Conformational fluxionality in a palladium(II) complex of flexible click chelator 4-phenyl-1-(2-picolyl)-1,2,3-triazole: A dynamic NMR and DFT study

An experimental and theoretical DFT study was carried out on the solution behavior in [D₇]DMF for bis-chelate complex [Pd(L)₂](BF₄)₂·2CH₃CN (L = 4-phenyl-1-(2-picolyl)-1,2,3-triazole). In structure of [Pd(L)₂]²⁺, the central square-planar palladium(II) cation is trans-chelated by two L substrates, each through the pyridine and the triazole N2 nitrogen atoms, forming two six-membered metallacycles. These can adopt boat-like conformations anti-trans-[Pd(L)₂]²⁺ and syn-trans-[Pd(L)₂]²⁺ in which the picolyl methylene carbons are anti or syn, respectively, relative to the palladium coordination plane. In solution, the boat-to-boat inversion at both metallacycles takes place. The conformers are in a dynamic equilibrium, which was monitored by variable-temperature (VT) ¹H NMR spectroscopy in the temperature range of 223-353 K. The equilibrium lies on the side of the anti-trans-[Pd(L)₂]²⁺ conformer and the corresponding reaction enthalpy and entropy is estimated to be 0.6 ± 0.5 kcal mol⁻¹ and 0.8 ± 1 cal mol⁻¹ K⁻¹, respectively. From the full-line-shape analysis of resonances in the VT ¹H NMR spectra, the activation enthalpy and activation entropy was determined to be 13.0 ± 0.4 kcal mol⁻¹ and 2.7 ± 1.6 cal mol⁻¹ K⁻¹, respectively. The activation entropy close to zero suggests a nondissociative mechanism for the isomerisation. DFT investigation revealed that the isomerisation proceeds through a one step mechanism with a barrier of 11.40 kcal mol⁻¹. The structures of the syn and anti conformers as well as that of the transition state were characterized. Energy decomposition analysis was carried out in order to explore the origins of the stability difference between the syn and anti isomers.     

Marked difference in singlet-chemiexcitation efficiency between syn-anti isomers of spiro[1,2-dioxetane-3,1′-dihydroisobenzofuran] for intramolecular charge-transfer-induced decomposition

Spiro[1,2-dioxetane-3,1′-dihydroisobenzofuran] syn-3 bearing a hydroxy group at the 6-position (as a model syn-rotamer of parent dioxetane 4 bearing a 3-hydroxyphenyl group) and its isomer anti-3 (as a model anti-rotamer of 4) were synthesized. When these spiro-dioxetanes were treated with tetrabutylammonium fluoride (TBAF) in DMSO, anti-3 emitted light with high efficiency (Φ^CL = 0.41), while the respective value for syn-3 was only 1/10 for anti-3. This significant difference in Φ^CL between syn-3 and anti-3 was attributed to the difference in their singlet-chemiexcitation efficiencies.     

Synthesis and dynamics of atropisomeric (S)-N-(α-phenylethyl)benzamides

The synthesis of atropisomeric 2-substituted benzamides 2a-e, 3a-e, and 4a-e, and characterization by X-ray structure analysis of 2d, 2e, 3c, 3e, 4c, and 4e are reported. Dynamic ¹H NMR spectroscopic studies of benzamides 2b-d, 3b-d, and 4b-d indicate that only two of the four possible rotamers are present in solution, with population ratios ranging between 1.5:1 and 4.1:1. The measured free energy of activation to interconversion of the rotamers ranged from 12.4 to 18.9 kcal mol⁻¹. Benzamides ArCON[(S)-phenethyl]₂ (2e, 3e, and 4e), exhibited atropisomer ratios between 1.7:1 and 1:1, and free energies of interconversion of the rotamers ranged from 11.5 to 17.6 kcal mol⁻¹. The highest rotation barriers were observed for the ortho-nitro derivatives 2a-e. Molecular calculations at the semiempirical level (PM3MM) gave free energies of activation for benzamides 2e and 3e of 23.6 and 12.4 kcal mol⁻¹, respectively, which are comparable to the experimental values.     

