Infrared intensity and morphology of l-monolaurin-water systems

The infrared spectra for some metastable states in 1-monolaurin water systems were observed at room temperature, where the relative intensity of bands due to paraffin chains changed considerably, especially in the CH2 rockings, which disappear in some cases. It is considered that the spectral changes result from the morphology change on going from the crystal to the liquid crystal, smectic B phase, so-called gel phase, which consists of the lipid bilayers with ordered paraffin chains alternating with water layers. The model for explaining the intensity change is proposed on the basis of the interaction among oscillating dipoles.     

Crystal structure of 1,10-dibromodecane and its infrared intensity in a urea clathrate and in the crystal

The crystal structure of 1,10-dibromodecane belongs to the monoclinic system and the space group is P2(1)/c with lattice dimensions of a = 5.4574(3) A, b = 5.2814(4) A, c = 21.088(1) A and beta = 92.897(2) degrees and zeta = 2. Infrared spectra of 1,10-dibromodecane in a urea clathrate and in the crystal were observed to investigate the effect of molecular interaction on infrared intensity. The infrared intensity of the CH(2) waggings in the crystalline state is 1.5-1.9 times stronger on the relative basis than that in a urea clathrate, whereas those of CH(2) stretching, CH(2) rocking and CH(2) bending are almost the same in both states. The former enhancement is explained in terms of increase in the bond moment of the C(alpha)H(2) group on the basis of crystal structure and the electrostatic model. The relative intensity of two CH(2) asymmetric stretching changes between the two states. This is also analyzed by the use of the electrostatic model.     

First-principle DFT and MP2 modeling of infrared reflection-absorption spectra of oriented helical ethylene glycol oligomers

First-principle modeling is used to obtain a comprehensive understanding of infrared reflection absorption (RA) spectra of helical oligo(ethylene glycol) (OEG) containing self-assembled monolayers (SAMs). Highly ordered SAMs of methyl-terminated 1-thiaoligo(ethylene glycols) [HS(CH2CH2O)(n)CH3, n = 5, 6] on gold recently became accessible for systematic infrared analyses [Vanderah et al., Langmuir, 2003, 19, 3752]. We utilized the quoted experimental data to validate the first-principle modeling of infrared RA spectra of HS(CH2CH2O)(5,6)CH3 obtained by (i) DFT methods with gradient corrections (using different basis sets, including 6-311++G) and (ii) HF method followed by a M?ller-Plesset (MP2) correlation energy correction. In focus are fundamental modes in the fingerprint and CH-stretching regions. The frequencies and relative intensities in the calculated spectra for a single molecule are unambiguously identified with the bands observed in the experimental RA spectra of the corresponding SAMs. In addition to confirming our earlier assignment of the dominating peak in the CH-stretching region to CH2 asymmetric stretching vibrations, all other spectral features observed in that region have received an interpretation consistent (but not in all cases coinciding) with previous investigations. The obtained results provide an improved understanding of the orientation and conformation of the molecular building blocks within OEG-containing assemblies, which, in our opinion, is crucial for being able to predict the folding and phase characteristics and interaction of OEG-SAMs with water and proteins.     

Infrared and Raman bands of phytantriol as markers of hydrogen bonding and interchain interaction

Hydrogen bonding and interchain interactions in phytantriol, 3,7,11,15-tetramethyl-1,2,3-hexadecanetriol, have been studied by Fourier transform infrared (FT-IR) and Raman spectroscopies. Assignments of the bands were performed based on the OH/OD isotopic substitution, molecular modeling, and measurements of polarized Raman spectra. Marker bands were evaluated from the temperature-dependent spectral changes. It is shown that Raman spectroscopy provides sensitive markers, namely I(delta(CH2))/I(deltas(CH3)), tau(CH)2, I(nus(CH3)(FR))/I(nus(CH2)), and nus(CH2) for probing the interactions between the hydrocarbon chains. Hydrogen bonding interaction might be studied through the difference Raman spectroscopy by the analysis of polarized band at 811 cm-1. Relationship is found between the frequencies of IR bands at 883-873 and 1097-1086 cm-1, associated with the vibrations localized at the primary COH site, and the frequencies of OH stretching mode, making these bands specific markers in the analysis of hydrogen bonding. Evaluated marker bands may be of utility to probe the interchain and hydrogen bonding interaction of phytantriol with guest molecules in the practically important aqueous liquid-crystalline phases of this lipid.     

