Study of DNA Light Switch Ru(II) Complexes : Synthesis,Characterization, Photocleavage and Antimicrobial Activity

The three Ru(II) complexes of [Ru(phen)₂dppca]²⁺ (1) [Ru(bpy)₂dppca]²⁺ (2) and [Ru(dmb)₂dppca]²⁺ (3) (where phen = 1,10 phenanthroline, bpy = 2,2-bipyridine, dmb = 2 ,2-dimethyl 2′,2′-bipyridine and polypyridyl ligand containing a single carboxylate functionality dppca ligand (dipyridophenazine-11-carboxylic acid) have been synthesized and characterized. These complexes have been shown to act as promising calf thymus DNA intercalators and a new class of DNA light switches, as evidenced by UV-visible and luminescence titrations with Co²⁺ and EDTA, steady-state emission quenching by [Fe(CN)₆]⁴⁻ and KI, DNA competitive binding with ethidium bromide, viscosity measurements, and DNA melting experiments. The results suggest that 1, 2, and 3 complexes bind to CT-DNA through intercalation and follows the order 1 > 2 > 3. Under irradiation at 365 nm, the three complexes have also been found to promote the photocleavage of plasmid pBR322 DNA.     

Electrochemically induced multicomponent assembling of isatins, 4-hydroxyquinolin-2(1H)-one and malononitrile: a convenient and efficient way to functionalized spirocyclic [indole-3,4′-pyrano[3,2-c]quinoline] scaffold

Electrochemically induced catalytic multicomponent transformation of isatins, 4-hydroxyquinolin-2(1H)-one and malononitrile in ethanol in an undivided cell in the presence of sodium bromide as an electrolyte results in the formation of spirooxindoles with fused functionalized indole-3,4′-pyrano[3,2-c]quinoline] scaffold in 75–91% substance yields and 500-600% current yield. The developed efficient electrocatalytic approach to medicinally relevant [indole-3,4′-pyrano[3,2-c]quinoline] scaffold is beneficial from the viewpoint of diversity-oriented large-scale processes and represents a novel example of facile environmentally benign synthetic concept for electrocatalytic multicomponent reactions.     

Photophysics of bis-bipyridyl complexes of ruthenium(II) with triphenylphosphine

We studied the spectral-luminescent characteristics of the luminescence of mixed-ligand polypyridine-phosphine complexes of ruthenium(II) cis-[Ru(bpy)₂(PPh₃)X](BF₄) _n with ligands 2,2′-bipyridyl (bpy) and triphenylphosphine (PPh₃) and X = Cl⁻, Br⁻, CN⁻, NO₂⁻, NH₃, MeCN, pyridine (py), 4-aminopyridine (pyNH₂), and 4,4′-bipyridyl (4,4′-bpy) in a 4: 1 EtOH-MeOH alcoholic mixture at 77 K. The radiative and nonradiative deactivation rate constants of the lowest electronically excited state of the complexes are determined. We find that triphenylphosphine has a greater effect on the photophysical characteristics of ruthenium(II) complexes compared to π-acceptor strong-field ligands, such as MeCN, CN⁻, and NO₂⁻. At the same time, the characteristics of complexes cis-[Ru(bpy)₂(PPh₃)X] ⁿ⁺ considerably depend on the nature of the second monodentate ligand X, which is coordinated to ruthenium(II), and correlate with its position in the spectrochemical series of ligands.     

Dynamics of tRNAtyr Probed with Long-Lifetime Metal-Ligand Complexes

The metal-ligand complexes, [Ru(bpy)₂(dppz)]²⁺ (bpy = 2,2??-bipyridine, dppz = dipyrido[3,2-a:2??,3??-c]phenazine) (RuBD) and [Ru(phen)₂(dppz)]²⁺ (phen = 1,10-phenanthroline) (RuPD), display favorable photophysical properties including long lifetime, polarized emission, and very little background fluorescence. To check if RuBD and RuPD reflect the overall rotational mobility of small nucleic acid, we measured the intensity and anisotropy decays of RuBD and RuPD when intercalated into tRNA^tyr using pBC SK(+) phagemid as a control. We used frequency-domain fluorometry with a blue light-emitting diode (LED) as the modulated light source. We observed shorter lifetimes for tRNA^tyr than those for the pBC SK(+) phagemid for both probes, however, RuPD showed much larger decrease in the mean lifetime values (64%). The slow rotational correlation time of RuBD (31.3 ns) and the fast rotational correlation time of RuPD (26.0 ns) reflected the overall rotational mobility of tRNA^tyr. In addition, the steady-state anisotropy and time-resolved anisotropy decay data showed a clear difference between tRNA^tyr and pBC SK(+) phagemid. This suggests the possibility of a homogeneous assay for identifying target nucleic acids and/or nucleic acid binding proteins.     

