Electrochemical impedance spectroscopy and surface plasmon resonance studies of DNA hybridization on gold/SiOx interfaces

The use of Au/SiO(x) interfaces for the investigation of DNA hybridization using electrochemical impedance spectroscopy (EIS) and surface plasmon resonance (SPR) simultaneously is demonstrated. Standard glass chemistry was used to link single-stranded DNA (ss-DNA) on aldehyde-terminated Au/SiO(x) interfaces. The layer thickness and amount of grafted oligonucleotides (ODNs) were calculated from SPR on the basis of a multilayer system of glass/Ti/Au/SiO(x)/grafted molecule. Capacitance and resistance values of the modified interface before and after hybridization were calculated from EIS data using an equivalent circuit and allowed the affinity rate constant, K(A) = 4.07 x 10(5) M(-1), to be determined. The EIS results were comparable to those obtained by SPR hybridization kinetics recorded in parallel.     

Highly sensitive electrochemical impedance spectroscopic detection of DNA hybridization based on Aunano-CNT/PANnano films

A polyaniline nanofibers (PAN_nano)/carbon paste electrode (CPE) was prepared via dopping PAN_nano in the carbon paste. The nanogold (Au_nano) and carbon nanotubes (CNT) composite nanoparticles were bound on the surface of the PAN_nano/CPE. The immobilization and hybridization of the DNA probe on the Au_nano-CNT/PAN_nano films were investigated with differential pulse voltammetry (DPV) and cyclic voltammetry (CV) using methylene blue (MB) as indicator, and electrochemical impedance spectroscopy (EIS) using [Fe(CN)₆]^3−/4− as redox probe. The voltammetric peak currents of MB increased dramatically owing to the immobilization of the probe DNA on the Au_nano-CNT/PAN_nano films, and then decreased obviously owing to the hybridization of the DNA probe with the complementary single-stranded DNA (cDNA). The electron transfer resistance (R_et) of the electrode surface increased after the immobilization of the probe DNA on the Au_nano-CNT/PAN_nano films and rose further after the hybridization of the probe DNA. The remarkable difference between the R_et value at the DNA-immobilized electrode and that at the hybridized electrode could be used for the label-free EIS detection of the target DNA. The loading of the DNA probe on Au_nano-CNT/PAN_nano films was greatly enhanced and the sensitivity for the target DNA detection was markedly improved. The sequence-specific DNA of phosphinothricin acetyltransferase (PAT) gene and the polymerase chain reaction (PCR) amplification of nopaline synthase (NOS) gene from transgenically modified beans were determined with this label-free EIS DNA detection method. The dynamic range for detecting the PAT gene sequence was from 1.0 × 10⁻¹² mol/L to 1.0 × 10⁻⁶ mol/L with a detection limit of 5.6 × 10⁻¹³ mol/L.     

DNA与金属锇配合物相互作用的表面电化学研究

采用自己建立的DNA表面电化学研究微量方法, 研究了单双链DNA与两种锇配合物(联吡啶锇和二氯菲咯啉锇)的相互作用. 研究发现, 两种锇配合物都是通过静电作用与DNA结合, 其作用方式不受溶液离子强度的影响. 并计算得到了联吡啶锇和二氯菲咯啉锇与dsDNA和ssDNA相互作用的多个热力学和动力学参数, 如结合常数K_3＋或K_2＋, 结合常数比K_3＋/K_2＋, 离子强度为零时的极限比 , 结合自由能ΔG_b, 解离速度常数k, 结合位点数s.     

Determination of pK a of benzoic acid- and p-aminobenzoic acid-modified platinum surfaces by electrochemical and contact angle measurements

Acidity constant values of benzoic acid (BA)-modified platinum electrode (Pt-BA) and p-aminobenzoic acid (pABA)-modified platinum electrode (Pt-NHBA) surfaces were determined using cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS), and contact angle measurements (CAM). Diazonium tetrafluoroborate salt reduction and pABA oxidation reactions were used to prepare (Pt-BA) and (Pt-NHBA) surfaces, respectively. Both surfaces exhibited pH dependence with [Fe(CN)₆]^3?/4? redox probe solutions at different pH; this allowed us to estimate the surface pK _a values. Acidity constants for Pt-BA surface were found to be pK _a (3.09 ± 0.25), (4.89 ± 0.11), and (3.91 ± 0.54) by CV, EIS, and CAM techniques, respectively, while the values for Pt-NHBA surface were pK _a (3.16 ± 0.45), (4.24 ± 0.40), and (5.64 ± 0.12). The Pt-BA surface pK _a values were lower in CV and CAM measurements relative to the bulk solution of BA, while a higher value was observed in EIS for Pt-BA surface. The pK _a values determined for Pt-NHBA surface via both CV and EIS were lower than the bulk value; however, the result obtained from CAM was one unit higher than pK _a of bulk pABA.     