IR spectroscopy of hydrogen-bonded 2-fluoropyridine-methanol clusters

The electronic and infrared spectra of 2-fluoropyridine-methanol clusters were observed in a supersonic free jet. The structure of hydrogen-bonded clusters of 2-fluoropyridine with methanol was studied on the basis of the molecular orbital calculations. The IR spectra of 2-fluoropyridine-(CH3OH)n(n = 1-3) clusters were observed with a fluorescence-detected infrared depletion (FDIR) technique in the OH and CH stretching vibrational regions. The structures of the clusters are similar to those observed for 2-fluoropyridine-(H2O)n (n = 1-3) clusters. The existence of weak hydrogen bond interaction through aromatic hydrogen was observed in the IR spectra. The theoretical calculation also supports the result. The vibrational frequencies of CH bonds in CH3 group are affected by hydrogen bond formation although these bonds do not directly relate to the hydrogen bond interaction. The B3LYP/6-311 ++G(d,p) calculations reproduce well the vibrational frequency of the hydrogen-bonded OH stretching vibrations. However, the calculated frequency of CH stretching vibration could not reproduce the IR spectra because of anharmonic interaction with closely lying overtone or combination bands for nu3 and nu9 vibrations. The vibrational shift of nu2 vibration is reproduced well with molecular orbital calculations. The calculation also shows that the frequency shift of nu2 vibration is closely related to the CH bond length at the trans position against the OH bond in hydrogen-bonded methanol.     

IRRAS studies on chain orientation in the monolayers of amino acid amphiphiles at the air-water interface depending on metal complex and hydrogen bond formation with the headgroups

Monolayers of N-octadecanoyl-L-alanine at the air-water interface on pure water and metal ion containing subphases have been studied using polarized infrared reflection-absorption spectroscopy (IRRAS). The metal complex and hydrogen bond formation with the headgroups give rise to a change in chain order depending on metal ion in the subphase. On pure water and Ag(+)-/Pb(2+)-containing subphase, the antisymmetric CH(2) stretching band intensity [nu(a)(CH(2))] undergoes a slower increase than the symmetric one [nu(s)(CH(2))] below the Brewster angle, so the intensity ratios of nu(a)(CH(2))/nu(s)(CH(2)) are less than 1 in the cases of Ag(+) and Pb(2+). Beyond the Brewster angle, the nu(a)(CH(2)) band intensities are substantially reduced in comparison with the nu(s)(CH(2)) ones in the cases of pure water and Ag(+), but the nu(a)(CH(2)) bands still remain negative-oriented in the presence of Pb(2+). These unusual spectral features indicate that the alkyl chains take a preferential orientation with their C-C-C planes parallel to the water surface. The parallel packing of the alkyl chains results from the intermolecular hydrogen bonds C=O...H-N between the neighboring amide groups, strengthened by the metal complex of covalent interaction. On the Ca(2+)-/Cu(2+)-containing subphase, the corresponding polarized spectra display a usual behavior. The alkyl chains are roughly estimated to be inclined around 35-40 degrees from the surface normal on the assumption of chain segment orientation for the monolayers in the liquid-expanded phase. The chain conformation and tilt are closely related to the formation of intramolecular hydrogen bonds and the ionic interaction of the metal complex in the cases of Ca(2+) and Cu(2+).     

Infrared absorption of CH3OSO detected with time-resolved Fourier-transform spectroscopy

A step-scan Fourier-transform spectrometer coupled with a multipass absorption cell was employed to detect temporally resolved infrared absorption spectra of CH(3)OSO produced upon irradiation of a flowing gaseous mixture of CH(3)OS(O)Cl in N(2) or CO(2) at 248 nm. Two intense transient features with origins near 1152 and 994 cm(-1) are assigned to syn-CH(3)OSO; the former is attributed to overlapping bands at 1154 ± 3 and 1151 ± 3 cm(-1), assigned to the S=O stretching mixed with CH(3) rocking (ν(8)) and the S=O stretching mixed with CH(3) wagging (ν(9)) modes, respectively, and the latter to the C-O stretching (ν(10)) mode at 994 ± 6 cm(-1). Two weak bands at 2991 ± 6 and 2956 ± 3 cm(-1) are assigned as the CH(3) antisymmetric stretching (ν(2)) and symmetric stretching (ν(3)) modes, respectively. Observed vibrational transition wavenumbers agree satisfactorily with those predicted with quantum-chemical calculations at level B3P86∕aug-cc-pVTZ. Based on rotational parameters predicted at that level, the simulated rotational contours of these bands agree satisfactorily with experimental results. The simulation indicates that the S=O stretching mode of anti-CH(3)OSO near 1164 cm(-1) likely makes a small contribution to the observed band near 1152 cm(-1). A simple kinetic model of self-reaction is employed to account for the decay of CH(3)OSO and yields a second-order rate coefficient k=(4 ± 2)×10(-10) cm(3)molecule(-1)s(-1).     

