Thiophene chemistry—X Preparation, tautomeric structure and hydrogen bonding studies of thioisomaltol (2-acetyl-3-hydroxythiophene) and some related 3-hydroxythiophenes

Different acetyl- and carbethoxysubstituted 3-t-butoxythiophenes have been prepared via organometallic reagents. Dealkylation of these t-butyl ethers in the presence of a catalytic amount of p-toluenesulphonic acid at 150° gives the corresponding 3-hydroxythiophenes in almost quantitative yields. Spectroscopic investigations by NMR and IR show that carbonyl (acetyl or carbalkoxy)-substituted 3-hydroxythiophenes exist exclusively in the hydroxyaromatic form in polar and non-polar media and in the pure (solid or liquid) state. The only exception is 5-carbethoxy-2,3-dihydroxythiophene which is shown to exist in one of is two possible unsaturated γ-thiolactone forms. the NMR and IR-spectra show the presence of hydrogen bonding and when intramolecular hydrogen bonding is sterically possible its strength, as measured by the chemical shft of the enolic proton (NMR) and shifts to lower wave numbers for both the hydroxyl and carbonyl frequencies (IR), is discussed along with observations for compounds with similar structures. Long-range spin coupling between the aromatic C-5 proton and the OH proton is observed in one case.     

Structural investigation on phenyl‐ and pyridin‐2‐ylamino(methylene)naphthalen‐2(3H)‐one. Substituent effects on the NMR chemical shifts

Schiff bases bearing phenyl and pyridyl groups were synthesized by condensation of appropriate amines with 2‐hydroxynaphthaldehyde. These Schiff bases were obtained as colored crystalline solids. The proton NMR spectra of these compounds showed a doublet for the NH protons indicating a keto tautomer for these Schiff bases. The pyridyl‐substituted Schiff bases containing hydroxyl moiety were found to show the most downfield shift for the NH protons in DMSO solvent, and this was rationalized due to the formation of a six‐ and five‐membered ring using hydrogen bonds for these two compounds. Correspondingly, the olefinic proton of the Schiff bases is also found to be a doublet due to coupling to the amine proton. These Schiff bases exhibited thermochromic properties. Detailed NMR spectral analysis for both the phenyl‐ and pyridyl‐substituted Schiff bases is presented. Copyright © 2010 John Wiley & Sons, Ltd.     

13C NMR study of some polychloro-isobutane and -isobutene compounds

The ¹³C chemical shifts and the carbon–proton coupling constants have been determined for some chlorinated isobutane and isobutene compounds. The one-bond coupling constants in isobutane derivatives showed a regular increase with an increasing number of γ-chlorine substituents. The three-bond coupling constant of the methyl carbon decreased from 4.2 to 2.0 Hz as the number of chlorine substituents in the γ-position increased. In the isobutene compounds, the vicinal coupling of C-1 was larger to protons in a group that is trans with respect to a chlorine substituent on C-1 than to those in the corresponding group cis to the chlorine. The vicinal coupling constants between atoms in geminal groups (on C-2) seem to be affected by the orientation of the chlorine substituent on C-1.     

1H NMR investigations on the conformation of the spirodioxolanes derived from vicinal diols. II—The ketal of cyclohexanone and racemic 1,2-propanediol

The methylene, methine and methyl protons at C-2 and C-3 from the dioxolane moiety in 2-methyl-1,4-dioxaspiro[4.5]decane constitute an ABMX₃ coupling system. The analysis data obtained and, also, the application of the Karplus rule to the value of the J(AB) vicinal coupling constant, confirm the axial orientation of the A methine proton and the pseudoequatorial orientation of the B methylene proton. These findings agree with a ‘half-chair’ conformation of the 1,3-dioxolane ring.     

