Homodesmotic method of determining the O–H bond dissociation energies in phenols

The dissociation energy of the O–H bond has been calculated by the homodesmotic reaction method for phenolic compounds, which are well-known antioxidants, including for natural phenols. Use of moderately complex computational levels, such as B3LYP/6-31G(d), is sufficient for reliably estimating the D(O–H) value for phenols within the homodesmotic approach. The O–H bond dissociation energy for monosubstituted phenols has been calculated, and the additive character of the effect of methyl groups on D(O–H) in methylphenols has been demonstrated: the introduction of a CH₃ group into the aromatic ring decreases the D value by 7.8 kJ/mol (ortho position), 1.8 kJ/mol (meta position), and 7.6 kJ/mol (para position). The O–H bond strength has been calculated for a number of ubiquinols, selenophens, flavonoids, and chromanols. The D(O–H) value recommended for α-tocopherol is 328.0 ± 1.3 kJ/mol.     

Experimental and theoretical study of the dissociation enthalpy of the N–O bond on 2-hydroxypyridine N-oxide: theoretical analysis of the energetics of the N–O bond for hydroxypyrydine N-oxide isomers

The standard (p^∘=0.1 MPa) molar enthalpy of formation of crystalline 2-hydroxypyridine N-oxide was measured, at T=298.15 K, by static bomb calorimetry and the standard molar enthalpy of sublimation, at T=298.15 K, was obtained using Calvet microcalorimetry. These values were used to derive the standard molar enthalpy of formation of 2-hydroxypyridine N-oxide in gaseous phase, and to evaluate the dissociation enthalpy of the N–O bond. Additionally, high-level density functional theory calculations using the B3LYP hybrid exchange-correlation energy functional have been performed for the three isomers of hydroxypyridine N-oxide in order to confirm the experimental trend for the dissociation enthalpy of the (N–O) bond.     

Vibrational phase relaxation of O–H stretch in bulk water: Role of large amplitude angular jumps and negative cross-correlations among the forces on the O–H bond

The ultrafast vibrational phase relaxation of O–H stretch in bulk water is investigated in molecular dynamics simulations. The dephasing time (T₂) of the O–H stretch in bulk water calculated from the frequency fluctuation time correlation function (C_ω(t)) is in the range of 70–80 femtosecond (fs), which is comparable to the characteristic timescale obtained from the vibrational echo peak shift measurements using infrared photon echo [W.P. de Boeij, M.S. Pshenichnikov, D.A. Wiersma, Ann. Rev. Phys. Chem. 49 (1998) 99]. The ultrafast decay of C_ω(t) is found to be responsible for the ultrashort T₂ in bulk water. Careful analysis reveals the following two interesting reasons for the ultrafast decay of C_ω(t). (A) The large amplitude angular jumps of water molecules (within 30–40 fs time duration) provide a large scale contribution to the mean square vibrational frequency fluctuation and gives rise to the rapid spectral diffusion on 100 fs time scale. (B) The projected force, due to all the atoms of the solvent molecules on the oxygen (F_O(t)) and hydrogen (F_H(t)) atom of the O–H bond exhibit a large negative cross-correlation (NCC). We further find that this NCC is partly responsible for a weak, non-Arrhenius temperature dependence of the dephasing rate.     

O–H···C hydrogen bond in the methane–water complex

Quantum chemical calculations were performed at different levels of theory (SCF, DFT, MP2, and CCSD(T)) to determine the geometry and electronic structure of the HOH···CH₄ complex formed by water and methane molecules, in which water is a proton donor and methane carbon (sp³) is an acceptor. The charge distribution on the atoms of the complex was analyzed by the CHelpG method and Hirshfeld population analysis; both methods revealed the transfer of electron charge from methane to water. According to the natural bond orbital (NBO) analysis data, the charge transfer upon complexation is caused by the interaction between the σ orbital of the axial С–H bond of methane directed along the line of the O–H···C hydrogen bridge and the antibonding σ* orbital of the О–H bond of the water molecule. Topological analysis of electron density in the HOH···CH₄ complex by the AIM method showed that the parameters of the critical point of the bond between hydrogen and acceptor (carbon atom) for the O–H···C interaction are typical for Н-bonded systems (the magnitude of electron density at the critical point of the bond, the sign and value of the Laplacian). It was concluded that the intermolecular interaction in the complex can be defined as an Н bond of O–H···σ(С–H) type, whose energy was found to be 0.9 kcal/mol in MP2/aug-cc-pVQZ calculations including the basis set superposition error (BSSE).     

