Synthesis and crystal structure of diaquabis(nitrato-O,O′)ethanoliron(III) 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane trinitrate

A new complex salt diaquabis[nitrato-O,O′)ethanoliron(III)] 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane trinitrate, [Fe(NO₃)₂(EtOH)(H₂O)₂]⁺ · [H₂(Crypt-222)]²⁺ · (NO ₃ ^? )₃, is synthesized. Its crystal structure has been determined by X-ray diffraction analysis: space group P 2₁/c, a = 14.147 Å, b = 11.443 Å, c = 23.127 Å, β = 103.66°, Z = 4. The structure is solved by a direct method and refined by the full-matrix least-squares method in the anisotropic approximation to R = 0.064 for 5050 independent measured reflections (CAD-4 automated diffractometer, λMoK _α radiation). In the [Fe(NO₃)₂(EtOH)(H₂O)₂]⁺ complex cation, the coordination polyhedron of the Fe³⁺ cation is a distorted pentagonal bipyramid with its base formed by four O atoms of two bidentate NO ₃ ^? ligands, one O atom of the water molecule, and its axial vertices occupied by the O atoms of the EtOH molecule and the second water molecule. The alternating complex cations and NO ₃ ^? anions multiplied by the 2₁ axis are hydrogen-bonded into infinite chains running along the y axis.     

4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane N,N′-dioxide tetrahydrate: Synthesis and crystal structure

N,N′-Substituted 2.2.2-cryptand, 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane N,N′-dioxide, is synthesized by an unusual method. The X-ray diffraction crystal structure of its tetrahydrate (C₁₈H₃₆N₂O₈) · 4H₂O is studied (space group P $\bar 1$ , a = 8.040 Å, b = 11.883 Å, c = 14.451 Å, α = 65.78°, β = 81.10°, γ = 89.12°, Z = 2) by a direct method and refined by the least-squares method in the anisotropic approximation (R = 0.069 for 3244 independent reflections, CAD4 automated diffractometer, λMoK _α radiation). The macrocyclic molecule has exo-exo conformation with the two O atoms at the N atoms directed outside its cavity. A crystal of compound I contains hydrogen bonds formed by all H atoms of all water molecules; these H-bonds link the water molecule into zigzag-like complicated infinite chains.     

Synthesis and structure of a new heterocyclic system – 7,8-dihydroimidazo- [1,2-<Emphasis Type="Italic">c</Emphasis>][1,3]thiazolo[4,5-<Emphasis Type="Italic">e</Emphasis>]pyrimidine

The purpose-directed synthesis of a new heterocyclic system, 7,8-dihydroimidazo[1,2-c][1,3]thia- zolo[4,5-e]pyrimidine has been carried out based on the successive interaction of available 2-(aroyl- aminocyanomethylene)imidazolidines with hydrogen sulfide and triethyl orthoformate with subsequent intramolecular cyclocondensation of the obtained 8-aroylamino-7-thioxo-1,2,3,7-tetrahydroimidazo- [1,2-c]pyrimidines under the action of phosphorus pentasulfide or polyphosphoric acid.     

New photochromic 1,1,3-trimethylspiro[benzo[<Emphasis Type="Italic">e</Emphasis>]indoline-2,3′-[3<Emphasis Type="Italic">H</Emphasis>]-pyrano[3,2-<Emphasis Type="Italic">f</Emphasis>]quinoline]

A new photochromic spiropyran of the benzoindoline series containing the quinoline moiety was synthesized. Its structure was determined by IR and ¹H NMR spectroscopy. The crystal structure of the new compound was established by X-ray diffraction. The photochromic properties of the synthesized spiropyran were investigated.     

Synthesis and antibacterial and antifungal activities of <Emphasis Type="Italic">N</Emphasis>-(tetra-<Emphasis Type="Italic">O</Emphasis>-acetyl-β-<Emphasis Type="SmallCaps">d</Emphasis>-glucopyranosyl)thiosemicarbazones of substituted 4-formylsydnones

Background

Sydnone is a heterocycle that exhibits remarkable pharmacological activities, including antimicrobial, anti-inflammatory, analgesic, antipyretic and antioxidant activities. Thiosemicarbazones are of compounds that contain the –NHCSNHN=C< linkage group and are considerable interest because they exhibit important chemical properties and potentially beneficial biological activities. Similarly, thiosemicarbazones having carbohydrate moieties also exhibit various significant biological activities.