Ultrafast N-H vibrational dynamics of cyclic doubly hydrogen-bonded homo- and heterodimers

Hydrogen-bonded interfaces are essential structural elements in biology. Furthermore, they can mediate electron transport by coupling the electron to proton transfer within the interface. The specific hydrogen-bonding configuration and strength have a large impact on the proton transfer, which exchanges the hydrogen-bonded donor and acceptor species (i.e., NH...O --> N...HO). Modulations of the hydrogen-bonding environment, such as the hydrogen-bond stretch and twist modes, affect the proton-transfer dynamics. Here, we present transient grating and echo peak shift measurements of the NH stretch vibrations of four doubly hydrogen-bonded cyclic dimers in their electronic ground state. The equilibrium vibrational dynamics exhibit strong coherent modulations that we attribute to coupling of the high-frequency NH vibration to the low-frequency interdimer stretch and twist modes and not to interference between multiple Fermi resonances that dominate the substructure of the linear spectra.     

Prediction of ortho(β) 13C chemical shifts in conjugated systems

An equation has been developed which relates ortho or C-β ¹³C substituent chemical shifts (SCS) to the ortho proton–proton coupling constant in the unsubstituted member of a conjugated series. This method is an extension of previous equations which have been used to predict ortho ¹H SCS values, and has its origin in a relationship between bond order and SCS values. The equation was derived from ortho ¹³C data in 2-naphthalenes and monosubstituted benzenes and its application to other unsaturated series is discussed.     

Cyclization into hydrindanones using samarium diiodide

Samarium(II) iodide has been employed to promote vinylogous pinacol coupling reaction of aldehyde onto alpha,beta-unsaturated ketones. The diastereoselectivity of 6-endo products was changed by addition of a proton source and/or HMPA and by the reaction temperature. The cyclization reactions described herein provide a general approach to the syntheses of 3,3-dimethylhydrindanes with a cis-relationship between the OH at C-4 and the proton at C-3a with good diastereoselectivity and under mild reaction conditions.     

Mechanism of the condensation reaction between 1-aryl- and heteroaryl-1,4-dihydro-3(2H)-isoquinolinones and aldehydes

4-Benzylidene-1-phenyl-1,4-dihydro-3(2H)-isoquinolinone, the intermediary product of the carbonyl condensation reaction between 1-phenyl-1,4-dihydro-3(2H)-isoquinolinone and benzaldehyde, rearranges in the presence of an equivalent quantity of sodium hydride into 4-benzyl-1-phenyl-3(2H)-isoquinolinone. As the possibility of the migration of the hydrogen at C-1 in the form of a proton or a hydrogen atom (radical reaction) was excluded, the mechanism of the rearrangement could be depicted as an intermolecular hydride anion migration. In case of the 1-(4-pyridyl)- and 1-(3-pyridyl)-1,4-dihydro-3(2H)-isoquinolinones, however, the rearrangement can be carried out also in polyphosphoric acid and in this case a proton loss-proton gain mechanism was proved.     

Synthesis and NMR spectral study of some t(3)-aryl-r(2),c(4)-bisethoxycarbonyl-t(5)-hydroxy-c(5)-methylcyclohexanones

Six t(3)-aryl-r(2),c(4)-bisethoxycarbonyl-t(5)-hydroxy-c(5)-methylcyclohexanones (6-11) were synthesized by condensing ArCHO (Ar = Ph, p-O(2)NC(6)H(4), p-CH(3)OC(6)H(4), p-ClC(6)H(4), m-O(2)NC(6)H(4) and m-C(6)H(5)O(6)H(4)) with ethyl acetoacetate in the presence of methylamine and their (1)H and (13)C NMR spectra were recorded. (1)H-(1)H COSY and NOESY spectra were recorded for 6 and 7 and also HSQC and HMBC spectra for 6 and 8. Elemental analysis was carried out for all compounds. The mass spectrum was recorded for 8. All analytical data are consistent with the proposed molecular formulae. Analysis of NMR spectral data suggests that these compounds largely adopt chair conformations with the hydroxyl group occupying an axial orientation and all the other substituents occupying equatorial orientations. Long-range coupling (2-3 Hz) between the OH proton and the axial methylene proton at C-6 is observed in 6, 7, 8 and 11.     