Electrochemical Biosensor Based on Carbon Ionic Liquid Electrode Modified with Nafion/Hemoglobin/DNA Composite Film

A new electrochemical biosensor was constructed by immobilization of hemoglobin (Hb) on a DNA modified carbon ionic liquid electrode (CILE), which was prepared by using 1‐ethyl‐3‐methylimidazolium tetrafluoroborate (EMIMBF₄) as the modifier. UV‐vis absorption spectroscopic result indicated that Hb remained its native conformation in the composite film. The fabricated Nafion/Hb/DNA/CILE was characterized by scanning electron microscopy (SEM), electrochemical impedance spectroscopy (EIS) and cyclic voltammetry (CV). A pair of well‐defined redox peaks was obtained on the modified electrode, indicated that the Nafion and DNA composite film provided an excellent biocompatible microenvironment for keeping the native structure of Hb and promoting the direct electron transfer rate of Hb with the basal electrode. The electrochemical parameters of Hb in the composite film were further calculated with the results of the charge transfer coefficient (α) and the apparent heterogeneous electron transfer rate constant (k_s) as 0.41 and 0.31 s^?1. The proposed electrochemical biosensor showed good electrocatalytic response to the reduction of trichloroacetic acid (TCA), H₂O₂, NO and the apparent Michaelis–Menten constant (K_M^app) for the electrocatalytic reaction was calculated, respectively.     

Label-Free Detection of DNA Hybridization Based on MnO2 Nanoparticles

Abstract

Nano-MnO₂/chitosan composite film modified glassy carbon electrode (MnO₂/CHIT/GCE) was fabricated and a DNA probe was immobilized on the electrode surface. The immobilization and hybridization events of DNA were characterized by cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The EIS was applied to the label-free detection of the target DNA. The human immunodeficiency virus (HIV) gene fragment was successfully detected by this DNA electrochemical sensor. The dynamic detection range was from 2.0 × 10^?11 to 2.0 × 10^?6 mol/L, with a detection limit of 1.0 × 10^?12 mol/L.     

Multi-wall carbon nanotubes (MWCNTs)-doped polypyrrole DNA biosensor for label-free detection of genetically modified organisms by QCM and EIS

In this paper, we describe DNA electrochemical detection for genetically modified organism (GMO) based on multi-wall carbon nanotubes (MWCNTs)-doped polypyrrole (PPy). DNA hybridization is studied by quartz crystal microbalance (QCM) and electrochemical impedance spectroscopy (EIS). An increase in DNA complementary target concentration results in a decrease in the faradic charge transfer resistance (R_ct) and signifying “signal-on” behavior of MWCNTs-PPy-DNA system. QCM and EIS data indicated that the electroanalytical MWCNTs-PPy films were highly sensitive (as low as 4 pM of target can be detected with QCM technique). In principle, this system can be suitable not only for DNA but also for protein biosensor construction.     

Label-free and sequence-specific DNA detection down to a picomolar level with carbon nanotubes as support for probe DNA

This study describes a simple and label-free electrochemical impedance spectroscopic (EIS) method for sequence-specific detection of DNA by using single-walled carbon nanotubes (SWNTs) as the support for probe DNA. SWNTs are confined onto gold electrodes with mixed self-assembly monolayers of thioethanol and cysteamine. Single-stranded DNA (ssDNA) probe is anchored onto the SWNT support through covalent binding between carboxyl groups at the nanotubes and amino groups at 5′ ends of ssDNA. Hybridization of target DNA with the anchored probe DNA greatly increases the interfacial electron-transfer resistance (R_et) at the double-stranded DNA (dsDNA)-modified electrodes for the redox couple of Fe(CN)₆^3−/4−, which could be used for label-free and sequence-specific DNA detection. EIS results demonstrate that the utilization of SWNTs as the support for probe DNA substantially increases the surface loading of probe DNA onto electrode surface and thus remarkably lowers the detection limit for target DNA. Under the conditions employed here, R_et is linear with the concentration of target DNA within a concentration range from 1 to 10 pM with a detection limit down to 0.8 pM (S/N = 3). This study may offer a novel and label-free electrochemical approach to sensitive sequence-specific DNA detection.     