Results

The compounds of 3-formyl-4-phenylsydnones were obtained by Vilsmeyer-Haack’s formylation reaction and were transformed into thiosemicarbazones by condensation reaction with N-(2,3,4,6-tetra-O-acetyl-β-d-glucopyranosyl)thiosemicarbazide. Reaction were performed in the presence glacial acetic acid as catalyst using microwave-assisted heating method. Reaction yields were 43?85 %. The antimicrobial activities of these thiosemicarbazones were screened in vitro by using agar well diffusion and MIC methods. Among these thiosemicarbazones, compounds 4k, 4l, 4m and 4n were more active against all tested bacterial strains, especially against S. epidermidis, B. subtilis and E. coli. The MIC values in these cases are 0.156, 0.156 and 0.313 μg/mL, respectively. All compounds showed weak to moderate antifungal activity against C. albicans and A. niger than nystatin (MIC = 0.156?0.625 μg/mL vs. MIC = 0.078 μg/mL of nystatin), and thiosemicarbazones 4l, 4m and 4n exhibited significant activity with MIC = 0.156 μg/mL. These compounds also had good antifungal activity against F. oxysporum similarly to nystatin (MIC = 0.156 μg/mL). Among the tested compounds having halogen group 4k, 4l, 4m and 4n showed highest activity against three strains of fungal organisms.

Conclusions

In summary, we have developed a clean and efficient methodology for the synthesis of novel thiosemicarbazone derivatives bearing sydnone ring and d-glucose moiety; the heterocyclic and monosaccharide system being connected via ?NH?C(=S)NH?N=C< linker using molecular modification approach. The methodology could be further extended and used for the synthesis of other thiosemicarbazones of biological importance. 4-Formyl-3-arylsydnone N-(2,3,4,6-tetra-O-acetyl-β-d-glucopyranosyl)thiosemicarbazones have been synthesized under microwave-assisted heating conditions. Almost all obtained compounds showed remarkable activities against the tested microorganisms. Among the tested compounds having halogen group 4k, 4l, 4m and 4n showed highest activity against all tested strains of bacterial and fungal organisms.

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Graphical abstract:Synthesis and antibacterial and antifungal activities of N-(tetra-O-acetyl-β-D-glucopyranosyl)thiosemicarbazones of substituted 4-formylsydnones

     

Synthesis of <Emphasis Type="Italic">N</Emphasis>-nitro-<Emphasis Type="Italic">N</Emphasis>′-(trimethylsilyl)carbodiimide

Nitration of N,N′-bis(trimethylsilyl)carbodiimide with N₂O₅ or (NO₂)₂SiF₆ afforded N-nitro-N´-(trimethylsilyl)carbodiimide, the first representative of N-nitro carbodiimides. Its further nitration led to the release of CO₂, which is presumably formed in the course of N,N´-dinitrocarbodiimide decomposition. The reactions of N-nitro-N´-(trimethylsilyl)carbodiimide with nucleophiles take place both at the tri methylsilyl group (for example, with NH₃) to give nitrocyanamide salts and at the carbodiimide C atom (for example, with Et₂NH) to give the corresponding nitroguan idines.     

1,3-Diamino-2-Hydroxypropane-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>′,<Emphasis Type="Italic">N</Emphasis>′-Tetraacetic Acid: Crystal and Molecular Structures

The synthesis, IR spectroscopic study, and X-ray diffraction analysis (CIF file CCDC no. 1574078) are carried out for 1,3-diamino-2-hydroxypropane-N,N,N′,N′-tetraacetic acid (I). The structural units of a crystal of compound I are (H_4.5HPdta)^0.5– anions, (H_5.5HPdta)^0.5+ cations, and molecules of water of crystallization joined by a branched network of hydrogen bonds: strong intermolecular O–H…O and intramolecular N–H…O bonds.     