A mild and efficient method for the synthesis of a new class of furo[3,2-c]chromenes in aqueous media

An efficient synthesis of 2-hydroxy-3-[2-oxo-2-phenylethylidene]-2-phenyl-2, 3-dihydro-4 H-furo[3, 2-c]chromene-4(2H)-one is described. This involves the reaction between dibenzoylacetylene and 4-hydroxycoumarine in the presence of NaH (10 mol %) in nearly quantitative yield. Treatment of this heterocyclic system with trimethyl chlorosilane in CHCl₃ leads quantitatively to 4-oxo-3-[2-oxo-2-phenylethylidene]-2-phenyl-3H, 4H-furo[3,2-c]chromene-1-ium chloride. Direct addition of nucleophiles, such as alcohols, amines or trialkyl phosphites to this salt in water as the solvent produces functionalized 2-phenyl-4H-furo[3,2-c] chromen derivatives in excellent yields.     

Synthesis, characterization, DNA binding and cleavage studies of mixed-ligand Cu(II) complexes of 2,6-bis(benzimidazol-2-yl)pyridine

Four novel copper(II) complexes of the composition [CuLX] where L = 2,6-bis(benzimidazole-2yl)pyridine, X = dipyridophenazine (L₁), 1,10-phenanthroline (L₂), hydroxyproline (L₃) and 2,6-pyridine dicarboxylic acid (L₄) were synthesized and characterized by using elemental analysis, FT-IR, UV–vis, ESI-MS, molar conductance and magnetic susceptibility measurements. The complexes [CuLL₁](NO₃)₂ [1], [CuLL₂](NO₃)₂ [2], [CuLL₃](NO₃) [3] and [CuLL₄] (NO₃) [4] are stable at room temperature. In DMSO the complexes [1] and [2] are 1:2 electrolytes, [3] and [4] are 1:1 electrolytes. Based on elemental and spectral studies five coordinated geometry is assigned to all the four complexes. The interaction of four copper ion complexes with calf thymus DNA were carried out by UV–vis titrations, fluorescence spectroscopy, thermal melting and viscosity measurements .The binding constant (K_b) of the above four metal complexes were determined as 5.43 × 10⁴ M_,⁻¹ 2.56 × 10⁴ M⁻¹, 1.21 × 10⁴ M⁻¹ and 1.57 × 10⁴ M⁻¹ respectively. Quenching studies of the four complexes indicates that these complexes strongly bind to DNA, out of all complex 1 is binding more strongly. Viscosity measurements indicate the binding mode of complexes with CT DNA by intercalation through groove. Thermal melting studies also support intercalative binding. The nuclease activity of the above metal complexes shows that 1, 2 and 3 complexes cleave DNA through redox chemistry.     

Effect of water vapors on the luminescence of cation-exchange membranes modified by Pt(II) and Ru(II) complexes and Nile blue

The surface of a cation-exchange membrane was modified by the [PtEnPpy]⁺, [PtEnBt]⁺, [PtEnTpy]⁺, [RuBpy₃]⁺², and NB⁺, (En is ethylenediamine; Ppy, Bt, Tpy are α-deprotonated forms of 2-phenylpyridine, 2-phenylbenzothiazole, and 2-(2′-thienyl)pyridine, respectively; Bpy is 2,2′-bipyridyl, and NB⁺ is Nile blue) ions, which exhibit intense luminescence. It is found that the quenching of the luminescence of the modified cation-exchange membrane by water vapors depends on the nature of the excited electronic state of the immobilized cation.     

Synthesis, Characterization, DNA-Binding Properties of the Ln(III) Complexes with 6-Hydroxy Chromone-3-Carbaldehyde-(4′-Hydroxy) Benzoyl Hydrazone

6-Hydroxy chromone-3-carbaldehyde-(4′-hydroxy) benzoyl hydrazone (L) and its Ln (III) complexes, [Ln = La, Nd, Eu and Tb] have been prepared and characterized on the basis of elemental analyses, molar conductivities, mass spectra, ¹H NMR, thermogravimety/differential thermal analysis (TG-DTA), UV-vis spectra, fluorescence spectra and IR spectra. The formula of the complex is [Ln L·(NO₃)₂]·NO₃. Spectrometric titration, ethidium bromide displacement experiments and viscosity measurements indicate that Eu (III) complex bind with calf-thymus DNA, presumably via an intercalation mechanism. The intrinsic binding constant of Eu (III) with DNA was 2.48 × 10⁵ M⁻¹ through fluorescence titration data.     