Application of nuclear magnetic relaxation to elucidate proton location and dynamics in n···h···o hydrogen bonds

The proton location and dynamics in a hydrogen bond in solution are fundamentally important for understanding the phenomenon of proton transfer (PT). In the present study, the proton location and its dynamics were explored for the NH form of the two PT tautomers of the Schiff base by analyzing the fluctuation of the (15)N-(1)H magnetic dipolar coupling by the PT as well as the NH reorientational motion. For this purpose, the (15)N and (13)C spin-lattice relaxation times were measured in dichloromethane or acetonitrile solutions of three Schiff bases with different substituents on the benzene moieties, N-(4,6-dimethoxysalicylidene)methylamine (compound 1), N-(1-methylnitrilomethylidyne)-2-naphthalenomethylamine (compound 2), and N-(3,5-dibromosalicylidene)-methylamine (compound 3). For the NH form of compound 2 in dichloromethane, the proton location shifted to the center between the nitrogen and oxygen atoms, as compared with the minimum of the PT potential surface derived from molecular orbital calculations. For the NH form of compound 3 in dichloromethane, the proton location shift was not observed, and the PT rate was significantly lower than the reorientation rate of the NH bond. The results are discussed in terms of the electronic effect of the substituents and the static and dynamic solvent effect.     

A simple method to determine the anomeric configuration of sialic acid and its derivatives by 13C-NMR

The anomeric configuration of sialic acid and its derivatives could be determined on the basis of the coupling pattern of C-1 in the gated proton-decoupled or selective proton decoupled ¹³C-NMR spectra; the α anomer gave a doublet C-1 signal while the β gave a singlet.The α-anomers gave a doublet C-1 signal while the β gave a singlet in their selective proton-decoupled spectra.     

Localization and moving of a proton inside hydrogen-bonded complexes in aprotic solvents

The results of the study of a number of molecular and ionic H-bonded complexes in freon solutions by ¹H NMR at 100–150 K are reported. It is shown that under these conditions the signals of OH(NH) protons belonging to various complexes, self-associates and free molecules are observed separately. The spin-spin coupling of the signals is frequently discernible. The fine structure makes it possible to distinguish between complexes with fast proton migration between two wells on the potential surface and those with the proton localized in one well (in particular, the central one). Several complexes with slow (in the NMR scale) proton migration have also been found.The results of the study of the non-catalytic proton exchange kinetics between various molecules containing OH and NH groups in dilute solutions in aprotic solvents are considered. The exchange between the RCOOH and ROH molecules goes on via the intermediate formation of a cyclic ionic pair with two equivalent H-bonds even in non-polar solvents such as cyclohexane. For exchange between two RCOOH or ROH molecules a synchronous transfer of two protons in a cyclic molecular complex is likely.     

Photoinduced Electron Transfer in Pentaammineruthenium(II) Complexes of 1-(4-Cyanophenyl)imidazole

A new bridging ligand, 1-(4-cyanophenyl)imidazole (CPI) has been prepared, as well as its N-methylated derivative 1-methyl-3-(4-cyanophenyl)imidazolium iodide (CPI-Me(+)I(-)). The mononuclear and binuclear complexes [(NH(3))(5)Ru-CPI-Me](3+) and [(NH(3))(5)Ru-CPI-Ru(NH(3))(5)](4+) have been obtained. Free CPI is planar, according to theoretical calculations (MMX and MNDO), and its luminescence properties suggest the occurence of a twisted internal charge transfer (TICT) state. The comparison of the two ruthenium complexes reveals the spectral and electrochemical features of coordination by the cyanophenyl or by the imidazole groups. Controlled oxidation of the binuclear complex [(NH(3))(5)Ru-CPI-Ru(NH(3))(5)](4+) yields the mixed valence species [(NH(3))(5)Ru-CPI-Ru(NH(3))(5)](5+) in which the ruthenium coordinated to the cyanophenyl group is ruthenium(II) while the ruthenium linked to imidazole is ruthenium(III). An intervalence band is observed at 640 nm (epsilon = 188), from which the effective metal-metal coupling through the bridging ligand is determined as 0.032 eV. This value is satisfactorily reproduced by a theoretical calculation using the effective Hamiltonian theory. Finally the binuclear complex exhibits a weak luminescence when excited either on the ligand band near 260 nm or on the metal-to-ligand charge transfer band near 410 nm. The CPI ligand is the first example of a TICT-forming species with appreciable coupling between metallic sites and can be considered as a first step toward a molecular switch.     