Synthesis of 20<Emphasis Type="Italic">S</Emphasis>-protopanaxadiol <Emphasis Type="Italic">β</Emphasis>-D-galactopyranosides

20S-Protopanaxadiol (3β,12β,20S-trihydroxydammar-24-ene) 3-, 12-, and 20-O-β-D-galactopyranosides were synthesized for the first time. Condensation of 12β-acetoxy-3β,20S-dihydroxydammar-24-ene (1) and 2,3,4,6-tetra-O-acetyl-α-D-galactopyranosylbromide (α-acetobromogalactose) (2) under Koenigs–Knorr conditions with subsequent removal of the protecting groups resulted in regio- and stereoselective formation of 20S-protopanaxadiol 3-O-β-D-galactopyranoside, an analog of the natural ginsenoside Rh₂. Glycosylation of 12β,20S-dihydroxydammar-24-en-3-one (5) by 2 with subsequent treatment of the reaction products with NaBH₄ in isopropanol and deacetylation with NaOMe gave 20S-protopanaxadiol 12- and 20-O-β-Dgalactopyranosides.     

SBR composites reinforced with <Emphasis Type="Italic">N</Emphasis>-isopropyl-<Emphasis Type="Italic">N</Emphasis>′-phenyl-<Emphasis Type="Italic">P</Emphasis>-phenylenediamine-modified clay

SBR compounds including the N-isopropyl-N’-phenyl-p-phenylenediamine-modified clay(organoclay) were prepared.Effects of modified clay and antioxidant(IPPD) contents on mechanical and rheological properties of SBR composites were studied.FTIR results confirmed that the clay was chemically modified by IPPD and changed into an organoclay.X-ray diffraction(XRD) results confirmed the increase in interlayer distance of the clay due to the insertion of IPPD.Rheological and cure characteristics of SBR compounds were determined using RPA(Rubber Process Analyzer) and rheometer.Scorch time and cure time of SBR compounds decreased with introduction of the organoclay.Mechanical properties and heat aging resistance of the SBR composites were improved significantly by incorporation of the organoclay.     

4,7,13,16,21,24-Hexaoxa-1,10-Diazoniabicyclo[8.8.8]hexacosane Pentaaqua[Bis(nitrato-O,O′)]yttrium(III) Dichloride Nitrate: Synthesis and Crystal Structure

A complex salt, namely, 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane pentaaqua[bis(nitrato-O,O)]yttrium(III) dichloride nitrate [Y(NO₃)₂(H₂O)₅]⁺[H₂(Crypt-222)]²⁺2Cl^–NO^– ₃ (I) was synthesized and structurally characterized by X-ray diffraction analysis (triclinic crystal system, space group P31, a = 8.443(1) Å, c = 28.110(5) Å, Z = 2). The structure was solved by the direct method and refined by the full-matrix least-squares method in the anisotropic approximation to R = 0.072 from 2000 measured reflections (CAD4 automated diffractometer, CuK radiation). The crystal structure of I is highly disordered. All ions are located in crystallographic axes 3 and all but one Cl^– ion are disordered. In the [Y(NO₃)₂(H₂O)₅]⁺ complex cation, the coordination polyhedron of the Y atom (C.N. 9) is a distorted pentagonal bipyramid with two O atoms of two nitrato ligands as two bifurcate vertices and five O atoms of five water molecules as the base.     

Synthesis of water-soluble bis-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">O</Emphasis>-chelate nickel(II) complexes based on new ligands – <Emphasis Type="Italic">P</Emphasis>-pyridyl-containing phospholane oxides

A series of new N,O-hybrid ligands was synthesized by oxidation of pyridyl-substituted phospholanes. These ligands were employed in the first synthesis of water-soluble mononuclear nickel(II) complexes [NiL₂(H₂O)₂](BF₄)₂ and [NiL₂(MeCN)₂](BF₄)₂. Physicochemical properties and crystalline structures of the synthesized compounds were thoroughly studied.     

Crystalline hydrates of calix[4]arene-<Emphasis Type="Italic">para</Emphasis>-sulfonic acid with <Emphasis Type="Italic">n</Emphasis> (<Emphasis Type="Italic">n</Emphasis> = 6–16) water molecules: a structure modeling

The structures of crystalline hydrates of calix[4]arene-para-sulfonic acid with n (n = 6–16) water molecules and the activation barriers to surface proton migration were calculated within the framework of the density functional theory (DFT) using the PBE gradient-corrected functional, the "hard" basis set of projector-augmented waves (PAW), a corresponding pseudopotential, periodic boundary conditions, and the VASP program package. The energies of formation of crystalline hydrates from calix[4]arene-para-sulfonic acid and n water molecules calculated per water molecule are in the range of 0.4–0.9 eV and depend on n. The adsorption energy of water on the surface is in the range of 0.5–0.7 eV. The activation barriers to proton transfer across the surface calculated for the most stable crystal (n = 8) are close to experimental data and depend on the number of superstoihiometric water molecules, being equal to ~0.2 eV provided three superstoihiometric water molecules per surface SO₃H group.     