Towards understanding of protein adsorption behavior on plasma polymerized pyrrole film

Plasma polymerized pyrrole-like (PPpy) films exhibit good environmental stability and offer high reactivity with biomolecules. The present paper follows on from previous work on PPpy films applied as DNA immobilization/hybridization and describes the adsorption kinetics of bovine serum albumin (BSA) on PPpy films. Atom force microscopy was used to detect the surface roughness of PPpy surfaces obtained at different input powers or for different polymerization time, including the surface roughness before and after BSA adsorption. The influence of experimental conditions (i.e., the plasma input power, the polymerization time, the concentration of BSA, and the pH values of buffer solutions) on protein adsorption was investigated in situ by Surface plasmon resonance spectroscopy (SPR). SPR analysis confirmed the differently dynamic adsorption behavior of BSA on PPpy films under various experimental conditions. The adsorption constant, K _a , was deduced from Langmuir isotherm equations, which were simulated using experimental data collected by SPR and electrochemical impedance spectroscopy (EIS). Analysis of the combination data of SPR and EIS indicates that PPpy films under various conditions show completely different adsorption behaviors and could be applied as biomaterials for electrochemical protein sensing or as protein-resistant.      

The initial oxidative polymerization kinetics of 2,6-dimethylphenol with a Cu-EDTA complex in water

The initial oxidative polymerization kinetics of 2,6-dimethylphenol (DMP) catalyzed by a Cu(II)-EDTA complex in water was studied. The initial polymerization rate of DMP (R₀) increases with an increase in concentrations of DMP and catalyst. R₀ firstly increases with the molar ratio of N/Cu and then decreases. The reaction order with respect to oxygen is 0.1. R₀ increases with NaOH concentration and reaches its maximum value at a concentration of 0.50 mol/L. 1/R₀ is in direct proportion to 1/[DMP]₀, which indicates that the initial polymerization kinetics of DMP in water obeys Michaelis-Menten model. The dissociation rate constant of the intermediate complex (k₂) and Michaelis-Menten constant (K_m) at various temperatures are calculated. It is found that both k₂ and K_m increase with an increase in temperature.     

Nano Au/TiO2 hollow microsphere membranes for the improved sensitivity of detecting specific DNA sequences related to transgenes in transgenic plants

Gold nanoparticles (nano Au)/titanium dioxide (TiO₂) hollow microsphere membranes were prepared on the carbon paste electrode (CPE) for enhancing the sensitivity of DNA hybridization detection. The immobilization of nano Au and TiO₂ microsphere was investigated with cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The hybridization events were monitored with EIS using [Fe(CN)₆]^3?/4? as indicator. The sequence-specific DNA of the 35S promoter from cauliflower mosaic virus (CaMV35S) gene was detected with this DNA electrochemical sensor. The dynamic detection range was from 1.0×10^?12 to 1.0×10^?8 mol/L DNA and a detection limit of 2.3×10^?13 mol/L could be obtained. The polymerase chain reaction (PCR) amplification of the terminator of nopaline synthase (NOS) gene from the real sample of a kind of transgenic soybean was also satisfactorily detected.     

Voltammetric and spectroscopic investigations of 4-nitrophenylferrocene interacting with DNA

Cyclic voltammetry (CV) coupled with UV–vis and fluorescence spectroscopy were used to probe the interaction of potential anticancer drug, 4-nitrophenylferrocene (NFC) with DNA. The electrostatic interaction of the positively charged NFC with the anionic phosphate of DNA was evidenced by the findings like negative formal potential shift in CV, ionic strength effect, smaller bathochromic shift in UV–vis spectroscopy, incomplete quenching in the emission spectra and decrease in viscosity. The diffusion coefficients of the free and DNA bound forms of the drug were evaluated from Randles–Sevcik equation. The binding parameters like binding constant, ratio of binding constants (K_red/K_ox), binding site size and binding free energy were determined from voltammetric data. The binding constant was also determined from UV–vis and fluorescence spectroscopy with a value quite close to that obtained from CV.     

Immobilization and hybridization of DNA based on magnesium ion modified 2,6-pyridinedicarboxylic acid polymer and its application for label-free PAT gene fragment detection by electrochemical impedance spectroscopy