Vicinal interproton couplings through two heteroatoms. II—Coupling 3J(H?N?O?H) occurring in m-Nitrophenylhydroxylamines

The proton NMR spectra of certain arylhydroxylamines in DMSO-d₆ show a vicinal coupling through nitrogen and oxygen. The assignment of OH and NH signals was made using a ¹⁵N labelled derivative.     

Multinuclear magnetic resonance and molecular modeling investigations as unambiguous methods for the determination of silacycle 3D structures

An unexpected six-membered silacycle was obtained using ring-closing metathesis of diallylsilane 3. The ring size of the compound formed was derived using a 2D 13C-13C inadequate experiment. All proton and carbon-13 resonances were assigned from classical 2D NMR experiments and the proton coupling pattern was clarified. Molecular modeling calculation was then applied using NMR data as constraints, giving the 3D structure of the synthesized compound.     

Grotthus-type and diffusive proton transfer in 7-hydroxyquinoline.(NH(3))(n) clusters.

Proton translocation along ammonia wires is investigated in 7-hydroxyquinoline.(NH(3))(n) clusters, both experimentally by laser spectroscopy and theoretically by Hartree-Fock and density functional (DFT) calculations. These clusters serve as realistic finite-size models for proton transfer along a chain of hydrogen-bonded solvent molecules. In the enol tautomer of 7-hydroxyquinoline (7-HQ), the OH group acts as a proton injection site into the (NH(3))(n)cluster. Proton translocation along a chain of three NH(3) molecules within the cluster can take place, followed by reprotonation of 7-HQ at the quinolinic N atom, forming the 7-ketoquinoline tautomer. Exoergic proton transfer from the OH group of 7-HQ to the closest NH(3) molecule within the cluster giving a zwitterion 7-HQ-.(NH(3))(6)H+ (denoted PT-A) occurs at a threshold cluster size of n = 6 in the DFT calculations and at n = 5 or 6 experimentally. Three further locally stable zwitterion clusters denoted PT-B, PT-B', and PT-C, the keto tautomer, and several transition structures along the proton translocation path were characterized theoretically. Grotthus-type proton-hopping mechanisms occur for three of the proton transfer steps, which have low barriers and are exoergic or weakly endoergic. The step with the highest barrier involves a complex proton transfer mechanism, involving structural reorganization and large-scale diffusive motions of the cluster.     

Elimination of 118 Da: a characteristic fragmentation in the tandem mass spectra of 11(15 --> 1)-abeo-taxanes

The mechanism of the elimination of 118 Da from 11(15-->1)-abeo-taxanes was elucidated with the help of the tandem mass spectra of [M + NH(4)](+) and [M + Li](+) ions and the corresponding D-exchanged species. The fragmentation is triggered by the initial loss of the C-10 substituent. Evidence was also obtained for the stepwise elimination of acetone and acetic acid. Acetone is eliminated from the C-1 hydroxyisopropyl group and acetic acid from either the C-9 or C-7 acetoxy groups. The presence of an additional acetoxy group at C-13 leads to the direct elimination of 118 Da from [M + NH(4)](+) and [M + Li](+) ions involving the C-13 acetoxy group.     