Preparation and crystal structure of bis(triethylene glycol-<Emphasis Type="Italic">O</Emphasis>,<Emphasis Type="Italic">O</Emphasis>′,<Emphasis Type="Italic">O</Emphasis>′’,<Emphasis Type="Italic">O</Emphasis>‴)manganese(II) dibromide

A new complex, bis(triethylene glycol-O,O′,O′’,O?)manganese(II) dibromide [Mn(TEG)₂]²⁺·2Br^?, was prepared. Its structure was studied by single crystal X-ray diffraction. The complex cation [Mn(TEG)₂]²⁺ is of the host-guest type with two TEG ligands (podands) as hosts. Both TEG ligands are disordered and tetradentate, with all the four oxygen atoms of each ligand participating in the coordination. The Mn²⁺ cation has coordination number 8, and its coordination polyhedron is a distorted bisdisphenoid (trigonal dodecahedron). The geometric parameters (bond lengths, bond and torsion angles) of the complex were determined relatively accurately. In the crystal structure, the ions form infinite thick layers by interionic hydrogen bonds O-H···Br^?.     

Complex formation of magnesium and calcium ions with trimethylenediamine-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>’,<Emphasis Type="Italic">N</Emphasis>’-tetraacetic acid

Stability constants and heat effects of the formation reactions of magnesium and calcium trimethylenediaminetetraacetates at 298.15 K and ionic strength of 0.1, 0.5, and 1.0 (mol/L KNO₃) have been determined by means of potentiometry and calorimetry. Standard thermodynamic parameters (log K⁰, Δ_rG⁰, Δ_rH⁰, and Δ_rS⁰) of the studied equilibriums have been determined.     

Synthesis and crystal structure of bis(μ-periodato-<Emphasis Type="Italic">O,O′,O″</Emphasis>)bis(18-crown-6)dirubidium

A new binuclear complex, bis(μ-periodato-O,O′,O″)bis(18-crown-6)dirubidium [Rb₂(IO₄)₂(18-crown-6)₂] (I), is synthesized. Its crystal structure is studied by single-crystal X-ray diffraction analysis (space group P2₁/n, a = 11.942 Å, b = 8.394 Å, c = 19.664 Å, β = 101.08°, Z = 4, direct method, anisotropic full-matrix least-squares approximation, R = 0.030 for 2823 independent reflections, CAD-4 automated diffractometer, λMoK _α radiation). Complex I is binuclear and centrosymmetric, consisting of two cationic monomers [Rb(18-crown-6)]⁺ of the host-guest type linked through two tridentate IO ₄ ^? bridging ligands. The coordination polyhedron of the Rb⁺ cation (coordination number 9) can be described as a distorted hexagonal pyramid with a base of six O atoms of one 18-crown-6 ligand and one threefold vertex at three O atoms of the two IO ₄ ^? bridging ligands. The 18-crown-6 ligand has a usual crown conformation.     

Directed Aminomethylation of Pyrrole,Indole, and Carbazole with <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N′</Emphasis>,<Emphasis Type="Italic">N′</Emphasis>-Tetramethylmethanediamine

Catalytic aminomethylation of pyrrole and indole with N,N,N′,N′-tetramethylmethanediamine in the presence of 5 mol % of ZrOCl₂·8H₂O proceeds selectively at the positions 2, 5 of pyrrole and 1, 3 of indole. Carbazole under the same conditions affords 3-formyl-9-aminomethyl derivative. The reaction in the presence of 5 mol % of K₂CO₃ occurs as monoaminomethylation: for pyrrole at the position 2, for indole at the position 3, and for carbazole at the nitrogen atom of the substrate. Water-soluble 1,1′-(1H-pyrrole-2,5-diyl)bis(N,N-dimethylmethanamine) exhibits a fungistatic activity with respect to phytopathogenic fungi Rhizoctonia solani.     