Features of strong O–H⋯O and N–H⋯O hydrogen bond manifestation in vibrational spectra

The work deals with the establishment of the dependence of the vibrational frequencies of strong O–H?O and N–H?O hydrogen bonds for the diagnosing the bonds themselves. To this end, the Raman spectra of a large number of different normal and deutero-substituted crystals characterized by the presence of strong O–H?O and N–H?O bonds are measured and the quantum chemical calculation is performed for one of these compounds. The dependence of the O–H stretching frequency on the O?O distance is constructed differing from that previously known for short O?O contacts. The mechanisms of significant broadening of the O–H vibration band in strong O–H?O hydrogen bonds are considered. Different dependences of the N–H vibrational frequencies in N–H?O bonds are reported and the causes of this diversity are discussed.     

The frequency of the HOH bending fundamental in solids and liquids

A survey has been made of HOH bending frequencies in water-containing solids and liquids, using data from the literature and from the author's laboratory. After the effects of hydrogen bonding and dynamic coupling have been allowed for, HOH bending frequencies are found to be lowered by cation—water interactions. This frequency lowering increases statistically with increasing cation charge and with decreasing cation size.     

Modeling the molecular dynamics of cytochrome C in aqueous and water–methanol environment

One-microsecond molecular dynamics of horse heart cytochrome C was modeled in aqueous and water–methanol environment. It was shown that the coordination bond between Met-80 sulfur and heme iron is broken in water– methanol solution.     

The C–H bond dissociation enthalpies in fused N-heterocyclic compounds

The C–H bond dissociation enthalpies (BDEs) of the 26 N, O, S-containing mono-heterocyclic compounds were evaluated using the composite high-level ab initio methods G3 and G4. The C–H BDEs for 32 heterocyclic compounds were calculated using 8 types of density functional theory (DFT) methods. Comparing with the experimental values, the BMK method gave the lowest root mean square error (RMSE) of 7.2 kJ/mol. Therefore, the C–H BDEs of N-fused-heterocyclic compounds at different positions were investigated by the BMK method. By NBO analysis two linear relationships between the C–H BDEs of quinoline and isoquinoline with natural charges qC/e in molecules and with natural charges qC/e in radicals were found. The substituent effects on C_(α)–H BDEs in N-fused-heterocyclic compounds were also discussed. It was found that there are two linear relationships between the C_(α)–H BDEs of quinoline and isoquinoline derivatives with natural charges qC_(α)/e for the EDGs and CEGs substituents.     

Enthalpic interaction coefficients of NaI–alkanediol pairs in methanol and in water

The dissolution enthalpies of NaI in the mixtures of methanol with 1,2-alkanediols (1,2-propanediol, 1,2-butanediol, 1,2-pentanediol) and with ??,??-alkanediols (1,3-propanediol, 1,4-butanediol, 1,5-pentanediol), as well NaI in the mixtures of water with 1,3-propanediol and 1,2-pentanediol, were determined at 298.15?K. The energetic effect of interactions between the investigated alkanediols and NaI in methanol and in water was calculated using the enthalpic pair interaction coefficients (h _xy ) model. These results along with the other data concerning the NaI?Cnon-electrolyte pairs taken from our earlier reports and from the literature were analyzed with respect to the effect of the non-electrolyte properties on the variations of the h _xy values. The group contributions illustrating the interactions of NaI with selected functional groups in non-electrolyte (alkanediol and alkanol) molecules, namely: CH₂ and OH groups were calculated and discussed.     

Phase diagram studies of methanol–CHF3 and methanol–H2O–CHF3 mixtures

Comprehensive phase diagrams of methanol/CHF₃ and methanol/H₂O/CHF₃ mixtures over the temperature range of 25–100°C and pressure range of atmospheric to 340 atm are reported. Fluoroform is expected to be useful as an alternative to CO₂ for enhancing the fluidity of liquid mixtures due to its high polarity and low viscosity. Therefore, these mixtures will be studied as mobile phases for enhanced-fluidity liquid chromatography and extraction. The phase behavior of methanol/CHF₃ and methanol/H₂O/CHF₃ was compared to that of methanol/CO₂ and methanol/H₂O/CHF₃. Fluoroform is markedly more miscible with methanol or methanol/H₂O than is CO₂. Data for methanol/CHF₃ binary mixtures were also modeled by the Peng–Robinson equation of state. The correlation results showed that the PR equation of state with two temperature-independent binary parameters was capable of representing the experimental data over the entire temperature range with an average relative deviation within 6%.     