Carbon-13 as a tool for the study of carbohydrate structures, conformations and interactions

The application of 13C-NMR spectroscopy to problems involving the structures and interactions of carbohydrates is described. Both 13C-enriched and natural abundance compounds were used and some advantages of the use of the stable isotope are described. Carbon-carbon and carbon-proton coupling constants obtained from 1-13C enriched carbohydrates were employed in the assignment of their chemical shifts and to establish solution conformation. In all cases studied thus far, C-3 couples to C-1 only in the beta-anomers while C-5 couples to C-1 only in the alpha-anomers. C-6 and C-2 always couple to C-1 in both anomeric species. The alkaline degradation of glucose [1-13C] to saccharinic acids was followed by 13C-NMR. The conversion of glucose [1-13C] to fructose-1, 6-bisphosphate [1, 6-13C] by enzymes of the glycolytic pathway was shown as an example of the use of 13C-enriched carbohydrates to elucidate biochemical pathways. In a large number of glycosyl phosphates the 31P to H-1 and 31P to C-2 coupling constants demonstrate that in the preferred conformation and phosphate group lies between the O-5 and the H-1 of the pyranose ring. The influence of paramagnetic Mn2 + ions on the proton decoupled 13C-NMR spectra of uridine diphosphate N-acetylglucosamine indicates that the Mn2 + interacts strongly with the pyrophosphate moiety and with the carbonyl groups of the uracil and N-acetyl groups.     

Reversible (de)protonation-induced valence inversion in mixed-valent diiron(II,III) complexes

The coupling of electron and proton transfers is currently under intense scrutiny. This Communication reports a new kind of proton-coupled electron transfer within a homodinuclear first-row transition-metal complex. The triply-bridged complex [Fe(III)(μ-OPh)(μ(2)-mpdp)Fe(II)(NH(2)Bn)] (1; mpdp(2-) = m-phenylenedipropionate) bearing a terminal aminobenzyl ligand can be reversibly deprotonated to the anilinate complex 2 whose core [Fe(II)(μ-OPh)(μ(2)-mpdp)Fe(III)(NHBn)] features an inversion of the iron valences. This observation is supported by a combination of UV-visible, (1)H NMR, and M?ssbauer spectroscopic studies.     

Intramolecular nitro-assisted proton transfer in photoirradiated 2-(2',4'-dinitrobenzyl)pyridine: polarized optical spectroscopic study and electronic structure calculations

The nitro-assisted proton transfer (NAPT), responsible for the photoactivity of ortho-nitrobenzylpyridines and a model for the nitro-based caged compounds, is studied along with the parent compound 2-(2',4'-dinitrobenzyl)pyridine (DNBP) with polarized optical spectroscopy and theoretical calculations. The transition dipole moments of a DNBP single-crystal identified oriented molecules of the long-lived enamine tautomer (NH), rather than of the aci-nitro tautomer (OH), as carriers of the photoinduced blue coloration. It is clarified that the blue second singlet transition owes to intramolecular charge transfer from the allyl-pyridinium part to the dinitrophenyl fragment of NH. The theoretical modeling of the ground-state potential energy surface showed that while NH and OH can interconvert by means of direct proton transfer, such a process between the initial form CH and either OH and NH would require significant rotation of the aromatic rings. In the ground state, OH is less stable but the kinetically preferred product over NH. Once created, regardless of whether via ground-state or excited-state routes, the aci-nitro group of OH undergoes energetically inexpensive rotation to deliver the proton to the nitrogen acceptor. The "softening" of the energy surface around OH due to its structural flexibility, that is, mediation of the proton transfer by the nitro group, is crucial to overcome the high barrier for a direct proton jump from CH to NH, even in cases of unfavorable donor-acceptor geometry. The very small structural change experienced by the surrounding of a molecule undergoing NAPT is promising for the design of photoactive systems which retain their crystallinity during a prolonged operation.