FT-Raman and photoacoustic infrared spectroscopy of syncrude light gas oil distillation fractions

FT-Raman and photoacoustic (PA) infrared spectra of 12 distillation fractions derived from Syncrude light gas oil (LGO), which has a boiling range from 195 to 343 degrees C, were analyzed in detail in this study. In the fingerprint region (200-1800 cm(-1)) most of the information is obtained from the FT-Raman spectra, which display 36 bands that are assignable to various alkyl or aryl functional groups. Monocyclic, bicyclic and tricyclic aromatics in the 12 fractions were also characterized using Raman bands in this region. The corresponding section of the infrared spectra is much simpler, displaying a relatively small number of bands due to either aromatic or aliphatic CH(n) (n=1, 2 or 3) groups. The Cz.sbnd;H stretching region in both FT-Raman and PA infrared spectra of the LGO distillation fractions was curve-fitted according to procedures established in previous investigations of Syncrude samples with various boiling ranges. The PA spectra of the LGO fractions were also analyzed using an accepted integration strategy that requires no a priori assumptions with regard to the number of constituent bands or their shapes. The curve-fitting results show that the frequencies of the 11 Raman and eight infrared bands used to model the aliphatic ( approximately 2775-3000 cm(-1)) parts of the respective spectra decrease systematically as the median boiling points of the LGO fractions increase. These band positions are consistent with those determined in earlier studies of other distillation fractions. Both curve fitting and integration show that the abundance of CH(2) groups increases at the expense of CH(3) groups as the boiling points of the fractions increase within the LGO region.     

Infrared spectroscopy of ethylene–vinyl chloride copolymers

This paper continues an investigation into the ethylene–vinyl chloride copolymers prepared by partial reduction of poly(vinyl chloride). The infrared spectra of the copolymers have been obtained and the individual resonances assigned. Each infrared band has been quantitatively analyzed in terms of peak position (cm^?1) and intensity, and correlations with the sequence microstructure (dyad, triads, etc.) have been determined. The infrared resonances have been found to be sensitive to long sequences; i.e., (V)_x or (E)_x where x ≥ 10. Sequences of up to 10–15 monomer units were seen to affect the position (cm^?1) and intensity of C? H stretching and bending frequencies. Methylene rocking bands between 850 and 700 cm^?1 were observed to be sequence dependent with ? V(E)_xV? resonanting at 860, 750, or 730 cm^?1 for x = 0, 1 and 2, or ≥3, respectively. The C? Cl stretching resonances, which are well known for their conformational complexity in pure PVC, were found to be dominated by sequence length effects reducing to two bands at 665 and 610 cm^?1 characteristic of and isolated ? CH? Cl unit in a long methylene chain.     

Study of disorder in different phases of tetratriacontane and a binary alkane mixture, using vibrational spectroscopy

Raman spectroscopy has been used to investigate the monoclinic crystal --> rotator --> melt phase transitions in n-C(34)H(70), for both real-time heating and cooling runs. Changes in band intensity and frequency in the CH2 bending, CH2 twisting, skeletal C-C stretching, and CH3 rocking regions revealed both transitions, particularly when using band components related to gauche bonds. In the room temperature infrared spectrum, the CH2 rocking-twisting and CH2 wagging progressions were observed and indexed for n-C(34)H(70) and a 2:1 (w/w) mixture of C(34)H(70) and C(36)D(74). This led to best estimates for the all-trans crystal core in both cases of 33 to 34 carbon atoms, indicating that the core corresponds to almost the whole of the C(34)H(70) molecule.     

FT-Raman and photoacoustic infrared spectroscopy of Syncrude heavy gas oil distillation fractions

FT-Raman and photoacoustic (PA) infrared spectra of six distillation fractions derived from Syncrude heavy gas oil (HGO), which has a boiling range from 343 to 524 degrees C, were analyzed in detail in this study. Most of the information on the fingerprint region (200-1,800 cm(-1)) is provided by the FT-Raman spectra, which display approximately 30 bands that are assignable to functional groups in alkanes or aromatics. Monocyclic, bicyclic and tricyclic aromatics in the six fractions were also monitored using bands in this region. The C-H stretching region in both the FT-Raman and PA infrared spectra of the HGO distillation fractions was analyzed according to a curve-fitting algorithm used in previous investigations of samples with lower boiling points. The PA spectra of the HGO fractions were also analyzed by integration. The curve-fitting results show that the frequencies of the 11 Raman and 8 infrared bands used to model the aliphatic (approximately 2,775-3,000 cm(-1)) parts of the respective spectra are approximately constant across the entire HGO boiling range. These band positions are consistent with the results obtained in earlier studies of other distillation fractions obtained from Syncrude sweet blend. Both curve-fitting and integration show that the respective proportions of CH(2) and CH(3) groups do not vary significantly within the HGO region.     

