Noncovalent synthesis of supramolecular dendritic architectures in water

Water‐soluble guest–host complexes are prepared in a two‐step process. For this a new, polydisperse ethylene glycol containing guest molecule is synthesized that is soluble in both chloroform and water. This guest is able to bind to urea–adamantyl‐modified poly(propylene imine) dendrimers in chloroform in a noncovalent manner. When the chloroform is slowly evaporated and D₂O is added, the hydrophobic dendrimer is solubilized in water. This is not possible when the hydrophobic dendrimer is directly added to the hydrophilic guests in water. When the unmodified poly(ethylene glycol) starting material is used, no solubilization occurs, and this indicates that the urea–acetic acid head group is necessary to solubilize the dendrimer. Approximately 26 guests are required for solubilization of the dendrimer. A lower number of guests results in aggregation and precipitation of the dendrimer. A monodisperse guest molecule has been used in NMR studies to show that the guest molecule binds with its acidic head group to the periphery of the dendrimer. This methodology opens the way to functional dendrimer aggregates in aqueous media. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 6431–6437, 2005     

Remote control of the reversible assembly/disassembly of supramolecular aggregates

ABSTRACT

A multi-component system is presented in which the actuation of a copper-loaded nanoswitch by zinc(II) ions as an external trigger and the thereby prompted release of copper(I) ions allows self-assembly of 11 parts resulting in the formation of a three-component supramolecular prism. Using the same protocol, a three-component rectangle was made from eight parts. Disassembly of the aggregates was accomplished by selective removal of zinc(II) ions using hexacyclen. In sum, the reversible assembly and disassembly of supramolecular aggregates was controlled in a multi-component mixture through intermolecular communication using a second messenger.     

stk: A python toolkit for supramolecular assembly

A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the construction of linear polymers, small linear oligomers, organic cages in multiple topologies and covalent organic frameworks (COFs) in multiple framework topologies, but is designed to be easy to extend to new, unrelated, supramolecules or new topologies. Extension to metal–organic frameworks (MOFs), metallocycles or supramolecules, such as catenanes, would be straightforward. Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk . © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc.     

pH-dependent assembly of Keggin-based supramolecular architecture

Three Keggin-based supramolecular architectures were synthesized on the basis of same molecular building units, showing that the pH value of the reaction plays a crucial role in controlling the topological structures of the supramolecular architectures.     

Synthesis and structural features of sulfur-substituted calix[4]pyrrole for a bottom-up control of the substrate-directed self-assembly of supramolecular structures

The synthesis of six new calix[4]pyrroles, containing sulfur-substituted phenylene units is reported. Halogen-anions and organic aromatic mono- and bis-anions have been selected to explore the formation of host-guest complexes and the possible self-assembly of multi-component structures with the six calixpyrroles. The type of aryl substitution modulates the strength of binding and the selectivity towards different anions and, in some cases, the combination of receptors and bis-anionic precursors, offers a way to build systems in which capsular assemblies are observed.     

Bottom-up supramolecular assembly in two dimensions

The self-assembly of molecules in two dimensions (2D) is gathering attention from all disciplines across the chemical sciences. Attracted by the interesting properties of two-dimensional inorganic analogues, monomers of different chemical natures are being explored for the assembly of dynamic 2D systems. Although many important discoveries have been already achieved, great challenges are still to be addressed in this field. Hierarchical multicomponent assembly, directional non-covalent growth and internal structural control are a just a few of the examples that will be discussed in this perspective about the exciting present and the bright future of two-dimensional supramolecular assemblies.

The self-assembly of molecules in two dimensions (2D) is gathering attention from all disciplines across the chemical sciences. This perspective discusses the main strategies to direct the supramolecular self-assembly of organic monomers in 2D.     