Dinitrogen extrusion from diazidophenylborane: Computational analysis of PhBNx (x = 6, 4, 2) isomers

The energies and structures of possible intermediates in the dinitrogen extrusion from diazidophenylborane 4a to give phenylborylene 11a were determined using density functional (B3LYP), multiconfigurational (CASSCF and MRMP2), and coupled cluster (CCSD(T)) computations in conjunction with basis sets of up to cc-pVTZ quality. Formation of 11a and nitrogen from 4a is an exothermic process (−21 kcal mol⁻¹). The triplet electronic ground state of azidophenylborylnitrene 5a (PhBN₄) is only 26 kcal mol⁻¹ higher in energy than 4a and the phenyl shift in 5a to yield N-azidophenyliminoborane 7a is highly exothermic.     

High basicity of tris-(tetramethylguanidinyl)-phosphine imide in the gas phase and acetonitrile—a DFT study

It is shown by reliable density functional theory (DFT) calculations that compounds 4 and 6 are very powerful neutral organic superbases as evidenced by the calculated proton affinities in the gas phase 305.4 kcal mol⁻¹ (44.8) and 287.8 kcal mol⁻¹ (37.8), respectively, and the corresponding calculated pK_a values in acetonitrile given within parentheses.     

Synthesis, X-ray crystallographic, and dynamic H NMR studies of crown-tetrathia[3.3.3.3]metacyclophanes—conformational control by cooperative intramolecular C-H?π interaction both in solid state and in solution

Crown-tetrathia[3.3.3.3]metacyclophanes 3a-c were synthesized via intermolcular coupling reaction in 22-30% yields. X-ray crystal analysis of 3b revealed that it adopted a perpendicular conformation (3b-B or 3b-C) in which two aromatic rings were inclined to be perpendicular to the opposite aromatic rings, driving two internal methyl groups into the π-cloud of the corresponding benzene rings. Furthermore, this perpendicular structural feature led to benzylic protons of thia-bridges being in close proximity to the adjacent aromatic rings. As a result, the induced upfield shifts for the two internal methyl protons and four benzylic protons were clearly observed in dynamic ¹H NMR spectra at low temperature, indicating that the intramolecular C-H?π interaction became increasingly important at low temperature. The energy barrier for inter-conversion between 3b-B and 3b-C was estimated to be 12.1 kcal mol⁻¹ by using a coalescence method. The total stabilization enthalpy of the C-H?π interactions was quantitatively calculated to be 7.9±0.8 kcal mol⁻¹ by the dynamic NMR spectroscopy. In contrast, 3a showed two non-interconvertible conformers at room temperature, which tended to interconvert at elevated temperature, however, many conformers co-existed at low temperature.     

Two-carbon homologation of ketones via sily ketene acetals: Synthesis of α,β-unsaturated acids and α-trimethylsilyl δ-ketoacids

The reaction of C,O,O-tris(trimethylsilyl)ketene acetal 1 with saturated, cyclic and aromatic ketones 2 proceeds smoothly in the presence of titanium chloride to give (E)-α,β-unsaturated carboxylic acids 3 with fairly good stereoselectivity. With α,β-unsaturated ketones 4, α-trimethylsilyl δ-ketoacids 5 (syn + anti) are obtained according to Michael-type 1,4 addition. These diastereoisomers are separated and the configurations of 5a are achieved by X-ray molecular analysis.     

Synthesis and conformational analysis of 3-hydroxypipecolic acid analogs via CSI-mediated stereoselective amination

A short and efficient stereoselective synthetic approach toward substituted piperidines, involving (2S,3S)-3-hydroxypipecolic acid 1, (2R,3S)-3-hydroxypipecolic acid 3, and their acid-reduced analogs 2 and 4, has been developed. The requisite anti- and syn-1,2-amino alcohols 11 and 12 for the preparation of title four piperidine analogs 1-4 were synthesized via the regioselective and diastereoselective amination of anti- and syn-1,2-dibenzyl ethers 13 and 14 using chlorosulfonyl isocyanate (CSI). As a result, reaction of anti-1,2-dibenzyl ether 13 with CSI afforded exclusively the anti-1,2-amino alcohol 11 with the diastereoselectivity of 49:1 in toluene at −78 °C and syn-isomer 14 gave the syn-1,2-amino alcohol 12 as the major product with the diastereoselectivity of 12:1 in hexane at −78 °C. The result of these reactions could be explained by the neighboring group effect leading to retention of stereochemistry. In addition, conformational changes of trans-piperidine intermediate 9 in terms of the nature of N-protecting groups are described. The conformations of 9 and 24-28 were confirmed by ¹H NMR analysis and NOE correlation. Furthermore, the conformations of piperidines 18 and 23 with hydroxyl methyl substituent at C-2 were investigated by NMR spectroscopy.     