Dielectronic recombination rate coefficients for the Ni ${\sf I}$ isoelectronic sequence

Ab initio calculations of the total dielectronic recombination (DR) rate coefficients for thirteen ions along the NiI isoelectronic sequence in the ground state (Kr⁸⁺, Mo¹⁴⁺, Ag¹⁹⁺, Sn²²⁺, Xe²⁶⁺, Nd³²⁺, Gd³⁶⁺, Yb⁴²⁺, W⁴⁶⁺, Au⁵¹⁺, Pb⁵⁴⁺, At⁵⁷⁺, and U⁶⁴⁺) have been performed using the flexible atomic code. The level-by-level calculations are performed for evaluating the DR contributions through the relevant Cu-like autoionizing inner-shell excited 3l¹⁷4l^′n^′′l^′′ and 3l¹⁷5l^′n^′′l^′′ configuration complexes with n^′′ ≤15, which are associated with Δn=1 and Δn=2 core-excitations, respectively. The usual (n^′′)^-3 scaling law is found to be invalid for low-Z ions. A level-by-level extrapolation procedure is employed to obtain the contributions through higher n^′′ complexes. The decays to autoionizing levels followed possibly by radiative cascades could enlarge the rates at relatively high temperature by a factor up to about 23%. For the whole isoelectronic ions the contributions from 3s²3p⁶3d⁹ 4l^′n^′′l^′′ dominate the total DR rates while the contributions from the 3s²3p⁶3d⁹ 5l^′n^′′l^′′ configuration complexes are about 10-20% at relatively high temperature. On the basis of the calculated results, a general analytic formula for the total DR rate coefficients of all the ions with 36≤Z ≤92 along the NiI isoelectronic sequence is constructed. The comparisons of the rates obtained from the general formula with those from the detailed calculations show that the formula is of high precision, generally better than 3% accuracy for electron temperatures kT≥0.1E_I, where E_I is the ionization energy of the Cu-like ion. The present DR rates at temperature above 1.0E_I are larger than the previously published data by a factor above 30%. The commonly used semiempirical formula proposed by Burgess and modified by Merts may overestimate the rates at high temperature by a factor of about 2 for low-Z ions.     

Optical,electrochemical, and <Superscript>1</Superscript>H NMR characteristics of Mono-, Bi-, and tetranuclear cyclopalladated complexes with 4,4′-bipyridyl

The [Pd(C∧N)(4,4′-bpy)Cl], [Pd(C∧N)NO₃]₂(μ-4,4′-bpy) and [Pd(C∧N)(μ-4,4′-bpy)]₄(NO₃)₄ complexes (C∧N⁻ are deprotonated forms of 2-phenylpyridine (ppy), 2-(2′’-thienyl)pyridine (tpy), and 2-phenylbenzothiazole (bt); bpy is 4,4′ bipyridyl) are synthesized and characterized by ¹H NMR spectroscopy, electronic absorption and emission spectroscopy, and cyclic voltammetry. The upfield shifts of the chemical shift of a proton in the ortho-position to the donor carbon atom of the cyclopalladated ligand of complexes (Δδ = −(1.1–1.5) ppm) is assigned to the anisotropic effect of the circular current of the pyridine rings of 4,4′-bipyridyl orthogonal to the coordination plane. The characteristic long-wavelength absorption and phosphorescence bands of the complexes are assigned to the chromophore metal-complex fragment {M(C∧N)}. The quasi-reversible reduction waves of complexes are assigned to the ligand-centered processes of successive electron transfer to the π*-orbitals localized mainly on the coordinated pyridine components of 4,4′-bipyridyl.     

New Luminescent Bioprobes Eu(lll)-phloroglucinol Derivatives and Their Spectrofluorimetric, Electrochemical Interactions with Nucleotides and DNA