Isomorphous crystal structures of 4,7,13,16,21,24-hexaoxo-1,10-diaziniabicyclo[8.8.8]·hexacosane bis(tribromide) and bis(bromoiodide)

Two compounds, 7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane bis(tribromide) and bis(bromodiiodide) — [H₂(Crypt-222)]²⁺·2Br ₃ ^? (I) and [H₂(Crypt-222)]²⁺·1.45(BrI₂)^?·0.4(Br₂I)^?·0.15 I ₃ ^? (II) — are prepared and characterized by single crystal XRD; the refinement of the second compound was more accurate. Isomorphous monoclinic structures (I, space group C2/c, Z = 4, a = 12.090, b = 15.833 Å, c = 15.732 Å, β = 95.83°; II, a = 12.548 Å, b = 16.417 Å, c = 15.748 Å, β = 94.53°) are solved by a direct method and refined in the anisotropic full-matrix approximation to R = 0.057 (I) and 0.044 (II) using all 2635 (I) and 2852 (II) measured independent reflections (automated CAD-4 diffractometer, λMoK _α). In the structures of I and II one of the trihalide anions sits at the inversion center i(000), and the second trihalide anion and the dication [H₂(Crypt-222)]²⁺ are situated at crystallographic axis 2. In the structure of II iodine is located in the center of trihalide anions, while the terminal atoms are disordered and are represented by a statistical combination of iodine and bromine atoms.     

Synthesis of lupane and 19<Emphasis Type="Italic">β</Emphasis>,28-epoxy-18<Emphasis Type="Italic">α</Emphasis>-oleanane 2,3-<Emphasis Type="Italic">seco</Emphasis>-derivatives based on betulin

The α-hydroxyoximes of methyl betulonate and allobetulone were synthesized. Beckmann fragmentation of them produced the lupane and 19β,28-epoxy-18α-oleanane 2,3-seco-derivatives. Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 491–494, September-October, 2008. Original article submitted July 4, 2008.     

Synthesis and crystal and molecular structures of <Emphasis Type="Italic">N,N</Emphasis>′-methylenedipyridinium tetrachlorozincate(II) and <Emphasis Type="Italic">N,N</Emphasis>′-methylenedipyridinium tetrachlorocadmate(II)

Treatment of N,N′-methylenedipyridinium dichloride [C₅H₅N-CH₂-NC₅H₅]Cl₂ with MCl₂ (M = Zn or Cd) in aqueous solution gives the organic-inorganic hybrid ionic compounds [C₅H₅N-CH₂-NC₅H₅] · [MCl₄]. Both complex salts were fully characterised by multinuclear NMR spectroscopy, elemental analysis, and their molecular structures confirmed by powder X-ray diffraction studies. The most striking feature in both solid state structures was the presence of the C…Cl-M short contacts between the organic [C₅H₅N-CH₂-NC₅H₅] dication and inorganic [MCl₄] anion, which led to different crystal packing. For [C₅H₅N-CH₂-NC₅H₅]·[ZnCl₄], the C…Cl-Zn interactions led to the alternating arrangement of [C₅H₅N-CH₂-NC₅H₅]²⁺[ZnCl₄]²⁻ to form 1-D chains in the direction [010], and each individual chain had a two-fold rotational axis along the b axis, while for [C₅H₅N-CH₂-NC₅H₅] · [CdCl₄] the C…Cl-Cd associations gave 2-D network. In both solid state structures, the presence of Cl-ring centroid distances gave a strong indication of some form of Cl-π interactions.     

Computer models of eutectic-type <Emphasis Type="Italic">T</Emphasis>–<Emphasis Type="Italic">x</Emphasis>–<Emphasis Type="Italic">y</Emphasis> diagrams with allotropy

Using the eutectic-type T–x–y diagram as an example, it can be represented the analysis of its geometrical construction dependence on the temperature of a component two polymorphous modifications which participate in mono- and invariant metatectic and invariant eutectic (eutectoid) transformations above or below (and within) binary eutectics temperature intervals and below a ternary eutectic temperature. Computer models for considered phase diagrams have been designed. Such models help to solve applied tasks like visualization, isopleths and isothermal sections decoding, mass balances calculation and evaluation of phase and conglomerate concentration in microstructure.