An efficient and practical procedure for Strecker reaction: a highly diastereoselective synthesis of a key intermediate for (+)-biotin

Treatment of α-amino aldehyde 2, which was prepared through Moffatt oxidation of the corresponding β-amino alcohol 5, with aqueous sodium bisulfite allowed clean conversion to a water-soluble bisulfite adduct 6 [>99% conversion, 89% yield (two steps)]. The aqueous solution of 6 was treated with benzylamine followed by easy-handling NaCN to effect the Strecker reaction to afford α-amino nitrile 3 with high diastereoselectivity and in high yield (syn/anti = 11:1, 95% assay yield). Both the compounds syn-3 and anti-3 were converted to a key intermediate 4 for (+)-biotin through S,N-carbonyl migration in high yields.     

Two new water-soluble derivatives of 1,3,5-triaza-7-phosphaadamantane (PTA): Synthesis,characterization, X-ray analysis and solubility studies of 3,7-diformyl-1,3,7-triaza-5-phosphabicyclo[3.3.1]nonane and 1-pyridylmethyl-3,5-diaza-1-azonia-7-phosphatricyclo[3.3.1.1]decane bromide

Two water-soluble phosphines, 3,7-diformyl-1,3,7-triaza-5-phosphabicyclo[3.3.1]nonane (1, DFPTA) and 1-pyridylmethyl-3,5-diaza-1-azonia-7-phosphatricyclo[3.3.1.1]decane bromide (2, [pymePTA]Br), have been respectively, prepared by reacting 1,3,5-triaza-7-phosphaadamantane (PTA) with formic anhydride and bromomethylpyridine. Compound 1 is only the second acyl derivative of PTA to be prepared while 2 is only the second derivative of PTA reported that contains an aromatic appendage. Both compounds were characterized by elemental analysis, FAB-MS, ¹H, ¹³C, and ³¹P NMR spectroscopy, and single crystal X-ray diffraction. This analysis showed that the formamide groups of 1 were in an anti confirmation in solution but in a syn confirmation in the solid state. The solubilities of 1 and 2 were examined in common organic solvents and water. It was found that 1.1 M aqueous solutions of 1 could be prepared while 2.4 M solutions of 2 were produced. The greater solubility of 2 was likely due to its ionic nature.     

Synthesis, structure and dynamic stereochemistry of (O → Si)-chelate N-(trifluorosilylmethyl)-[N-(S)-(1-phenylethyl)]acetamide and 1-(trifluorosilylmethyl)-2-oxoperhydroazepine: Retention of the O → Si coordination in the adduct with KF and 18-crown-6

The novel compounds, N-(trifluorosilylmethyl)-[N-(S)-(1-phenylethyl)]-acetamide (1a) and 1-(trifluorosilylmethyl)-2-oxoperhydroazepine (1b) have been prepared from the corresponding NH-compounds using ClCH₂SiCl₃/Et₃N or ClCH₂SiCl₃/(Me₃Si)₂NH followed by methanolysis or hydrolysis of the reaction mixture in the presence of Lewis bases, and then BF₃ etherate. Potassium-(18-crown-6)-(2-oxoperhydroazepinomethyl)tetrafluorosilicate (2) was synthesized by reaction of the trifluoride (1b) with KF in the presence of 18-crown-6. Using ¹⁹F, ²⁹Si NMR and X-ray diffraction techniques it was established that the silicon atom is pentacoordinate in the trifluorides (1a, b) and hexacoordinate in the adduct 2. Thus the internal coordination of the O → Si bond present in the trifluoride (1b) is retained in the adduct 2.The stereochemical non-rigidity of the trifluorides (1a, b) and the N-(trifluorosilylmethyl)-N-methylacetamide (1c) was investigated using dynamic ¹⁹F NMR spectroscopy. The activation barriers for permutational isomerization are in the range 9.5-10 kcal mol⁻¹. Lower values of ΔG^# for permutation of trifluorides (1a-c) compared to the monofluorides with the coordination core OSiC₃F together with small negative values for the activation entropy implies a non-dissociative mechanism. Quantum-chemical analysis suggests a mechanism involving a turnstile rotation.     

