Influence of polarization functions on molecular electrostatic potentials

We study the effects of d-polarization functions, centered on the heavy atoms, on the SCF molecular electrostatic potentials calculated for some molecules. The positions and energies of the minima found are very sensitive to the inclusion of polarization functions in the basis set used. The variations depend on the heavy atom involved and on the possible anisotropy of its charge distribution. These variations are particularly important for second-row atoms.     

Effects of peripheral substituents and axial ligands on the electronic structure and properties of cobalt porphyrins

The effects of peripheral substituents and axial ligands (L) on the electronic structure and properties of cobalt tetraphenylporphyrin (CoTPP) have been studied using DFT methods. Various density functionals were tested, and the ground state of each system was determined by considering several possible low-lying states. The ground states of the fully fluorinated CoTPPF28(L)2 complexes with L = THF, Py, and Im were identified to be high-spin (4E(g)) by the meta-GGA functional tau-HCTH, which contains the kinetic energy density tau, in agreement with experimental measurements. All the pure GGA functionals, including the recently developed mPBE, OPBE, and HCTH/407, show more or less overestimation of the relative energies of the high-spin states. The energy gap between the 2A(1g) and 4E(g) states is insignificant (approximately 0.1 eV) and varies in the order L = Py < L = THF < L = Im. The results and their trend are consistent with 19F NMR studies which show partial population of the 4E(g) state in CoTPPF28(THF)2 and CoTPPF28(Py)2 and a complete conversion to the high-spin state in CoTPPF28(1-MeIm)2. Upon coordination by two very strong field axial CO ligands, CoTPPF28(CO)2 becomes low-spin, as in unligated CoTPPF(x). The influence of the peripheral substituents and axial ligands on the ionization potentials, electron affinities, and CoTPPF(x)-(L)2 binding strength was also investigated in detail.     

Influence of electronegative substituents on the electronic spectra of the porphyrins in the form of dications

The positions of the electronic absorption bands and also the intensities of the Soret bands of the porphyrins with ethoxycarbonyl substituents in the form of dications have been calculated by the LCAO MO method in Huckel's approximation. Comparison with the experimental results shows good agreement.     

Influence of electronegative substituents on the electronic spectra of the porphyrins in the form of dications

The positions of the electronic absorption bands and also the intensities of the Soret bands of the porphyrins with ethoxycarbonyl substituents in the form of dications have been calculated by the LCAO MO method in Huckel's approximation. Comparison with the experimental results shows good agreement.     

Electronic structure of porphyrins with electronegative substituents

Using the MO LCAO method in Hückel's approximation, the -electronic charges and the bond orders of porphyrins containing ethoxycarbonyl and methyl substituents in the -positions have been calculated. A correlation has been observed between the frequencies of stretching vibrations of the C=O groups in the IR spectra and the orders of their bonds. Changes in the chemical shifts of the protons of the methyl groups with the introduction of ethoxycarbonyl substituents agree with the changes in the -electron charges.     

The effect of electronegative substituents on the electronic spectra of porphyrins

The Hückel approximation MO method is used to calculate -electron levels of energy and forces of dipole transitions, giving rise to a Soret absorption band in the spectra of porphyrins with carbethoxyl substituents. Comparison with experimental data shows that the theory correctly represents changes in electronic absorption spectra with changes in structure.     

Porphyrins with exocyclic rings. Part 21: Influence of pyrrolic and carbocyclic ring alkyl substituents on the synthesis of porphyrins bearing six-membered exocyclic rings

A series of 5-substituted 4,5,6,7-tetrahydroindoles were prepared by reacting 4-substituted cyclohexanones with phenylhydrazones derived from esters of acetoacetic acid under Knorr-type reaction conditions. Related 6,6-dimethyltetrahydroindoles were also prepared by reacting dimedone with oximes by the Knorr pyrrole syntheses, followed by selective reduction of the remaining ketone moiety with diborane. The substituted tetrahydroindoles were regioselectively oxidized with lead tetraacetate to give the related 7-acetoxy derivatives, and these reacted with 5-unsubstituted pyrrole esters to give pyrrolyltetrahydroindoles. In one case, a bromo substituent was used to protect the β-position of the pyrrole reactant. Cleavage of the benzyl ester protective groups with hydrogen over Pd/C, which also removes the bromo-protective group, gave four dipyrrole carboxylic acids. These were condensed with a dipyrrylmethane dialdehyde using the MacDonald ‘2+2’ condensation to give substituted porphyrins with six-membered exocyclic rings. These structures are useful for comparison to porphyrin samples found in organic-rich sediments such as oil shales and petroleum. The presence of methyl substituents on the six-membered ring for the tetrahydroindole precursors slightly decreases the yields for porphyrin synthesis, and this effect is enhanced when the system becomes more sterically crowded due to the presence of an ethyl group of the adjacent pyrrole ring. 5-Alkyl substituted tetrahydroindoles were also converted to tetrapropanoporphyrins via a cyclotetramerization procedure. The alkyl substituents again decreased the yields, although 5-alkyl substituents were found to have a far less deleterious effect than 6-alkyl groups. In addition to providing samples to help assign the vibrational spectra of geoporphyrin samples, these results demonstrate that highly substituted porphyrin systems can be prepared from tetrahydroindole derivatives.     