Coordinative supramolecular assembly of electrochromic thin films

The article is concerned with the layer-by-layer (LbL) assembly of electrochromic films using coordinative interactions between compounds. At first the concepts of coordinative supramolecular assembly are explained and examples are presented. Subsequently electrochromic LbL assemblies prepared upon electrostatic and/or coordinative interactions are briefly discussed. In the focus of the article are films of terpyridine(tpy)-functionalized polyiminoarylene metal ion complexes, which are prepared upon coordinative LbL assembly of the tpy-substituted polyiminoarylenes and metal ions. The films exhibit reversible electrochromic behavior with high contrast and fast response times. It is demonstrated that the electrochromic behavior of the films can be modified by a variation of polymer structure, metal ions, and counterions.     

Synthesis of a biodegradable polymeric supramolecular assembly for drug delivery

A novel design of a biodegradable carrier for drug delivery was established by constructing a supramolecular assembly of drugs and polymer backbones without any covalent bonds. A biodegradable polyrotaxane was synthesized in which α-cyclodextrins (α-CDs) as drug carriers were threaded onto poly(ethylene glycol) chains which then were capped at each chain end by L -phenylalanine via peptide linkages. The release of α-CDs was observed only when the terminal peptide linkages were degraded.     

A non-covalent strategy for the assembly of supramolecular photocurrent-generating systems

Three photocurrent-generating thin films were assembled on gold surfaces. SAM I was constructed from molecules consisting of an alkyl disulfide group linked covalently to a 12-residue helical peptide and terminated with an alanine residue containing a pyrene chromophore. SAM I served as a benchmark for multilayered films II and III in photocurrent generation experiments. Films II and III were assembled from several components that were linked noncovalently by metal-ligand complexation. Cyclic voltammetry and contact angle measurements suggest that the films consist of ordered layers with relatively few defects. Photoexcitation of SAM I by the output of a 350 nm lamp ( approximately 0.2 mW power incident on the sample) results in current generation in the range 5-10 nA/cm2. Photoexcitation of II and III yields higher current in the range 10-30 nA/cm2, representing a quantum efficiency of approximately 1%. The observation of comparable or higher current from noncovalently assembled multicomponent films indicates that this method of assembly may obviate the problems associated with the covalent assembly of devices from large molecules.     

Liposome-templated supramolecular assembly of responsive alginate nanogels

Nanosized gel particles (nanogels) are of interest for a variety of applications, including drug delivery and single-molecule encapsulation. Here, we employ the cores of nanoscale liposomes as reaction vessels to template the assembly of calcium alginate nanogels. For our experiments, a liposome formulation with a high bilayer melting temperature (Tm) is selected, and sodium alginate is encapsulated in the liposomal core. The liposomes are then placed in an aqueous buffer containing calcium chloride, and the temperature is raised up to Tm. This allows permeation of Ca2+ ions through the bilayer and into the core, whereupon these ions gel the encapsulated alginate. Subsequently, the lipid bilayer covering the gelled core is removed by the addition of a detergent. The resulting alginate nanogels have a size distribution consistent with that of the template liposomes (ca. 120-200 nm), as confirmed by transmission electron microscopy and light scattering. Nanogels of different average sizes can be synthesized by varying the template dimensions, and the gel size can be further tuned after synthesis by the addition of monovalent salt to the solution.     

Coadsorption-induced reconstruction of supramolecular assembly characteristics.

A host supramolecular structure consisting of bis-(2,2':6',2"-terpyridine)-4'-oxyhexadecane (BT-O-C16) is shown to respond to coadsorbed molecules in dramatic ways, as observed by scanning tunneling microscopy (STM) on a highly oriented pyrolytic graphite (HOPG) surface under ambient conditions. Interestingly, the lattice parameter of the triphenylene-filled complex differs significantly from that of the coronene-filled one, although the triphenylene and coronene molecules are nearly the same size. The STM study and density functional theory calculations reveal that intermolecular hydrogen-bond interactions play an essential role in forming the assembly structures. The different electronic properties of coronene and triphenylene molecules are responsible for the difference in lattice parameters and consequently for the difference in filling behaviors in the coronene/BT-O-C16 and triphenylene/BT-O-C16 binary systems.     