Synthesis and electrochemical properties of bis(bipyridine)ruthenium(II) complexes bearing pyridinyl- and pyridinylidene ligands induced by cyclometalation of N′-methylated bipyridinium analogs

Ruthenium complexes with bipyridine-analogous quaternized (N,C) bidentate ligands [RuL(bpy)₂](PF₆)₂ (bpy = 2,2′-bipyridine, (1), L = L¹ = N′-methyl-2,4′-bipyridinium; (2), L = L² = N′-methyl-2,3′-bipyridinium) were synthesized and characterized. The structure of complex 2 was determined by the X-ray structure analysis. The ¹³C{¹H} NMR spectroscopic and cyclic voltammetric studies indicate that the coordination modes of these ligands are quite different, that is, the C-coordinated rings of (N,C)-ligands in 1 and 2 are linked to ruthenium(II) with a pyridinium manner and a pyridinylidene one, respectively. The ligand-localized redox potentials of 1 and 2 also revealed the substantial difference in the electron donating ability of both ligands.     

Syntheses and reactivities of azido coordinated CpCo(dithiolene) complexes

Azido coordinated dithiolene complexes [CpCo(N₃){S₂C₂(CO₂Me)₂}(S-CHR¹R²)], where R¹, R² = H (4a); R¹ = H, R² = SiMe₃ (4b); R¹ = H, R² = CO₂Et (4c), were synthesized by the reactions of the corresponding Cl⁻ coordinated precursors [CpCo(Cl){S₂C₂(CO₂Me)₂}(S-CHR¹R²)] (3a-3c) with sodium azide. The Cl⁻ coordinated complex 3d (R¹, R² = CO₂Me) did not produce any N₃⁻ coordinated complexes but formed the CR¹R²-bridged alkylidene adduct [CpCo{S₂C₂(CO₂Me)₂}(CR¹R²)] (2d; R¹, R² = CO₂Me). The structure of 4a was determined by X-ray diffraction study. In the molecular structure of 4a, the coordinated N₃⁻ ligand and CHR¹R² group were located at the same side with respect to the dithiolene ring (syn form), although the corresponding Cl⁻ precursor (3a; R¹, R² = H) was anti form. A structural conversion of syn/anti was conceivable during the Cl⁻/N₃⁻ ligand exchange. Thermal (80 °C) and photochemical reactions (Hg lamp) of 4a-4c were performed. Among them, 4c was relatively well reacted compared with the others to form the CR¹R²-bridged alkylidene adduct (2c; R¹ = H, R² = CO₂Et), followed by a formal HN₃ elimination, and the reaction also produced non-adduct of the cobalt dithiolene complex [CpCo{S₂C₂(CO₂Me)₂}] (1). The electrochemical 1e⁻ reduction of 4c underwent a formal N₃⁻ ligand elimination, and successive second reduction caused the CHR¹R² group elimination or reformed the CR¹R²-bridged alkylidene adduct 2c.     

Synthesis and structure of N-arylimines of β-tellurocyclohexenals with the intramolecular coordination N → Te bonds

A series of N-arylimines of β-tellurocyclohexenals 11 have been synthesized and the molecular and crystal structures of the compounds 11a-e and also β-(dimethyltelluronium)cyclohexenal perchlorate 12 studied by X-ray crystallography. All the compounds contain strong intramolecular coordination N → Te (O → Te) bonds of the hypervalent type. In 11a-e, the lengths of the N → Te bonds are within the range of 2.690-2.147 Å and are 1.0-1.5 Å shorter than the sum of the van der Waals radii of respective atoms. In the N-arylimines 11b-e with the electronegative groups attached to the tellurium center, the lengths of the N → Te bonds are very close to that characteristic of a standard covalent N-Te bond. The experimental observed geometries are well reproduced by the DFT calculations performed at B3LYP/LanL2DZ level of approximation. The energies of the intramolecular coordination N → Te bonds vary from 23 kJ mol⁻¹ for 11a to 119 kJ mol⁻¹ for 11e. The calculated energy of the O → Te bond in 12 was found to be 50 kJ mol⁻¹. The ¹²⁵Te NMR chemical shifts of compounds 11 span the wide range of 734.3-1622.4 ppm. The largest downfield ¹²⁵Te NMR chemical shifts are observed in the case of the compounds 11e, f in which the most electronegative atoms are attached to the tellurim centers.     

