Redox Couple of DNA on Multiwalled Carbon Nanotube Modified Electrode

It has been envisioned that carbon nanotubes could promote electron‐transfer reactions when used as electrode materials in electrochemical cells. In the present study, calf thymus DNA was electrochemically oxidized at an electrode modified with multiwalled carbon nanotubes. The potentials for DNA oxidation at pH 7.0 were found to be 0.71 and 0.81 V versus SCE, corresponding to the oxidation of guanine and adenine residues, respectively. An initial oxidation of adenine was observed in the first scan, which was followed by a quasi‐reversible redox process of the oxidation product in the subsequent scans.     

Characterization of 2'-deoxyguanosine oxidation products observed in the Fenton-like system Cu(II)/H2O2/reductant in nucleoside and oligodeoxynucleotide contexts

Reactive oxygen species attack both base and sugar moieties in DNA with a preference among the bases for reaction at guanine. In the present study, 2'-deoxyguanosine (dG) was oxidized by a copper-mediated Fenton reaction with the reductants ascorbate or N-acetyl-cysteine, yielding oxidation on both the base and the sugar. The primary oxidized lesions observed in these studies include the 2'-deoxyribonucleosides of 8-oxo-7,8-dihydroguanosine (dOG), spiroiminodihydantoin (dSp), guanidinohydantoin (dGh), oxazolone (dZ), and 5-carboxamido-5-formamido-2-iminohydantoin (d2Ih), as well as the free base guanine. d2Ih was the major product observed in the nucleoside, single- and double-stranded oligodeoxynucleotide contexts and is proposed to arise from oxidation at C5 of guanine. Product distribution studies provide insight into the role of the reductant in partitioning of dG base oxidation along the C5 and C8 pathways.     

Reversible electrochemistry of DNA on multi-walled carbon nanotube modified electrode

Calf thymus DNA was electrochemically oxidized at a multi-walled carbon nanotube modified electrode. The potentials for DNA oxidation at pH 7.0 were 0.71 and 0.81 V versus SCE, corresponding to the oxidation of guanine and adenine residues, respectively. The initial 6e-oxidation of adenine, observed in the first scan, resulted a quasi-reversible 2e-redox process of the oxidation product in the following scans.     

Electrochemical oxidation mechanism of guanine and adenine using a glassy carbon microelectrode.

The electrochemical oxidation mechanism of guanine and adenine was investigated using a glassy carbon microelectrode and cyclic and differential pulse voltammetry. It is pH-dependent and the electron transfer process occurs in consecutive steps with the formation of strongly adsorbed dimers on the electrode surface for both compounds.     

Interaction Between DNA and Some Salicylic Acid Derivatives and Characterization of Their DNA Targets

A nanofiber polypyrrole (PPy) film was electrochemically deposited on a Pt electrode and used for immobilization of single‐stranded DNA (ssDNA) and investigation of hybridization events. Then, the interaction of DNA with four salicylic acid (SA) derivatives was studied with electrochemical methods. The oxidation peak of guanine was decreased by increasing the concentrations of salicylic acid derivatives. The binding constants of these compounds with four different sequences of DNA including different percentages of guanine‐cytosine and adenine‐thymine bases were calculated and it was clarified that sequences with higher percentage of adenine‐thymine bases have a higher binding constant in their interaction with SA derivatives.     

DNA‐Directed Attachment of Carbon Nanotubes for Enhanced Label‐Free Electrochemical Detection of DNA Hybridization