Infrared and raman studies on the phase structure of barium ethyl(octyl)phosphate-water system

Barium ethyl(alkyl)phosphates, as new simple surfactants ((C₂H₅O)(RO)-PO ₂ ^– )₂Ba²⁺ with various chain length ofR, were synthesized. The infrared spectra in the CH stretching region were measured for these surfactants in the solid state and in aqueous solution, and assignments were made. In particular, the ordering and environment of octyl chains in the different phases of the barium ethyl(octyl)phosphate-water system were studied by the Fourier-transform-infrared and Raman spectra. The CH stretching bands in the infrared spectra reflected the ordering and environment of octyl chains in each phase. The Raman band connected to the PO ₂ ^– symmetric stretching mode was sensitively shifted. This was caused by the change of aggregation structures with different Ba²⁺...PO ₂ ^– interaction. The infrared band arising from the PO ₂ ^– antisymmetric stretching mode was insensitive to the phase structures. The C–C stretching region in the infrared spectra was used to discuss the ordering of each phase.     

Vibrational spectra, DFT calculations, unusual structure, anomalous CH2 wagging and twisting modes, and phase-dependent conformation of 1,3-disilacyclobutane

Our previously published infrared and Raman spectra of 1,3-disilacyclobutane (13DSCB) and its 1,1,3,3-d4 isotopomer have been reexamined and partially reassigned on the basis of DFT and ab initio calculations. The calculations confirm previous microwave work that the CSiC angles in the ring are unexpectedly larger than the SiCSi angles. This may arise from the partial charges on the ring atoms. The calculations are in excellent agreement with the observed spectra in both frequency and intensity. They also demonstrate that this molecule has CH2 wagging and twisting vibrations with frequencies below 1000 cm-1, about 200 cm-1 lower than expected. These unprecedented low values can be explained by the decreased slope in the potential energy curves for these vibrations as the sideways motions of the CH2 groups result in attractive forces between the positively charged hydrogens on the carbon atoms and the negatively charged hydrogens on the silicon atoms. The theoretical calculations also confirm the previous conclusions that the individual molecules (vapor) have C2v symmetry whereas in the solid the molecules become planar with D2h symmetry. The vibrational coupling between the ring-angle bending mode and the SiH2 in-phase rocking, which is present for the C2v structure, is forbidden for D2h and hence disappears.     

CH2Cl2分子中CH的摇摆振动与伸缩和弯曲振动的耦合

Infrared absorption spectra of gaseous CH2Cl2 in the regions of 1200-12000 cm-1 were measured using a Bruker IFS 120HR Fourier transform spectrometer in conjunction with a multipass cell. 47 vibrational levels of overtone and combinational spectral lines of the CH stretching (v1, v6), bending (v2), and rocking(v8) modes were analyzed and assigned. Utilizing the normal mode model and considering the coupling among CH stretching, bending and rocking vibrations, values of the harmonic frequency ωi, the anharmonic constant xij, and the coefficients of Fermi and the Darling-Dennison resonances of v1, v6, v2 and v8 modes were also determined from experimental spectral data with nonlinear least-square fitting. These spectral constants reproduced the experimental levels very well. These results showed that Fermi resonance between CH stretching and rocking vibrations (ki88=-254.63 cm-1) is stronger than that between CH stretching and bending vibrations (k122 = 54.87 cm-1); and that Darling-Dennison resonances between CH stretching and bending vibrations (k1166=-215.28 cm-1) is also much stronger than that between CH bending and rocking vibrations (k2288=-5.72 cm-1).     