Two new ligands derived from phloroglucinol 2-{[(4-methoxy benzoyl ) oxy ] } methyl benzoic acid[L1] and 2-{[(4-methyl benzoyl )oxy] methyl} benzoic acid[L2] were synthesized. The solid complex Eu(III)-L2 has been synthesised and characterized by elemental analysis ,UV and IR spectra. The reaction of Eu(III) with the two synthesized ligands has been investigated in I = 0.1 mol dm^-3 p-toluene sulfonate by cyclic voltammetry and square wave voltammetry. The reaction of Eu (III)–L1 and Eu (III)–L2 binary complexes with nucleotide 5′-AMP , 5′-ADP ,5′-ATP , 5′- GMP , 5′-IMP , and 5′-CMP has been investigated using UV, fluorescence and electrochemical methods. The experimental conditions were selected such that self-association of the nucleotides and their complexes was negligibly small, that is, the monomeric complexes were studied. The interaction of the Eu(III)–L1 or L 2 solid complexes with calf-thymus DNA has been investigated by fluorescence and electrochemical methods including cyclic voltammetery(CV) ,differential pulse polarography (DPP) and square wave voltammetry (SWV) on a glassy carbon electrode. The fluorescence intensity of Eu(III)-L2 complex was enhanced with the addition of DNA. Under optimal conditions in phosphate buffer pH 7.0 at 25 °C the linear range is 3–20 μM for calf thymus DNA (CT–DNA) and the corresponding determination limit is 1.8 μM.     

Nuclear Spin-Lattice Relaxation of 82BrFe

The field dependence of the nuclear spin-lattice relaxation (SLR) of cold implanted ⁸²Br (T ≤ 25 mK) in α-Fe single crystals was investigated with nuclear magnetic resonance of oriented nuclei (NMR/ON) at low temperatures as experimental technique. The SLR at the lattice sites with the hyperfine fields found by earlier NMR/ON experiments was measured as a function of the applied external magnetic field B _ext parallel to the three principle axes [100], [110] and [111] of the iron single crystal. The data were evaluated with the full relaxation formalism in the single impurity limit and for comparison also with the often employed model of a single exponential function with an effective relaxation time T ₁′. With a phenomenological model the high field values of the relaxation rates r _{∞, [100]′} = 6.6(2) · 10⁻¹⁵ T²sK⁻¹, r _{∞, [110]} = 5.4(2) · 10⁻¹⁵ T²sK⁻¹ and r _{∞, [111]} = 5.2(1) · 10⁻¹⁵ T²sK⁻¹ were obtained.     

A turn-on fluorescent chemosensor for Hg based on phenanthroline fluorophore

Dipyrido[3,2-a:2′,3′-c]-phenazine (L) was employed as a selectively fluorescent chemosensor for Hg²⁺ in DMF solution under buffered conditions with its fluorescence being strongly increased. The fluorescence increasing was attributed to the formation of L–Hg²⁺ by 1:1 complex ratio (K=3.7×10⁵ M⁻¹), which constitutes the basis for the determination of Hg²⁺ with the prepared chemosensor. The experiment results also show that the response behavior of L to Hg²⁺ is pH independent in the range of pH 6.0–9.0 and show excellent sensitivity and selectivity for Hg²⁺ over other examined metal ions.     

New one-pot synthesis of spiro[furo[2,3-<Emphasis Type="Italic">d</Emphasis>]pyrimidine-6,5′-pyrimidine]pentaones and their sulfur analogues

Reaction of barbituric acid (BA), 1,3-dimethyl barbituric acid (DMBA) and 2-thiobarbituric acid (TBA) with cyanogen bromide and various aldehydes in presence of triethylamine afforded a new class of heterocyclic stable 5-alkyl and/or 5-aryl-1H, 1′H-spiro[furo[2,3-d]pyrimidine-6,5′-pyrimidine]2,2′,4,4′,6′(3H,3′H,5H)-pentaones which are dimeric forms of barbiturate (uracil and thiouracil derivatives) at 0 °C to ambient temperatures. Structure elucidation is proved by X-ray crystallography, ¹H NMR, ¹³C NMR, FT-IR, CHN and mass analyses techniques. Mechanisms of the formations are discussed.     

Synthesis, Characterization, Antioxidant Activity and DNA-Binding Studies of Three Rare Earth (III) Complexes with 1-(4-Aminoantipyrine)-3-tosylurea Ligand

1-(4-Aminoantipyrine)-3-tosylurea (H₂L) and its three lanthanide (III) complexes, M(H₂L)₃ 3NO₃ [where M = Nd(III), Sm(III) and Eu(III)], have been synthesized and characterized. In addition, the DNA-binding properties of the three complexes have been investigated by UV–vis (ultraviolet and visible) absorption spectroscopy, fluorescence spectroscopy, circular dichroism (CD) spectroscopy, cyclic voltammetry, and viscosity measurements. Results suggest that the three complexes bind to DNA via a groove binding mode. Furthermore, the antioxidant activity (superoxide and hydroxyl radical) of the metal complexes was determined by using spectrophotometer methods in vitro. These complexes were found to possess potent antioxidant activity and be better than standard antioxidants like vitamin C and mannitol. Absorption spectra of the complex 3 inTris-HCl buffer upon addition of calf-thymus DNA. [complex]=1×10^-5 M, [DNA]=(0-1) ×10^-5 M. Arrow shows the absorbance changing upon increasing DNA concentrations. Inset: plots of [DNA]/(ε_a – ε_f) versus [DNA] for the titration of DNA with the complex.     