A new approach for a simple electrochemical detection of PAT gene fragment is described. Poly(2,6-pyridinedicarboxylic acid) (PDC) modified glassy carbon electrode (GCE) was prepared by potential scan electropolymerization in an aqueous solution. Mg2 ions were incorporated by immer-sion of the modified electrode in 0.5 mol/L aqueous solution of MgCl2 to complete the preparation of a generic "activated" electrode ready for binding the probe DNA. The ssDNA was linked to the conduct-ing polymer by forming a bidentate complex between the carboxyl groups on the polymer and the phosphate groups of DNA via Mg2 . DNA immobilization and hybridization were characterized with dif-ferential pulse voltammetry (DPV) by using methylene blue (MB) as indicator and electrochemical im-pedance spectroscopy (EIS). The EIS was of higher sensitivity for DNA detection as compared with voltammetric methods in our strategy. The electron transfer resistance (Ret) of the electrode surface in EIS in [Fe(CN)6]3-/4- solution increased after the immobilization of the DNA probe on the Mg/PDC/GCE electrode. The hybridization of the DNA probe with complementary DNA (cDNA) made Ret increase further. The difference between the Ret at ssDNA/Mg/PDC/GCE and that at hybridization DNA modified electrode (dsDNA/Mg/PDC/GCE) was applied to determine the specific sequence related to the target PAT gene with the dynamic range comprised between 1.0 × 10-9 and 1.0 × 10_5 mol/L. A detection limit of 3.4 × 10-10 mol/L of oligonucleotides can be estimated.     

Hydrolysis of palm kernel olein in AOT-isooctane-water reversed micelles

Rhizopus arrhizus lipase (EC 3.1.1.3; triacylglycerol hydrolase) was used in this study to investigate the hydrolysis of palm kernel olein in AOT-isooctane-water reversed micelle system at W_o = 13, pH = 7, and T = 30?C. The hydrolytic reaction obeys Michaelis-Menten kinetics for substrate concentrations in the range (0.175 and 0.877M). The apparentK _m and V_max for the substrate were 0.397M (equivalent to 9.06% w/v) and 5523 U/mg protein, respectively. Product inhibition with a dissociation constant of the enzyme-product complex,K _I = 9.74 mM, was confirmed. Experimental results from the change of product concentrations with respect to time correlated sufficiently with those predicted theoretically from the rate equation for a reaction time up to 100 min. However, the discrepancy between the observed results and the predicted ones would increase with reaction time. Possible reasons for this deviation were discussed.     

Actinomycin D binds to single stranded DNA oligomers which contain double GTC triplets

The present work carried out a study on the interactions between Actinomycin D (ActD) and some single-stranded DNA oligomers, which contain double GTC triplets separated by TTT sequence. The interactions of drugs with DNA oligomers were investigated by UV, circular dichroism (CD) spectroscopy and isothermal titration calorimetry (ITC). The results indicate that ActD binds to the single stranded DNA oligomers in the fold back binding model as supported by added A/T base at DNA strand terminal which facilitates the formation of hairpin. The apparent binding constant K_b, the apparent binding molar enthalpy ΔH⁰ and other thermodynamic data were obtained. The binding affinities are sequence dependent and related to the length of DNA strand. And the higher molar binding enthalpy indicates that the binding process is enthalpy driven.     

Nano Au/TiO2 hollow microsphere membranes for the improved sensitivity of detecting specific DNA sequences related to transgenes in transgenic plants

Gold nanoparticles (nano Au)/titanium dioxide (TiO₂) hollow microsphere membranes were prepared on the carbon paste electrode (CPE) for enhancing the sensitivity of DNA hybridization detection. The immobilization of nano Au and TiO₂ microsphere was investigated with cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The hybridization events were monitored with EIS using [Fe(CN)₆]^3−/4− as indicator. The sequence-specific DNA of the 35S promoter from cauliflower mosaic virus (CaMV35S) gene was detected with this DNA electrochemical sensor. The dynamic detection range was from 1.0×10⁻¹² to 1.0×10⁻⁸ mol/L DNA and a detection limit of 2.3×10⁻¹³ mol/L could be obtained. The polymerase chain reaction (PCR) amplification of the terminator of nopaline synthase (NOS) gene from the real sample of a kind of transgenic soybean was also satisfactorily detected. Supported by the National Natural Science Foundation of China (Grant Nos. 20635020 and 20375020), Doctoral Foundation of the Ministry of Education of China (Grant No. 20060426001) and Natural Science Foundation of Qingdao City (Grant No. 04-2-JZP-8)     

Tin oxide nanoparticles-polymer modified single-use sensors for electrochemical monitoring of label-free DNA hybridization

In this study, SnO₂ nanoparticles (SNPs)-poly(vinylferrocenium) (PVF⁺) modified single-use graphite electrodes were developed for electrochemical monitoring of DNA hybridization. The surfaces of polymer modified and polymer-SNP modified pencil graphite electrodes (PGEs) were firstly characterized by using SEM analysis. The electrochemical behaviours of these electrodes were also investigated using the differential pulse voltammetry (DPV) and electrochemical impedance spectroscopy (EIS) techniques. The polymer-SNP modified PGEs were then tested for the electrochemical sensing of DNA based on the changes at the guanine oxidation signals. Experimental parameters, such as; different modifications in DNA oligonucleotides, DNA probe concentrations were examined to obtain more sensitive and selective electrochemical signals for nucleic acid hybridization. After optimization studies, DNA hybridization was investigated in the case of complementary of hepatitis B virus (HBV) probe, mismatch (MM), and noncomplementary (NC) sequences.     

