Strained cyclophane natural products: macrocyclization at its limits

Cyclophane natural products comprise an intriguing class of structurally diverse compounds. As inherent for all cyclic compounds regardless of their origin, macrocyclization is naturally the most decisive step, which defines the overall efficiency of the synthetic pathway. Especially in small cyclophane molecules, this key step constitutes an even greater challenge. Due to the strain imparted by the macrocyclic system, free rotation of the benzene ring(s) is often restricted depending on both the constitution of the tether and the aromatic portions. Not surprisingly, the synthesis of natural cyclophanes with their often outstanding pharmaceutical activities and the inherent issues associated with their preparation has attracted much attention among the synthetic community. In particular, it stimulated the development of new strategies for the ring-closing step, as often otherwise well established and robust reactions fail to perform effectively. In this review, we describe the challenges synthetic chemists are facing during the synthesis of this small, but structurally and biologically fascinating class of natural products, concentrating on the representatives exhibiting configurational stability. The main focus will be on the different concepts for the installation of the macrocyclic system, in most cases the central problem in assembling these extremely rigid molecules.     

Three-dimensional through-space/through-bond delocalization in cyclophane systems: a molecule-in-molecule approach

In this article, we propose a simple strategy to identify the nature of excitonic couplings in a series of cyclophanedienes based on the "molecule-in-molecule" (MIM) theory. The contributions of charge-transfer (CT) exciton, unavailable by the commonly used supermolecular approach due to the inadequate basis set, can be unambiguously identified within this methodology. Combining the CT contributions calculated on the cyclophanedienes and the corresponding hypothetical molecules with tethers removed, one can infer the information on the relative importance of through-bond and through-space contributions in the low-lying excited states. Particularly, we discovered that the tether effect for the meta-linkage cyclophanedienes is crucial, whereas those for para-linkage cyclophanedienes are vanishingly small. The changes in the coupling between two moieties for both the six-membered meta-linkage and five-membered cyclophanedienes arise primarily from an increase in the through-bond charge-transfer component of the coupling (>70%). Within the MIM model, the delocalization pathway of the dimer in the excited state can be explained quantitatively by a CT exciton, which differs from the approach based on the conventional orbital interaction analysis.     

Atropselective macrocyclization of diaryl ether ring systems: application to the synthesis of vancomycin model systems

Vancomycin is the last line of defense available in the clinic for treating multidrug-resistant bacterial infections. Vancomycin contains two 16-membered diaryl ether macrocycles, each of which contains a stereogenic axis across the diaryl ether linkage. Since an effective total synthesis of vancomycin requires that these stereogenic axes be formed in a stereoselective manner, we have developed an atropselective variation of the triazene mediated diaryl ether forming reaction. This variation introduced an energetic penalty into the transition state of the undesired atropisomer. This reaction is used to synthesize the C-O-D diaryl ether macrocycle found in vancomycin with high diastereoselectivity (de > 90%), providing the naturally occurring atropisomeric configuration.     

A highly efficient iterative approach to fused ether ring systems

An iterative synthesis of fused ether ring systems has been developed. This strategy couples a cyclic enol ether oxidation and carbon-carbon bond forming reaction in one flask with an acid catalyzed cyclic acetal formation and alkoxide elimination in another flask. The result is a general and highly efficient two flask synthesis of fused ethers as are present in a wide variety of bioactive natural products.     

An approach to the imine ring system of pinnatoxins

[reaction: see text] A concise stereoselective approach to the spirobicyclic imine fragment of pinnatoxins and pteriatoxins is described. The approach relies on a tandem reaction sequence involving consecutive sigmatropic rearrangements to build the quaternary chiral center at the core of the spirobicyclic ring system.     

An intramolecular diels-alder approach to the galanthan ring system

A novel “phenylbutadiene + Δ²-pyrroline” intramolecular cycloaddition has been used to construct a functionalized galanthan.     

A synthetic approach to bicyclo[6.2.1]undecane ring systems

A synthesis of a functionalized bicyclo[6.2.1]undecane, N-(7-hydroxymethyl-bicyclo[6.2.1]undeca-3,5,9-trien-2-yl)-4-methyl-benzenesulfonamide, is described. Starting with a [6+4] cycloaddition between cyclopentadiene and cycloheptatrienone, the final product was prepared in five steps with an overall 37% yield. The remarkable resistance to hydrolysis of an intermediate lactam was overcome by tosylating the amide and reducing with LiAlH₄.     