Multi‐walled carbon nanotubes (MWNTs) were used as nanowires, which combined DNA molecules to a carbon paste electrode (CPE). The attachment of MWNT on the electrode surface was controlled by a hybridization assay between adenine and thymine containing oligonucleotides. The appearance of guanine oxidation signal after hybridization with target DNA greatly simplified the specific sequence DNA detection mechanism. Combination of sidewall‐ and end‐functionalization of MWNT provided a significant enhancement in the voltammetric signal of guanine oxidation in comparison with the signals obtained from only end‐oxidized MWNT modified CPE and a bare CPE. A control experiment involving adenine containing polynucleotide (poly(A)) instead of adenine probe modified MWNT was performed. The effect of target and noncomplementary DNA concentration on the guanine signal was also monitored. Discrimination against single‐base mismatch and noncomplementary DNA was achieved by surfactant containing washing solution. The promising conductivity of carbon nanotubes, and the creation of a larger surface area for DNA immobilization by sidewall‐ and end‐oxidation of MWNT provided a detection limit down to 10 pg/mL, which is compatible with the demand of the genetic tests.     

Electrochemical behavior of natural and biosynthetic polynucleotides at the pyrolytic graphite electrode A new probe for studies of polynucleotide structure and reactions

The electrochemical oxidation of natural and biosynthetic polynucleotides at a pyrolytic graphite electrode (PGE) has been studied under differential pulse voltammetric conditions. Denatured DNA, ribosomal and transfer RNA give two voltammetric peaks. The first (more negative peak, peak G) corresponds to electrochemical oxidation of guanine residues where-as the second, more positive peak (peak A) corresponds to electrochemical oxidation of adenine residues. Native DNA gives rise only to a small peak A, peak G being totally absent. Denatured DNA and its voltammetric oxidation product are both strongly adsorbed at the PGE. Differential pulse voltammetric oxidation of natural and biosynthetic polynucleotides may provide a valuable technique for probing A-T and G-C regions during structural and conformational changes of these molecules and for following their interactions with other solution species.     

A DNA-electrochemical biosensor for screening environmental damage caused by s-triazine derivatives

An electrochemical DNA-biosensor has been used to investigate the interactions between DNA and members of a group of ten derivatives of 1,3,5-triazine herbicides: chloro-s-triazines (atrazine, propazine, terbutylazin, and cyanazin), thiomethyl-s-triazines (ametryn, prometryn, terbutryn, and simetryn), and methoxy-s-triazines (prometon and terbumeton). A UV spectrophotometric study of this group of herbicides was also undertaken. Of this group only cyanazin could be oxidized in aqueous solution using a glassy carbon electrode. Use of the electrochemical DNA-biosensor revealed the occurrence of a time-dependent interaction of all the herbicides with DNA, via the appearance of guanine, guanosine, and adenosine oxidation signals that correspond to DNA damage. Adduct formation between the herbicide and the DNA purine bases guanine and adenine is suggested as a mechanism.     

Density Functional Theory Studies on the Oxidation of 5'-dGMP and 5'-dAMP by a Platinum(IV) Complex

Density functional theory has been used to investigate the oxidation of a guanine nucleotide by platinum(IV), a process that can be important in the degradation of DNA. For the first time, we have provided a comprehensive mechanism for all of the steps in this process. A number of intermediates are predicted to occur but with short lifetimes that would make them difficult to observe experimentally. A key step in the mechanism is electron transfer from guanine to platinum(IV), and we show that this is driven by the loss of a chloride ligand from the platinum complex after nucleophilic attack of 5'-phosphate to C8 of guanine. We have investigated several different initial platinum(IV) guanine adducts and shown that the adduct formed from replacement of an axial chlorine ligand in the platinum(IV) complex undergoes oxidation more easily. We have studied adenine versus guanine adducts, and our results show that oxidation of the former is more difficult because of disruption of the aromatic π system that occurs during the process. Finally, our results show that the acidic hydrolysis step to form the final oxidized product occurs readily via an initial protonation of N7 of the guanine.     