Topography of approximate molecular electrostatic potentials

A new method is described for the approximation of the molecular electrostatic potential (MESP). This method is used for the study of the topography of small molecules. The critical points of the approximate and the exact MESP are compared. It is found that most of the critical points of the exact MESP are retained, but in regions where the exact MESP changes slowly near critical points the number of critical points of the approximate MESP can be reduced.     

Influence of substituents on the through-space shielding of aromatic rings

A series of naphthalene derivatives, bearing a methyl group and a substituted phenyl ring in a 1,8-relationship, have been synthesized. The chemical shifts of the protons of the methyl group, which are pointed toward the shielding zone of the phenyl ring, were monitored as the phenyl substituents were varied. This work indicates that the shielding effect of the phenyl ring is not so severely altered by the substituents as to significantly influence the chemical shift of the methyl group. Nonetheless, within the small changes observed experimentally, there appears to be a tendency for electron-withdrawing X to shift the methyl signal downfield, whereas electron-donating X-groups cause a more upfield shift. Polarization and field effects are discussed as possible causes for this phenomenon. Chemical shifts computed for selected members of the series, using the recently published procedures of Rablen and Bally, are in agreement with the experimentally observed trends.     

Influence of steric and electronic effects of substituents on the molecular structures and conformational flexibility of 1,8-naphthalenedicarboximides

A series of 1,8-naphthalenedicarboximide derivatives containing substituents of different steric and electronic nature were studied by X-ray diffraction analysis.Ab initio quantumchemical calculations in the HF/3–21G approximation demonstrated the high conformational flexibility of the imide tetrahydro ring in the molecules of these compounds. The electronic nature of the substituents has no effect on the geometry and conformational flexibility of naphthalenedicarboximides due to weak conjugation between the imide and naphthalene fragments in the molecules. However, the steric effects of the bulky substituents noticeably affect the equilibrium geometry of the imide ring by increasing its conformational flexibility. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 68–73, January, 2000.     

Influence of steric and electronic effects of substituents on the molecular structures and conformational flexibility of 1,8-naphthalenedicarboximides

A series of 1,8-naphthalenedicarboximide derivatives containing substituents of different steric and electronic nature were studied by X-ray diffraction analysis.Ab initio quantumchemical calculations in the HF/3–21G approximation demonstrated the high conformational flexibility of the imide tetrahydro ring in the molecules of these compounds. The electronic nature of the substituents has no effect on the geometry and conformational flexibility of naphthalenedicarboximides due to weak conjugation between the imide and naphthalene fragments in the molecules. However, the steric effects of the bulky substituents noticeably affect the equilibrium geometry of the imide ring by increasing its conformational flexibility. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 68–73, January, 2000.     

Influence of polarization fluctuations on the electronic structure of molecular solids

Fluctuations in the intermolecular polarization energies of charge states in molecular solids can lead to broad (ΔE ≈ 0.5 eV) distributions of localized states, especially in polymers. Such fluctuations are caused by defects (e.g. surfaces) and thermal vibrations in molecular crystals and also by variations in the local structure in polymers. The resulting energy distributions yield natural interpretations of such diverse observations on the broadening of the photoemission spectra of molecular solids and the contact charge exchange spectra of polymers.     