Vibrational spectroscopic studies, conformations and ab initio calculations of 3,3,3-trifluoropropyltrichlorosilane

Infrared spectra of 3,3,3-trifluoropropyltrichlorosilane (CF3CH2CH2SiCl3) were obtained in the vapour, amorphous and crystalline solid phases in the range 4000-50 cm-1. Additional spectra in argon matrices at 5.0 K were recorded before and after annealing to 20-36 K. Raman spectra of the compound as a liquid were recorded at various temperatures between 298 and 210 K and spectra of the amorphous and crystalline solids were obtained. The spectra suggested the existence of two conformers (anti and gauche) in the fluid phases and in the matrix. When the vapour was shock-frozen on a cold finger at 80 K and subsequently annealed to 120-150 K, six weak or very weak Raman bands vanished in the crystal. Similar variations were observed in the corresponding infrared spectra after annealing and four very weak IR bands disappeared after crystallization. From intensity variations between 298 and 210 K of three Raman band pairs an average value Delta(conf)H degrees (gauche-anti)=6.1+/-0.5 kJmol-1 was obtained in the liquid. Annealing experiments indicate that the anti conformer also has a lower energy in the argon matrices. The conformational equilibrium is highly shifted towards anti in the liquid, and the low energy conformer also forms the crystal. The spectra of the abundant anti conformer and the few bands ascribed to the gauche conformer have been interpreted. Ab initio calculations at the HF/6-311G(**) and B3LYP/6-311G(**) gave optimized geometries, infrared and Raman intensities and vibrational frequencies for the anti and gauche conformers. The conformational energy differences derived were 11.8 and 9.2 kJmol-1 from the HF and the B3LYP calculations, respectively.     

Raman spectroscopic evidence for the inclusion of decanoate ion in trimethyl-β-cyclodextrin

A method for calibrating Raman intensities of diluted aqueous solutions, based on the integrated intensity of the OH stretching bands of liquid water as an external intensity standard, is described and used to obtain a difference spectrum that reveals intensity changes mainly due to the intermolecular interaction between two solutes. The method is applied to trimethyl-β-cyclodextrin in sodium decanoate aqueous solutions. The difference between the interaction spectra above and below the critical micellar concentration of sodium decanoate, in the CH stretching region between 2700 and 3100 cm⁻¹, shows an intensity increase of the CH stretching bands for trimethyl-β-cyclodextrin above the critical micellar concentration of sodium decanoate, whereas β-cyclodextrin is relatively insensitive to the presence of decanoate ion micelles in aqueous solution.     

FT-IR, FT-Raman and FT-SERS spectra of 4-aminosalicylic acid sodium salt dihydrate.

FT-IR, FT-Raman and FT-SERS spectra of 4-aminosalicylic acid sodium salt dihydrate (4ASAS) have been recorded and analysed. The vibrational bands due to NH2, OH, carboxyl group, and the benzene ring are identified. The CX ipb(17a, 17b), CC ipb(6,18a) and CH ipb (3,14a, 14b) bands are more enhanced in SERS. Broadening of the inplane carboxyl bend indicates interaction with the silver surface. Further the vC=O, v(C-O)c and v(C-O)h are intense in the SERS spectrum. The rocking and wagging modes of NH2 also show up in SERS. The molecule (O, N donor ligand) is thought to adsorb through the carboxyl oxygen atom with the benzene ring in a 'perpendicular side on orientation' with respect to the silver surface.     

Infrared spectroscopy of acetone-hexane liquid mixtures

Acetone and hexane mixtures covering the whole solubility range were studied by Fourier transform infrared attenuated total reflectance spectroscopy. Factor analysis separates the spectra into four principal factor spectra and multiplying factors. Those containing negative factors are abstract, but the spectra are real. A statistical distribution model of the molecules in the solutions rendered the factors real. From these we define the intermediate species that occur in a 1:2 molar ratio of acetone in hexane, present principally in the low acetone concentration regions, and in a 2:1 molar ratio of acetone in hexane, present principally in the higher acetone concentration region. However, except at the concentration range limits where only pure acetone and pure hexane are present, the four species are present over the whole solubility range. The IR spectra of the species indicated very little displacement of the CH stretch bands, HCH deformation bands, and CC stretch bands, although there are some small intensity variations. Most of the modifications are observed on the acetone C=O stretch band. From the gas phase position, a strong bathochromic shift of 19 cm(-1) of the pure liquid is assigned to dipole-dipole interactions. In the 2:1 groupings, the shift that decreases to 15 cm(-1) is due to the diminished dipole-dipole interactions. In the 1:2 groupings, no dipole-dipole interaction can exist, and the bathochromic displacement of 9 cm(-1) is attributed to van der Waals interactions. In the one acetone to two hexanes grouping, no dipole-dipole interaction can exist, and the bathochromic displacement of 9 cm(-1) is attributed to van der Waals interactions. From the statistical distribution of the molecules, we determine that mixtures of hexane and acetone form a random organization with no preferred association or complex.