Novel electrochemical sensor based on functionalized graphene for simultaneous determination of adenine and guanine in DNA

A nano-material carboxylic acid functionalized graphene (graphene-COOH) was prepared and used to construct a novel biosensor for the simultaneous detection of adenine and guanine. The direct electrooxidation behaviors of adenine and guanine on the graphene-COOH modified glassy carbon electrode (graphene-COOH/GCE) were carefully investigated by cyclic voltammetry and differential pulse voltammetry. The results indicated that both adenine and guanine showed the increase of the oxidation peak currents with the negative shift of the oxidation peak potentials in contrast to that on the bare glassy carbon electrode. The electrochemical parameters of adenine and guanine on the graphene-COOH/GCE were calculated and a simple and reliable electroanalytical method was developed for the detection of adenine and guanine, respectively. The modified electrode exhibited good behaviors in the simultaneous detection of adenine and guanine with the peak separation as 0.334V. The detection limit for individual determination of guanine and adenine was 5.0×10(-8)M and 2.5×10(-8)M (S/N=3), respectively. Furthermore, the measurements of thermally denatured single-stranded DNA were carried out and the value of (G+C)/(A+T) of single-stranded DNA was calculated as 0.80. The biosensor exhibited some advantages, such as simplicity, rapidity, high sensitivity, good reproducibility and long-term stability.     

基于BCNTs/GC电极的鸟嘌呤与腺嘌呤电化学行为及其同时检测

利用掺硼碳纳米管（BCNTs）/GC电极研究了鸟嘌呤（G）和腺嘌呤（A）的电化学氧化行为. 与GC和CNTs/GC电极相比,BCNTs/GC电极具有更强的电催化活性,且响应电流明显增加. 两混合样品在BCNTs/GC电极上的氧化峰间隔较大,可实现对A和G的同时检测.     

Electrochemical oxidation of underivatized-nucleic acids at highly boron-doped diamond electrodes

Boron-doped diamond (BDD) electrodes have been examined for the electrochemical oxidation of underivatized-nucleic acids in terms of single stranded and double stranded DNA. Cyclic voltammetry and square wave voltammetry have been used to study the oxidation reactions and to detect DNA without derivatization or hydrolysis steps. At the diamond electrode, at least two well-defined voltammetric peaks were observed for both single stranded and double stranded DNA. Diamond electrode is the first material to show a well-defined voltammetric peaks for adenine group oxidation directly in the helix structure of nucleic acid due to its wide potential window. For single stranded DNA, a third peak, related to the pyrimidine group oxidation was also observed. As-deposited diamond film with predominantly hydrogen-terminated surface exhibited superior performance over oxygen-terminated diamond in terms of sensitivity. However, by optimizing the ionic strength, sensitivity of O-terminated films could be improved. Linear calibration results have shown linearity of current with concentration in the range 0.1-8 microg mL(-1) for both guanine and adenine residues at as-deposited BDD. Detection limits (S/N = 3) of 3.7 and 10 ng mL(-1) for adenine and guanine residue in single stranded DNA, respectively, and 5.2 and 10 ng mL(-1) for adenine and guanine residue in double stranded DNA, respectively, were observed. This work shows the promising use of diamond as an electrochemical detector for direct detection of nucleic acids. The results also show the possibility of using the oxidation peak current of adenine group that is more sensitive for the direct detection of nucleicacids.     

Structural and electronic property changes of the nucleic acid bases upon base pair formation

A systematic study of structures and electronic properties has been carried out for the nucleic acid bases adenine, guanine, thymine, and cytosine and for the base pairs adenine–thymine and guanine–cytosine. We focus our attention on these properties, which experience significant changes when single nucleic bases join to form base pairs. Such properties are expected to play an important role during the formation of the DNA molecule in its B conformation. All-electron calculations with inclusion of correlation effects were performed according to the local and nonlocal density functional approaches. We compare our results with previous ab initio and semiempirical values and with available experimental data. Advantages and disadvantages for these density functional-based methods are discussed. We conclude that applications of such models to investigate larger compounds of a similar nature are promising. © 1994 by John Wiley & Sons, Inc.     