The effect of spiroadamantane substitution on the conformational preferences of N-Me pyrrolidine and N-Me piperidine: a description based on dynamic NMR spectroscopy and ab initio correlated calculations

Dynamic NMR spectroscopy and ab initio correlated calculations revealed that the attachment of a spiroadamantane entity at the C-2 position of N-methylpyrrolidine or N-methylpiperidine induces a severe steric crowding around nitrogen, which changes the conformational space of the heterocycle resulting in: (a) the complete destabilization of the N-Me(eq) conformer in spiranic structures; in contrast the N-Me(eq) conformer corresponds to the global minimum in N-methylpyrrolidine or N-methylpiperidine. The spiroadamantane structure raises the energy of the equatorial conformer because of the severe van der Waals repulsion between the N-Me(eq) group and adamantane C-H bonds. (b) The interconversion between the only populated enantiomeric N-Me(ax) conformers ax→[eq]→ax′; the interconversion eq→ax between N-Me(eq) and N-Me(ax) conformers, which are both populated, is observed in N-methylpyrrolidine or N-methylpiperidine. (c) The raising of ring and nitrogen inversion barriers ax→ts by ∼4-6 kcal mol⁻¹. The dynamic NMR study provides evidence that the most important process required for the enantiomerization between the axial N-Me conformers in spiropiperidine 4 and spiropyrrolidine 5 are different, i.e., a nitrogen inversion in 5 (9.10 kcal mol⁻¹) and a ring inversion in 4 (15.2 kcal mol⁻¹). While an enantiomerization interconverts N-Me axial conformers in spiropiperidine 5 and spiropyrrolidine 4, substitution of the pyrrolidine ring of 5 with a C-Me group effects a diastereomerization between two N-Me axial conformers and reduces effectively the nitrogen inversion barrier according to the protonation experiments and the calculations. In general, all the calculations levels used, i.e., the MM3, B3LYP/6-31+G^∗∗ and MP2/6-311++G^∗∗//B3LYP/6-31+G^∗∗, predict correctly the different stability of the local minima; however only MP2/6-311++G^∗∗//B3LYP/6-31+G^∗∗ was found to be reliable for the calculation of the nitrogen inversion barriers.     

Synthesis and properties of 4,9-methanoundecafulvenes and their transformation to 3-substituted 7,12-methanocycloundeca[4,5]furo[2,3-d]pyrimidine-2,4(1H,3H)-diones: photo-induced autorecycling oxidizing reaction toward amines

The synthesis and properties of 4,9-methanoundecafulvene [5-(4,9-methanocycloundeca-2′,4′,6′,8′,10′-pentaenylidene)pyrimidine-2,4,6(1,3,5H)-trione] derivatives 8a,b were studied. Their structural characteristics were investigated on the basis of the ¹H and ¹³C NMR and UV-vis spectra. The rotational barrier (ΔG^‡) around the exocyclic double bond of 8a was found to be 12.55 kcal mol⁻¹ by the variable temperature ¹H NMR measurement. The electrochemical properties of 8a,b were also studied by CV measurement. Furthermore, the transformation of 8a,b to 3-substituted 7,12-methanocycloundeca[4,5]furo[2,3-d]pyrimidine-2,4(1H,3H)-diones 16a,b was accomplished by oxidative cyclization using DDQ and subsequent ring-opening and ring-closure. The structural details and chemical properties of 16a,b were clarified. Reaction of 16a with deuteride afforded C13-adduct 19 as the single product, and thus, the methano-bridge controls the nucleophilic attack to prefer endo-selectivity. The photo-induced oxidation reaction of 16a and a vinylogous compound, 3-methylcyclohepta[4,5]furo[2,3-d]pyrimidine-2,4(3H)-dione 2a, toward some amines under aerobic conditions were carried out to give the corresponding imines (isolated by converting to the corresponding 2,4-dinitrophenylhydrazones) with the recycling number of 6.1-64.0 (for 16a) and 2.7-17.2 (for 2a), respectively.     