3391 and 7699 laser generations and questions on the chaos

Summary In this report investigations are presented of laser generations at 3391 nm and 3391 and 7699 nm, or rather of changes induced by them in populations of the 5s′ [1/2] ₁ ⁰ , 4p′[3/2]₂ and 3d′[5/2] ₃ ⁰ levels, depending upon the angle of the tilted mirror of the He−Ne laser system. This writer has discovered that the above laser generations develop at a strongly tilted mirror, when the beam reflected from one mirror, in order to reach the other, has to be reflected many times on the inside walls of the discharge tube. The work was supported by CPBR 8.14.     

Magnetic properties of ordered nanowires of the quasi-two-dimensional antiferromagnet SpFeMn(C<Subscript>2</Subscript>O<Subscript>4</Subscript>)<Subscript>3</Subscript>

Ordered arrays of nanowires of the photochromic antiferromagnet SpFeMn(C₂O₄)₃ (where Sp is 1-{(1′,3′,3′-trimethyl-6-nitro-5′-chlorospiro[2H-1-benzopyran-2,2′-indolin]-8-yl)methyl}pyridinium) have been fabricated in anodized aluminum oxide pores with diameters of 20 and 200 nm. It has been revealed that the growth of the spin-glass phase with noncollinear ordering of spins in nanowires is suppressed in favor of the uniaxial antiferromagnetic phase. A decrease in the nanowire diameter leads to an increase in the anisotropy of the magnetic resonance spectra. This is associated with the magnetocrystalline anisotropy that considerably exceeds the anisotropy of the nanowire shape.     

Synthesis,spectroscopic, thermal and electrical conductivity studies of three charge transfer complexes formed between 1,3-di[(<Emphasis Type="Italic">E</Emphasis>)-1-(2-hydroxyphenyl)methylideneamino]-2-propanol Schiff base and different acceptors

Charge-transfer complexes (CTC) resulting from interactions of 1,3-di[(E)-1-(2-hydroxyphenyl) methylideneamino]-2-propanol Schiff base with some acceptors such as iodine (I₂), bromine (Br2), and picric acid (PiA) have been isolated in the solid state in a chloroform solvent at room temperature. Based on elemental analysis, UV-Vis, infrared, and ¹H NMR spectra, and thermogravimetric analysis (TG/DTG) of the solid CTC, [(Schiff)(I₂)] (1), [(Schiff)(Br₂)] complexes with a ratio of 1:1 and [(Schiff)(PiA)₃] complexes with 1:3 have been prepared. In the picric acid complex, infrared and ¹H NMR spectroscopic data indicate that the charge-transfer interaction is associated with a hydrogen bonding, whereas the iodine and bromine complexes were interpreted in terms of the formation of dative ion pairs [Schiff⁺, I₂^∙−] and [Schiff⁺, Br₂^∙−], respectively. Kinetic parameters were obtained for each stage of thermal degradation of the CT complexes using Coats–Redfern and Horowitz–Metzger methods. DC electrical properties as a function of temperature of these charge transfer complexes have been studied.     

Interaction with DNA of the novel cationic complex (2, 2′: 6′, 2″-terpyridine)methyl platinum(II)

Summary The planarity and electron delocalization of the 2, 2′:6′, 2″-terpyridine (terpy) moiety in salts of the type [Pt(terpy)Me]X leads to extensive stacking interactions in aqueous solution. UV/VIS,¹H NMR and resonance light scattering spectra provide evidence for the tendency of the complex to form large aggregates even under low ionic strength conditions. The interaction of the cationic complex with calf thymus DNA was investigated by spectroscopic techniques and mobility assays. At highr _f ratios the complex seems to form extended aggregates on the surface of the nucleic acid but at lowerr _f evidence was obtained for intercalation. Paper presented at the I International Conference on Scaling Concepts and Complex Fluids, Copanello, Italy, July 4–8, 1994.     

Quadrupolar interaction in iridium cyanide mixed-ligands complexes in alkali halide matrices by ESR spectroscopy

Quadrupolar interactions in [IR(CN)₅]³⁻, [Ir(CN)₅Cl]⁴⁻ and [Ir(CN)₄Cl₂]⁴⁻ paramagnece a complexes in alkali halide host lattices are systematically analysed by ESR spectroscopy. The measured quadrupolar interactions are shown to have no clear correlation to the measured unpaired electron populations.