Biological bottom-up assembly of antibody nanotubes on patterned antigen arrays

Application of biotechnology in nanofabrication has an advantage to produce functional building-block materials that may not have synthetic counterparts. Here we introduced a new type of building block, antibody nanotubes, and demonstrated anchoring them on complementary antigen arrays via antibody-antigen recognition. Biological recognition between the antibody nanotubes and the antigen arrays permitted recognition-driven assembly of ordered nanotube arrays. The array of antigens was written by using the tip of an atomic force microscope (AFM) on alkylthiol self-assembled monolayer (SAM)-coated Au substrates via nanografting. After antigens were immobilized onto the shaved regions of the alkylthiol SAMs with the AFM tip, antibody nanotubes, produced by incubating antibodies in template nanotube solutions, were selectively attached onto the antigen regions. This technique is very useful when multiple building blocks are necessary to address specific locations on substrates because simultaneous immobilization of multiple antibody nanotubes at specific complementary binding positions can be achieved in a single process.     

Hierarchical mesoporous silica wires by confined assembly

The assembly of silicate and surfactant confined within cylindrical alumina pore channels results in circular hexagonal, concentric lamellar and other unique mesostructures.     

Formation of supramolecular isomers; poly[2]rotaxane and supramolecular assembly

Poly[2]rotaxane and supramolecular assembly have been prepared by modified cyclodextrins bearing an adamantyl group in an aqueous medium.     

Stimuli-responsive supramolecular nanocapsules from amphiphilic calixarene assembly

We synthesized tetrameric amphiphilic molecules based on a calixarene building block that self-assembles into a tunable and stable aggregation structure in aqueous solution. The amphiphilic calixarene molecules with a small hydrophilic part were observed to assemble into a vesicular structure that decreases significantly in diameter with only small increases in the hydrophilic chain length. Further increasing the chain length induced the collapse of the vesicles into spherical micelles. Remarkably, the vesicles were also observed to transform into small globular micelles at lower pH, which can be used to trigger the release of the encapsulated hydrophilic guest molecules.     

Noncovalent control of absorption and fluorescence spectra

Perylene dyes with N-tert-alkyl substituents were prepared in which noncovalent interactions of the crowded substituent cause a variation of the geometry of the core and induce hypsochromic shifts in absorption and fluorescence. The interpretation of the shifts was supported by means of DFT calculations and an X-ray crystal structure analysis.     

Directed supramolecular surface assembly of SNAP-tag fusion proteins

Supramolecular assembly of proteins on surfaces and vesicles was investigated by site-selective incorporation of a supramolecular guest element on proteins. Fluorescent proteins were site-selectively labeled with bisadamantane by SNAP-tag technology. The assembly of the bisadamantane functionalized SNAP-fusion proteins on cyclodextrin-coated surfaces yielded stable monolayers. The binding of the fusion proteins is specific and occurs with an affinity in the order of 10(6) M(-1) as determined by surface plasmon resonance. Reversible micropatterns of the fusion proteins on micropatterned cyclodextrin surfaces were visualized by using fluorescence microscopy. Furthermore, the guest-functionalized proteins could be assembled out of solution specifically onto the surface of cyclodextrin vesicles. The SNAP-tag labeling of proteins thus allows for assembly of modified proteins through a host-guest interaction on different surfaces. This provides a new strategy in fabricating protein patterns on surfaces and takes advantage of the high labeling efficiency of the SNAP-tag with designed supramolecular elements.     

Two-photon absorption of a supramolecular pseudoisocyanine J-aggregate assembly

Linear spectral properties, including excitation anisotropy, of pseudoisocyanine or 1,1′-diethyl-2,2′-cyanine iodide (PIC) J-aggregates in aqueous solutions with J-band position at 573 nm were investigated. Two-photon absorption of PIC J-aggregates and monomer molecules was studied using an open aperture Z-scan technique. A strong enhancement of the two-photon absorption cross-section of PIC in the supramolecular J-aggregate assembly was observed in aqueous solution. This enhancement is attributed to a strong coupling of the molecular transition dipoles. No two-photon absorption at the peak of the J-band was detected.