Water binding in cryogenic liquids: The H2O…N2 hydrogen bond

Ab initio calculations for the N₂…HOH complex have been carried out to provide spectroscopic parameters to help determine if formation of the complex can plausibly account for the high solubility of water in liquid nitrogen. Basis sets for optimization and energy determination included 6-311 G**//6-311G** and 6-31 + + G//6-31 G* and correlation corrections up to MP4 (SDTQ) were employed. D_e, was found to be 1.2 kcal/mol, in close agreement with the prediction of a simple hydrogen bond model. The dipole moment, IR intensity enhancement, harmonic frequencies, and zero-point energies were also obtained. Parallel calculations for the N₂…HF complex enabled us to validate our procedure by comparison with previous high-accuracy calculations and experiments.     

Thermodynamic characteristics of the adsorption of 1,3,4-oxadiazoles and 1,2,4,5-tetrazines from methanol and water–methanol solutions onto hypercrosslinked polystyrene

Russian Journal of Physical Chemistry A - The thermodynamic characteristics of the adsorption of several 1,3,4-oxadiazoles and 1,2,4,5- tetrazines from methanol and water-methanol solutions onto...     

Vinylation of trialkylamines with acyl- and cyanoacetylenes via C–N bond cleavage in the presence of water

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Calculating the permittivity and polarizability of methanol–water mixtures at 20°C

The static permittivity and polarizability of methanol–water mixtures as functions of composition at 20°C are calculated on the basis of models proposed earlier.     

The nature of the O—O bond in hydroperoxides

Quantum-chemical calculations of the H₂O₂ and F₂ molecules using different computational schemes, basis sets, and procedures for the inclusion of electron correlation were performed. High-resolution X-ray diffraction study of the electron density distribution in the crystals of 2,5-dimethyl-2,5-dihydroperoxyhexane and 2,5-dimethyl-2,5-dihydroperoxyhex-3-yne was carried out. Joint analysis of the results obtained showed that the formally covalent O—O and F—F bonds correspond to a specific type of interatomic interaction. This type is intermediate between the shared and closed-shell interactions (the latter are typical of the ionic systems and van der Waals molecules).     

C–H bond activation in the total syntheses of natural products

The transition metal-mediated C–H bond activation has emerged as a powerful and ideal method for the total syntheses of natural products and pharmaceuticals, and has had a significant impact on synthetic planning and strategy in complex natural products.In this review, we describe selected recent examples of the transition metal-mediated C–H bond activation strategies for the rapid syntheses of natural products.     

Underpinning energetics of lithium bonding and stability in the Li–Pt–Sn system

Within the Li–Pt–Sn system, we examine the electronic structures and Li-binding of LiPtSn₂, Li₂PtSn and Li₃Pt₂Sn₃ with fluorite-related crystal structures. The structures with totally de-intercalated lithium keep the characteristics of the pristine ternary compound with a reduction of the volume. In Li₃Pt₂Sn₃ the binding energies of lithium belonging to three crystallographically inequivalent Wyckoff sites are different and point to distinct activities of de-intercalation concomitant with site-selective bonding magnitudes. The derived potentials are within the range of non-oxide binary and ternary lithium based compounds and indicate the possibility of at least partial delithiation.     

IR spectroscopic study of the hydrogen bond network in the water–3-amino-1-propanol system and its comparison with the spatial network of hydrogen bonds in the water–monoethanolamine system

IR spectroscopy was used to explore the water–3-amino-1-propanol (3AP) system in the range of 400–4000 cm^-1. Based on the stretching vibrations of OH, NH₂ and CH groups and skeletal bending vibrations of 3AP it was concluded that mixed spatial networks are formed in the water–3AP system that predominate at medium 3AP concentrations. The obtained results are similar to the IR spectroscopic data for the water–monoethanolamine system, viz., the networks of both amino alcohols are incorporated into the spatial