Novel non-chelated cobalt(II) benzimidazole complex catalysts: Synthesis, crystal structures and cocatalyst effect in vinyl polymerization of norbornene

The novel non-chelated monodentate benzimidazole (BI) complexes CoCl₂(BI)₂ (1)-(3), where BI = 1-(2-methoxybenzyl)- 2-(2-methoxyphenyl)-1H-benzimidazole (1), BI = 2-(2,6-difluorophenyl)-1H-benzimidazole (2) and 2-methyl-1H-benzimidazole (3) were synthesized and characterized by single X-ray crystallography. Unexpectedly, in solid state these complexes show similar coordination behavior to their analogue nickel(II) benzimidazole complexes such as inter-molecular H-bonding pattern and presence of acetonitrile solvent molecules per unit of complex molecule. Moreover, among these cobalt catalysts 1-3, similar trend to that of nickel catalysts is observed for metal-to-nitrogen (M-X) coordination bond length and halogen-metal-halogen (X-M-X) bond angle. But unlike nickel(II) benzimidazole complexes, these catalysts show very low activity for vinyl polymerization of norbornene (NB) upon activation with methylaluminoxane (MAO); however, the activity abruptly increased in modified methylaluminoxane (MMAO). The presence of a small amount of toluene strongly hampered the activity, and the use of dry methylaluminoxane (dMAO) as a cocatalyst did not result in a high activity. The use of toluene-free solid modified methylaluminoxane (sMMAO) is found to be the best cocatalyst, where the highest activity of value 3.9 × 10⁷ g of PNB mol_Co⁻¹ h⁻¹ was achieved for 3/sMMAO at 30 °C.     

Syntheses, structures and catalytic activity of copper(II) complexes bearing N,O-chelate ligands

Copper complexes [Cu(Lⁿ)₂] 1-4 bearing N,O-chelating β-ketoamine ligands Lⁿ based on condensation products of 1-phenyl-3-methyl-4-benzoyl-5-pyrazolone with aniline (L¹), α-naphthylamine (L²), o-methylaniline (L³), and p-nitroaniline (L⁴), respectively, were synthesized and characterized by IR, ¹H NMR and X-ray crystallography (except 2). They were shown to catalyze the vinyl polymerization of norbornene when activated by methylaluminoxane (MAO). Both steric and electronic effects are important and influential factors contributing to the catalytic activity of the complexes with the order of 2 > 4 > 3 > 1.     

Coordination compounds of N,N′-olefin functionalized imidazolin-2-ylidenes

N-Heterocyclic carbene ligands (NHC) were metalated with Pd(OAc)₂ or [Ni(CH₃CN)₆](BF₄)₂ by in situ deprotonation of imidazolium salts to give the N-olefin functionalized biscarbene complexes [MX₂(NHC)₂] 3-7 (3: M = Pd, X = Br, NHC = 1,3-di(3-butenyl)imidazolin-2-ylidene; 4: M = Pd, X = Br, NHC = 1,3-di(4-pentenyl)imidazolin-2-ylidene; 5: M = Pd, X = I, NHC = 1,3-diallylimidazolin-2-ylidene; 6: M = Ni, X = I, NHC = 1,3-diallylimidazolin-2-ylidene; 7: M = Ni, X = I, NHC = 1-methyl-3-allylimidazolin-2-ylidene). Molecular structure determinations for 4-7 revealed that square-planar complexes with cis (5) or trans (4, 6, 7) coordination geometry at the metal center had been obtained. Reaction of nickelocene with imidazolium bromides afforded the η⁵-cyclopentadienyl (η⁵-Cp) monocarbene nickel complexes [NiBr(η⁵-Cp)(NHC)] 8 and 9 (8: NHC = 1-methyl-3-allylimidazolin-2-ylidene; 9: NHC = 1,3-diallylimidazolin-2-ylidene). The bromine abstraction in complexes 8 and 9 with silver tetrafluoroborate gave complexes [NiBr(η⁵-Cp)(η³-NHC)] 10 and 11. The X-ray structure analysis of 10 and 11 showed a trigonal-pyramidal coordination geometry at the nickel(II) center and coordination of one N-allyl substituent.