Simultaneous high-throughput determination of interaction kinetics for drugs and cyclodextrins by high performance affinity chromatography with mass spectrometry detection

The individual determination of the apparent dissociation rate constant (k_d,app) using high performance affinity chromatography (HPAC) is a tedious process requiring numerous separate tests and massive data fitting, unable to provide the apparent association rate constant (k_a) and equilibrium binding constant (K_a). In this study, a HPAC with mass spectrometry detection (HPAC-MS/MS) was employed to determine the drug-cyclodextrin (CD) interaction kinetics with low sample loading quantity (<10 ng per injection for single compound) and high-throughput yield as twenty drugs determined in one injection. The k_d,app measured by HPAC-MS/MS approach were 0.89 ± 0.07, 4.34 ± 0.01, 1.48 ± 0.01 and 7.77 ± 0.04 s⁻¹ for ketoprofen, trimethoprim, indapamide and acetaminophen, with k_d,app for acetaminophen consistent with that from the HPAC method with UV detector in our previous studies. For twenty drugs with diverse structures and chemical properties, good correlationship was found between k_d,app measured by single compound analysis method and high-throughput HPAC-MS/MS approach, with the correlation coefficient of 0.987 and the significance F less than 0.001. Comprehensive quantification of k_a,app, k_d,app and K_a values was further performed based on the measurement of k_d,app by peak profiling method and K_a by the peak fitting method. And the investigation of the drug-CD interaction kinetics under different conditions indicated that the column temperature and mobile phase composition significantly affected the determination of k_a,app, k_d,app and K_a while also dependent on the acidity and basicity of drugs. In summary, the high-throughput HPAC-MS/MS approach has been demonstrated high efficiency in determination of the drug-CD primary interaction kinetic parameter, especially, k_d,app, being proven as a novel tool in screening the right CD for the solubilization of the right drug.     

Fluorescence and Label Free Impedimetric DNA Detection on SnO2 Nanopillars

SnO₂ is a n‐type semiconductive oxide with attractive characteristics mainly based on easy elaboration and functionalization routes in addition to chemical robustness. We have fabricated SnO₂ nanopillars based DNA sensor to perform the label free (without any redox compound) impedimetric DNA detection. The non faradaic electrochemical impedance spectroscopic (EIS) behavior and more particularly the evolution of the polarization resistance the SnO₂ nanopillars has been thoroughly investigated upon the different steps of their functionalization process up to DNA hybridization. Similarly to our previous study on planar 2D SnO₂ surfaces, the DNA hybridization induces a systematic increase of the polarization resistance, the magnitude of which decreases with the target DNA concentration. This DNA concentration dependence matches the one obtained from epifluorescence intensity measurements. A common value of DNA detection limit, i.e. 2 nM, is found from both measurement techniques. Interestingly the 3D view intensity obtained by confocal scanning laser fluorescence microscopy confirms that the DNA molecules are mainly grafted along the SnO₂ nanopillars. Finally both impedance and fluorescence measurements obtained in the case of 1‐ and 2‐base mismatch hybridizations demonstrate the selectivity of the SnO₂ nanopillars based DNA sensor. These preliminary results open the way to further investigations on the influence of both the shape ratio and electrical properties of the SnO₂ nanopillars on the impedance variations related to DNA hybridization, notably in view of improving the sensor performances.     

CtrA gene based electrochemical DNA sensor for detection of meningitis

Electrochemical DNA sensor has been fabricated by immobilizing thiolated single stranded oligonucleotide (ssDNA) probe onto gold (Au) coated glass electrode for meningitis detection using hybridization with complementary DNA (CtrA) in presence of methylene blue (MB). These electrodes (ssDNA/Au and dsDNA/Au) have been characterized using atomic force microscopy (AFM), Fourier transform infrared spectroscopy (FT-IR), electrochemical impedance spectroscopy (EIS) and cyclic voltammetric (CV) technique. The DNA/Au electrode can detect the complementary DNA in the range of 7–42 ng/μl in 5 min (hybridization) with response time 60 s and electrode is stable for about 4 months when stored at 4 °C. The sensitivity of dsDNA/Au electrode is 115.8 μA/ng with 0.917 regression coefficient (R).