Spectroscopic properties of cyclophane/anthracene and cyclophane/9-fluorenone complexes in dichloromethane

Host/guest interactions of cyclophane/anthracene (C/A) and cyclophane/9-fluorenone (C/F) complexes in dichloromethane, where the cyclophane molecule is the host, are investigated. The stability constants, log K_a, for the C/A and C/F complexes are determined by absorption and fluorescence spectroscopy. For the C/A system, log K_a is 4.2±0.2 as determined from absorption (at 325 nm) and emission (at 382, 403 and 427 nm) spectroscopic data. The analogous measurements yield 3.6±0.2 from absorption (at 309 nm) and emission (at 505 nm) spectroscopic data for the C/F system. Heats of formation of these complexes were determined by measuring the complex association constants at 25, 29 and 32 °C. These results reveal that binding of the anthracene guest by this cyclophane molecule is thermodynamically favored over that for a 9-fluorenone guest. Excited state lifetimes of these systems are also determined.     

Potent thrombin inhibitors via a 20-membered ring olefin metathesis macrocyclization

Twenty-membered ring pyrazinone derived macrocycles were prepared as a means to enhance the potency of existing thrombin inhibitors. Macrocyclization was accomplished via Grubbs olefin metathesis of a highly functionalized allyl-alloc scaffold, thus further confirming the power of such methodology.     

Syntheses of epi-aigialomycin D and deoxy-aigialomycin C via a diastereoselective ring closing metathesis macrocyclization protocol

Syntheses of epi-aigialomycin D and deoxy-aigialomycin C are described via a remote stereocontrolled RCM macrocyclization.     

An approach toward homocalystegines and silyl-homocalystegines. acid-mediated migrations of acetates in seven-membered ring systems

A short access to homocalystegine analogues silylated at C7 is described. The synthesis involves the desymmetrization of a (phenyldimethylsilyl)methylcycloheptatriene using osmium-mediated dihydroxylation, followed by the diol protection and a cycloaddition involving the remaining diene moiety and an acylnitroso reagent. Additions of the osmium and acylnitroso reagents were shown, through X-ray diffraction studies of the resulting major isomers, to occur anti and syn, respectively, relative to the SiCH(2) substituent. N-O bond cleavage on the resulting cycloadduct then produces the aminopolyol having a silylmethyl substituent. Oxidation of the C-Si bond also afforded an access to unusual amino-heptitols having five contiguous stereogenic centers. In the course of this work, we finally observed a unusual rearrangement taking place on cycloheptanone 18 substituted by two acetyl groups and a neighboring Boc-protected amine. A profound reorganization of the substituents on the seven-membered ring effectively took place under acidic conditions (TFA) leading to the thermodynamically more stable homocalystegine-type compound. DFT calculations of the conformational energy of isomeric silyl homocalystegines indicated that the product observed upon the acid-mediated rearrangement was the most stable of a series of analogues with various distributions of substituents along the seven-membered ring backbone. A tentative mechanism is proposed to rationalize the acetate migrations and inversions of the stereochemistry at various stereocenters.     

Synthesis of the ring system of phomactin D using a Suzuki macrocyclization

[reaction: see text]The ring system of phomactin D was synthesized in racemic form in an efficient manner from 2,3-dimethylcyclohexanone. Notable transformations include (1) an alkylation of the enolate of a vinylogous thiolester to install a quaternary stereocenter, (2) a conjugate addition of cyanide to an alpha,beta-unsaturated aldehyde, (3) the formation of a Weinreb amide directly from a cyanohydrin, and (4) an intramolecular Pd-mediated Suzuki coupling of a B-alkyl-9-BBN derivative and a vinyl iodide to form the macrocyclic ring.     

An approach to the analysis of crosslinked epoxy systems

Summary The most widely use epoxy resins are the diglycidylethers of bisphenol A which in both the uncured and curd states posses functional groups that are theoretically amenable to cleavage using the vigorous conditions possible with acid or alkaline fusion chromatography.The cleavage of the simple oligomeric epoxy resins has been investigated together with their crosslinked products with diprimary amines of increasing molecular weight, several polyamines and dimer fatty polyamides. The results are discussed with regard to other polymer systems incorporating bisphenol A.Dedicated to Professor Leslie S. Ettre on the occasion of his 70th birthday.     

Diversity-oriented approach to macrocyclic cyclophane derivatives by Suzuki-Miyaura cross-coupling and olefin metathesis as key steps

Palladium-catalyzed Suzuki-Miyaura (SM) cross-coupling reaction with allylboronic acid pinacol ester and titanium assisted cross-metathesis (CM)/ring-closing metathesis (RCM) cascade has been used to synthesize macrocyclic cyclophane derivatives.     

Furan ring opening-isochromene ring closure: a new approach to isochromene ring synthesis

A new approach toward the synthesis of 1H-isochromenes based on the recyclization of the furan ring in the corresponding ortho-hydroxymethylbenzylfurans is described.     

一种合成2-苄基类取代Pyrrolizidine和Pyrrolizidinone环系的新途径

本文报道合成Pyrrolizidinone和Pyrrolizidine环系的新方法,即通过酰亚胺正离子成环,然后经碳正离子重排而成Pyrrolizidinone环系.采用这种方法,合成了六个新的Pyrrolizidinone及Pyrrolizidine生物碱类似物.