Direct electrochemistry of DNA,guanine and adenine at a nanostructured film-modified electrode

A nanostructured film electrode, a multi-wall carbon nanotubes (MWNT)-modified glassy carbon electrode (GCE), is described for the simultaneous determination of guanine and adenine. The properties of the MWNT-modified GCE were investigated by scanning electron microscopy (SEM) and cyclic voltammetry. The oxidation peak currents of guanine and adenine increased significantly at the MWNT-modified GCE in contrast to those at the bare GCE. The experimental parameters were optimized and a direct electrochemical method for the simultaneous determination of guanine and adenine was proposed. Using the MWNT-modified GCE, a sensitive and direct electrochemical technique for the measurement of native DNA was also developed, and the value of (G+C)/(A+T) of HCl-digested DNA was detected.     

Electrocatalytic properties of guanine, adenine, guanosine-5'-monophosphate, and ssDNA by Fe(II) bis(2,2':6',2'-terpyridine), Fe(II) tris(1,10-phenanthroline), and poly-Fe(II) tris(5-amino-1,10-phenanthroline)

The electrocatalytic oxidations of guanine, adenine, guanosine-5'-monophosphate(GMP) and ssDNA were performed in the presence of Fe(II) bis(2,2':6',2'-terpyridine) and Fe(II) tris(1,10-phenanthroline) complexes as homogeneous catalysts by cyclic voltammetric methods. The Fe(II/III) redox couple of these compounds is responsible for their catalytic properties. The electrocatalytic oxidation current of above substrates were developed from the anodic peak currents of Fe(II) bis(2,2':6',2'-terpyridine) and Fe(II) tris(1,10-phenanthroline) complexes at about +0.93 V and 0.97 V, respectively. The electrocatalytic oxidative properties of guanine by Fe(II) bis(2,2':6',2'-terpyridine) complex was measured by amperometry method using the rotating disk electrodes. Electropolymerization of Fe(II) tris(5-amino-1,10-phenanthroline) complex produced thin polymer films on gold and glassy carbon electrodes. The electrochemical quartz crystal microbalance (EQCM) and cyclic voltammetry were used to study the in situ growth of the polymer. The poly(FeII(5-NH(2)-1,10-phen)(3)) exhibited a good electrocatalytic oxidation towards guanine and also for the mixture of guanine and adenine too.     

An Electrochemical Sensor Based on Gold Nanoparticles Incorporated in Mesoporous MFI Zeolite for Determination of Purine Bases in DNA

An electrochemical sensor was developed based on gold nanoparticles incorporated in mesoporous MFI zeolite for the determination of purine bases. Au nanoparticles (AuNPs) were incorporated into the mesoporous MFI zeolite (AuNPs/m‐MFI) by post‐grafting reaction. The composite materials were characterized by transmission electron microscopy (TEM), X‐ray photoelectron spectroscopy (XPS) and electrochemical methods. Au nanoparticles with a size of 5‐20 nm are uniformly dispersed in the pores of mesoporous MFI zeolite. And the morphology of MFI zeolite can be perfectly kept after pore expansion and Au nanoparticles incorporation. The electrocatalytic oxidation of purine bases (guanine and adenine in DNA) is investigated by cyclic voltammetry (CV) and differential pulse voltammetry (DPV). The surface‐confined Au nanoparticles provide the good catalytic activity for oxidation of purine bases. The simultaneous detection of guanine and adenine can be achieved at AuNPs/m‐MFI composites modified glassy carbon electrode (GCE). The electrochemical sensor based on AuNPs/m‐MFI exhibits wide linear range of 0.5–500 μM and 0.8–500 μM with detection limit of 0.25 and 0.29 μM for guanine and adenine, respectively. Moreover, the electrochemical sensor is applied to evaluation of guanine and adenine in herring sperm DNA samples with satisfactory results.     

