cylindrical cell. In excitation mode this cell being elongated behaves almost like an open cylindrical cell of the same length. It is more effective in ion motion harmonization at larger cyclotron radii than a Gabrielse et al.-type (Int J Mass Spectrom Ion Processes 88:319–332, 1989) cylindrical cell with four compensation sections. A mass resolving power of more than twenty millions of reserpine (m/z 609) and more than one million of highly charged BSA molecular ions (m/z 1357) has been obtained in a 7T magnetic field.     

Rearrangement Pathways of the <Emphasis Type="BoldItalic">a</Emphasis><Subscript><Emphasis Type="BoldItalic">4</Emphasis></Subscript> Ion of Protonated YGGFL Characterized by IR Spectroscopy and Modeling

The structure of the a ₄ ion from protonated YGGFL was studied in a quadrupole ion trap mass spectrometer by ‘action’ infrared spectroscopy in the 1000–2000 cm^–1 (‘fingerprint’) range using the CLIO Free Electron Laser. The potential energy surface (PES) of this ion was characterized by detailed molecular dynamics scans and density functional theory calculations exploring a large number of isomers and protonation sites. IR and theory indicate the a ₄ ion population is primarily populated by the rearranged, linear structure proposed recently (Bythell et al., J. Am. Chem. Soc. 2010, 132, 14766). This structure contains an imine group at the N- terminus and an amide group –CO–NH₂ at the C-terminus. Our data also indicate that the originally proposed N-terminally protonated linear structure and macrocyclic structures (Polfer et al., J. Am. Chem. Soc. 2007, 129, 5887) are also present as minor populations. The clear differences between the present and previous IR spectra are discussed in detail. This mixture of gas-phase structures is also in agreement with the ion mobility spectrum published by Clemmer and co-workers recently (J. Phys. Chem. A 2008, 112, 1286). Additionally, the calculated cross-sections for the rearranged structures indicate these correspond to the most abundant (and previously unassigned) feature in Clemmer’s work.     

LC Determination of Adulterated Saffron Prepared by Adding Styles Colored with Some Natural Colorants

A high-performance liquid chromatographic method previously developed (Lozano et al. in J Chromatogr A 830:477–483, 1999) for simultaneous detection, identification and quantification of the secondary metabolites in commercial saffron was extended for the detection of adulterated saffron prepared by adding styles colored with the natural colorants extracted from saffron petals, safflower, madder and red beet. The chromatograms of the methanol-water (50%, v/v) extracts of pure and adulterated saffron were obtained at the assayed wavelengths, 402 (or 254), 260 and 535 (or 440) nm and then by applying two-way analysis of variance (ANOVA) to the obtained data the presence of the styles colored with the colorant of safflower (>14.3%), styles colored with the colorant of madder (>9.1%) and styles colored with the colorant of red beet (>14.3%) in saffron were significantly detected. But the detection of adulterated saffron prepared with the colorant of saffron petals was not successful.     

Robust estimates of the theoretical standard deviation to be used in interlaboratory precision experiments

Interlaboratory experiments often contain results that strongly deviate from other results obtained in the same laboratory under repeatability conditions, or laboratory means that strongly deviate from other laboratory means. In ISO 5725-2 [1] and IUPAC [2], the basic standards for the organisation and analysis of interlaboratory experiments for the determination of precision of a measurement method, outlier tests are performed in order to detect such situations and to finally decide whether these values are retained in the analysis or discarded as outliers. This outlier treatment, which always has a subjective aspect, becomes unnecessary by using robust estimates of the repeatability and reproducibility standard deviation. This paper proposes to use Rousseeuw’s Q _n as an extremely robust and efficient estimate of the standard deviation. Two examples show the performance of the new method.     