Effects of ethynyl substituents on the electronic structure of cyclobutadiene

The effects of ethynyl substitution on the electronic structure of cyclobutadiene are investigated in this work. Ethynyl substituted cyclobutadienes may be involved in Bergman cyclization reactions and are possible intermediates in the formation of fullerenes and graphitic sheets. Prediction of the electronic structure of cyclobutadiene is challenging for single-reference ab initio methods because of Jahn-Teller distortions and the diradical character of the singlet state. The equation-of-motion spin-flip coupled-cluster with single and double excitations (EOM-SF-CCSD) method accurately describes diradical states and is used to determine vertical and adiabatic singlet-triplet energy splittings in the substituted cyclobutadienes. The adiabatic singlet-triplet gaps decrease upon substituent addition, but the singlet states remain lower in energy. However, the results are affected by spin-contamination of the reference state and deteriorate when an unrestricted HF reference is employed. Additional insights in the electronic structure of cyclobutadienes are obtained by analyzing natural charges and spin densities. The substituents pull the charge out of the cyclobutadiene ring; however, the natural charges and spin densities are found to be nearly independent of the geometry and spin state.     

Theoretical studies on the molecular electron densities and electrostatic potentials in azacubanes

Energetics and the charge distributions in azacubanes (C₈NH_8–) have been obtained using the ab initio Hartree–Fock, second-order Mø øller–Plesset perturbation theory and hybrid density functional methods. For diazacubane to hexaazacubane the lowest-energy conformers have nitrogen atoms occupying the face opposite corners of a cube. The topography of the molecular electrostatic potential and the electron density of azacubane conformers have been investigated. The electrostatic potential studies have shown that successive substitution of nitrogen instead of CH groups of cubane engenders smaller and more localized electron-rich regions around the nitrogens of a cube. Further the bond ellipticity and the electron density at the bond critical point of the X–N bonds (X=C or N) in a cubanoid increase from azacubane to octaazacubane. The heats of formation of azacubanes calculated by the isodesmic reaction approach using different levels of theory correlate well with the electron density at the bond critical point of X–N (X=C or N) bonds in a cubanoid.     

Influence of substituents structure and their electronic effects on acid-base and complexing properties of 5,10,15,20-tetranitro-2,3,7,8,12,13,17,18-octaethylporphyrin

5,10,15,20-Tetranitro-2,3,7,8,12,13,17,18-octaethylporphyrin has been prepared, and its acid-basic properties have been studied in acetonitrile by titration with 1,8-diazabicyclo [5.4.0]undec-7-ene and perchloric acid. The substituted porphyrin ability towards complex formation with zinc acetate has been studied in acetonitrile and acetonitrile, 1,8-diazabicyclo [5.4.0]undec-7-ene media. Spectral properties of neutral and ionic forms of 5,10,15,20-tetranitro-2,3,7,8,12,13,17,18-octaethylporphyrin and its zinc complex have been determined; constants of acid and basic ionization of the ligand have been estimated. Kinetic parameters of the porphyrin complex formation with zinc via molecular and ionic mechanism have been analyzed. The substituents effect on the studied properties is discussed.     

Quantitative comparison of molecular electrostatic potentials for structure-activity studies

An approach for representing, efficiently calculating and comparing discrete three-dimensional molecular electrostatic potentials using a quantitative similarity index (MEP-SI) based on a Carbo-type formalism is presented. A radial-type (MACRA) grid representation is described that provides more efficient storage of MEP information than a cubic grid of similar range, appropriate emphasis, and a convenient means for restricting the comparison of MEP functions to a local molecule region. The MACRA based MEP-SI formalism was used to evaluate the suitability of a variety of approximate methods for efficiently calculating the MEP for use in MEP-SI comparison of dissimilar molecules. The Mulliken charge method was found inadequate, while the method of potential-derived charges (PDCs), with additional charges for lone electron pairs included on sulfur, provided an efficient and sufficiently accurate representation of the MEP for this purpose. Convergence of the MEP-SI with respect to MACRA grid extent and mesh size was demonstrated; the effect of MEP error and different grid point emphasis in the MACRA versus the cubic grid results was investigated, and MEP-SI results were compared for different forms of the SI equation. The methodology proposed in this study provides an efficient and practical means for comparing MEP functions for two molecules and gives discriminating results for a sample series of molecular analogues consistent with expectations.     

Suitability of the PM3-derived molecular electrostatic potentials

A systematic study of the suitability of PM3-derived molecular electrostatic potentials (MEPs) is presented. Forty-six MEP minima, 81 electrostatic charges, and 17 electrostatic dipoles were determined at the PM3 level and compared with those obtained from the ab initio 6-31G* wave function, as well as from the semiempirical MNDO and AM1 wave functions. The statistical results of the comparison analysis between semiempirical and ab initio 6-31G* MEPs show that PM3 is in general reliable for the study of the MEP minima but a mediocre method as a source of electrostatic charges. © 1993 John Wiley & Sons, Inc.