氧化石墨烯修饰碳离子液体电极同时测定鸟嘌呤和腺嘌呤

以离子液体1-丁基-3-甲基咪唑六氟磷酸盐为粘合剂制备了碳糊电极,然后将氧化石墨烯滴涂到碳糊电极表面制成了一种新型的氧化石墨烯修饰碳离子液体电极。研究了鸟嘌呤和腺嘌呤在修饰电极上的电化学行为。实验结果表明,在0.1 mol/L醋酸盐缓冲溶液中(pH4.5),鸟嘌呤和腺嘌呤在该修饰电极上具有良好的电化学行为,在2.0×10-7～1.5×10-5mol/L浓度范围内鸟嘌呤和腺嘌呤的浓度在该电极上与电化学响应信号呈良好的线性关系,相关系数分别为为0.992和0.996。信噪比为3时,检出限为1.0×10-8mol/L。     

Electrochemical biosensor for simultaneous determination of guanine and adenine based on dopamine-melanin colloidal nanospheres–graphene composites

Dopamine-melanin colloidal nanospheres (Dpa-melanin CNDs)–graphene composites-modified glassy carbon electrode (GCE) was prepared by a simple procedure and then successfully used to simultaneously determine guanine and adenine. Scanning electron microscopy (SEM) images and transmission electron microscopy (TEM) were used to characterize the morphology of the Dpa-melanin CNSs–graphene composite. Cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS) were used to characterize the electrode modifying process. Differential pulse voltammetry (DPV) was used to study the electrocatalytic activity toward the electrochemical oxidation of guanine and adenine. The modified electrode exhibited enhanced electrocatalytic behavior and good stability for the simultaneous determination of guanine and adenine compared with bare GCE. The electrochemical biosensor exhibited wide linear range of 0.5 to 150 μM with detection limit of 0.05 and 0.03 μM for guanine and adenine detection (S/N?=?3), respectively. Furthermore, the biosensor showed high sensitivity, good selectivity, good reproducibility, and long-term stability to guanine and adenine detection. At the same time, the fabricated electrode was successfully applied for the determination of guanine and adenine in denatured DNA samples with satisfying results. These results demonstrated that Dpa-melanin CNSs–graphene composite was a promising substrate for the development of high-performance electrochemical biosensor.     

Fabrication of Cu−CeO2 Coated Multiwall Carbon Nanotube Composite Electrode for Simultaneous Determination of Guanine and Adenine

A copper nano particles and cerium (IV) oxide modified carbon nanotube based composite on glassy carbon electrode (Cu−CeO₂/MWCNT/GCE) was fabricated for simultaneous determination of guanine and adenine. The surface morphology, chemistry and conductance of the prepared electrodes were characterized by scanning electron microscopy (SEM), energy dispersion X‐ray (EDX), X‐Ray photoelectron spectroscopy (XPS) and electrochemical impedance spectroscopy (EIS). The Cu−CeO₂/MWCNT/GCE improved electrochemical behaviour of guanine and adenine compared to other electrodes. The modified electrode was also used for individual and simultaneous determination of guanine and adenine. Under optimized conditions, the calibration curves were obtained linearly in the range of 0.20 to 6.00 μM for the guanine and 0.10 to 8.0 μM for the adenine by differential pulse voltammetry. The limits of detection of guanine and adenine were calculated as 0.128 and 0.062 μM, respectively. Interferences studies were also performed in the presence of inorganic and organic compounds. Moreover, the determination of guanine and adenine contents were carried out in a calf thymus DNA sample by the developed method with satisfactory results.     

Adsorption and oxidation of purine bases and their derivatives on electrodes modified with carbon nanotubes

The electrochemical behavior of nitrogen bases and their derivatives is studied on electrodes modified with carbon nanotubes. On these electrodes, the strong adsorption of purines and their oxidation is observed at potentials in the vicinity of +0.8 V for guanine and +1.0 V (vs. Ag/AgCl) for guanine nucleosides/nucleotides and adenine. At more positive potentials, the high background current prevents the detection of adenine nucleotides and pyrimidines. The peculiarities of oxidation of the most easily detectable DNA components, namely, guanine and deoxyguanosinemonophosphate, on modified electrodes are elucidated and the corresponding reaction scheme is proposed. The results can be used in the development of biosensors based on electroactive properties of nucleic acids and their components.