Application of Multilinear Gradient Elution for Optimization of Separation of Chlorophenols Using Derringer’s Desirability Function

Multilinear gradient elution was applied for the simultaneous optimization of resolution and analysis times of nine chlorophenols separated by HPLC. The first relationship of ln k versus φ was determined using the isocratic retention time for each analyte. For prediction of gradient retention times of analytes, the fundamental equation of gradient elution was numerically solved. Then a grid search program was used to simulate chromatograms under each new condition. Two different chromatographic goals, analysis time and minimum distance between adjacent peaks, were evaluated simultaneously using Derringer’s desirability function for each chromatogram. The sigmoid function was used to transform the optimization criteria to desirability values. Under optimal conditions, a good agreement was observed between predicted and experimental values of the chromatographic response function when analysis time was less than 40 min.     

The elusive excited states of bithiophene: a CASPT2 detective story

A systematic multi-reference perturbation theory investigation of the excitation energies and oscillator strengths for the lowest excited states of 2,2′-bithiophene unequivocally shows that its optical spectrum is produced by two ¹ B _u states separated from each other by approximately 1 eV. This picture is confirmed by additional calculations with alternative quantum chemical methods. Our findings are in strong contrast with the previous CASPT2 results of Rubio et al. [J Chem Phys 102:3580 (1995) and Chem Phys Chem 4:1308 (2003)], who predicted that the two lowest ¹ B _u states are quasi-degenerate. The methodological reasons responsible for the previous seemingly erroneous assignment of the optical spectrum of bithiophene are identified and explained in terms of unusually large coupling between the ¹ B _u states introduced by dynamical correlation effects. A general discussion of applicable computational techniques is offered aiming at avoiding similar problems for other molecular systems.     

Electrophilic heterocyclization of 4,5-disubstituted 3-allylthio-4<Emphasis Type="Italic">H</Emphasis>-1,2,4-triazoles by the action of halogens

A study was carried out on the regioselectivity of the electrophilic heterocyclization of 4,5-disubstituted 3-allylthio-4H-1,2,4-triazoles by the action of bromine and iodine. Factors affecting the halogenation regioselectivity, namely, the nature of the electrophilic reagent and the presence of lithium perchlorate, were studied. A method was developed to obtain 5,6-dihydro-3H-[1,3]thiazolo[3,2-b]triazolium salts. The structure of these salts was confirmed by spectral methods and chemical transformations.     

Extending the kinetic solution of the classic Michaelis–Menten model of enzyme action

The principal aim of studies of enzyme-mediated reactions has been to provide comparative and quantitative information on enzyme-catalyzed reactions under distinct conditions. The classic Michaelis–Menten model (Biochem Zeit 49:333, 1913) for enzyme kinetic has been widely used to determine important parameters involved in enzyme catalysis, particularly the Michaelis–Menten constant (K _M ) and the maximum velocity of reaction (V _max ). Subsequently, a detailed treatment of the mechanisms of enzyme catalysis was undertaken by Briggs–Haldane (Biochem J 19:338, 1925). These authors proposed the steady-state treatment, since its applicability was constrained to this condition. The present work describes an extending solution of the Michaelis–Menten model without the need for such a steady-state restriction. We provide the first analysis of all of the individual reaction constants calculated analytically. Using this approach, it is possible to accurately predict the results under new experimental conditions and to characterize and optimize industrial processes in the fields of chemical and food engineering, pharmaceuticals and biotechnology.     

New Nordhaus-Gaddum-type results for the Kirchhoff index

Let G be a connected graph. The resistance distance between any two vertices of G is defined as the net effective resistance between them if each edge of G is replaced by a unit resistor. The Kirchhoff index is the sum of resistance distances between all pairs of vertices in G. Zhou and Trinajstić (Chem Phys Lett 455(1–3):120–123, 2008) obtained a Nordhaus-Gaddum-type result for the Kirchhoff index by obtaining lower and upper bounds for the sum of the Kirchhoff index of a graph and its complement. In this paper, by making use of the Cauchy-Schwarz inequality, spectral graph theory and Foster’s formula, we give better lower and upper bounds. In particular, the lower bound turns out to be tight. Furthermore, we establish lower and upper bounds on the product of the Kirchhoff index of a graph and its complement.