Cocrystals of 6‐propyl‐2‐thiouracil: N—H...O versus N—H...S hydrogen bonds

In order to investigate the relative stability of N—H...O and N—H...S hydrogen bonds, we cocrystallized the antithyroid drug 6‐propyl‐2‐thiouracil with two complementary heterocycles. In the cocrystal pyrimidin‐2‐amine–6‐propyl‐2‐thiouracil (1/2), C₄H₅N₃·2C₇H₁₀N₂OS, (I), the `base pair' is connected by one N—H...S and one N—H...N hydrogen bond. Homodimers of 6‐propyl‐2‐thiouracil linked by two N—H...S hydrogen bonds are observed in the cocrystal N‐(6‐acetamidopyridin‐2‐yl)acetamide–6‐propyl‐2‐thiouracil (1/2), C₉H₁₁N₃O₂·2C₇H₁₀N₂OS, (II). The crystal structure of 6‐propyl‐2‐thiouracil itself, C₇H₁₀N₂OS, (III), is stabilized by pairwise N—H...O and N—H...S hydrogen bonds. In all three structures, N—H...S hydrogen bonds occur only within R₂²(8) patterns, whereas N—H...O hydrogen bonds tend to connect the homo‐ and heterodimers into extended networks. In agreement with related structures, the hydrogen‐bonding capability of C=O and C=S groups seems to be comparable.     

Bis[1‐(2‐hydroxyethyl)‐4,10‐diazapyrazolo[4,3‐b]fluoren‐5(1H)‐one thiosemicarbazonato]zinc(II) dimethylformamide trisolvate monohydrate

In the title Schiff base complex, [Zn(C₁₅H₁₂N₇OS)₂]·3C₃H₇NO·H₂O, each Zn^II atom is six‐coordinated in a distorted octahedral environment by two ligands acting in a tridentate chelating mode through two N atoms and one S atom. The coordination mode of the ligand is nearly planar. There are three dimethylformamide molecules and one water molecule solvating the complex. The coordination behavior of the ligand is compared with that of related ligands in similar complexes.     

Hydrogen Sulfide Donors Activated by Reactive Oxygen Species

Hydrogen sulfide (H₂S) exhibits promising protective effects in many (patho)physiological processes, as evidenced by recent reports using synthetic H₂S donors in different biological models. Herein, we report the design and evaluation of compounds denoted PeroxyTCM, which are the first class of reactive oxygen species (ROS)‐triggered H₂S donors. These donors are engineered to release carbonyl sulfide (COS) upon activation, which is quickly hydrolyzed to H₂S by the ubiquitous enzyme carbonic anhydrase (CA). The donors are stable in aqueous solution and do not release H₂S until triggered by ROS, such as hydrogen peroxide (H₂O₂), superoxide (O₂^?), and peroxynitrite (ONOO^?). We demonstrate ROS‐triggered H₂S donation in live cells and also demonstrate that PeroxyTCM‐1 provides protection against H₂O₂‐induced oxidative damage, suggesting potential future applications of PeroxyTCM and similar scaffolds in H₂S‐related therapies.     

Short intramolecular S⃛O ­interactions in S-substituted 2-­mercaptoaceto­phenones

The non-bonded S⃛O intramolecular interactions in the title compounds 2-(phenyl­thio)­aceto­phenone {IUPAC: 2-[2-(phenylsulfanyl)phenyl]ethanone}, C₁₄H₁₂OS, and 2-(benzyl­thio)­aceto­phenone {IUPAC: 2-[2-(benzylsulfanyl)phenyl]­ethanone}, C₁₅H₁₄OS, are unusually short, indicating the contribution of heterocyclic oxa­thiole-type resonance structures to the overall bonding.     

In Vivo Detection of Hydrogen Sulfide in Brain and Cell

Hydrogen sulfide (H₂S), is proposed as a cytoprotectant and gasotransmitter, involving in many physiological processes and regulating of some diseases. In addition, H₂S is a small molecular with a minimum of steric hindrance compared with other reactive sulfur species. In physiological atmosphere, H₂S is mainly existent in HS⁻, which has a strong nucleophilicity and reducing potency. It also can precipitate with some metal ions forming metallic sulfides with high precipitation coefficient. In recent years, the researchers have a desire to develop methods to achieve real-time detection of H₂S in vivo, further understanding the physiology and pathology of H₂S. In this minireview, we summarize recent progress for detecting of H₂S in brain or cell and briefly expound the principle of methods with the comparison of the different methods between performance and temporal resolution.     

Bis(dimethyl sulfoxide‐S)tetrakis(μ‐p‐hydroxybenzoato‐O:O′)dirhodium(II)–tetrakis(μ‐butyrato‐O:O′)bis(dimethyl sulfoxide‐S)dirhodium(II) cocrystal ethanol disolvate

The title structure, [Rh₂(C₇H₅O₃)₄(C₂H₆OS)₂]·[Rh₂(C₄H₇­O₂)₄(C₂H₆OS)₂]·2C₂H₆O, contains two discrete neutral Rh–Rh dimers cocrystallized as the ethanol disolvate. Each dimer is situated on an inversion center. The butyrate chain displays disorder in one C‐atom position. In each dimer, the di­methyl sulfoxide ligand (dmso) is bound via S, as expected. The ethanol is a hydrogen‐bond acceptor for one p‐hydroxy­benzoate hydroxyl group and acts as a hydrogen‐bond donor to the dmso O atom of a neighboring p‐hydroxy­benzoate dirhodium complex. A third hydrogen bond is formed from the other p‐hydroxy­benzoate hydroxyl group to the dmso O atom of a butyrate–dirhodium complex.     

O→S Relay Deprotection: A General Approach to Controllable Donors of Reactive Sulfur Species

Reactive sulfur species (RSS) are biologically important molecules. Among them, H₂S, hydrogen polysulfides (H₂S_n, n>1), persulfides (RSSH), and HSNO are believed to play regulatory roles in sulfur‐related redox biology. However, these molecules are unstable and difficult to handle. Having access to their reliable and controllable precursors (or donors) is the prerequisite for the study of these sulfur species. Reported in this work is the preparation and evaluation of a series of O‐silyl‐mercaptan‐based sulfur‐containing molecules which undergo pH‐ or F^?‐mediated desilylation to release the corresponding H₂S, H₂S_n, RSSH, and HSNO in a controlled fashion. This O→S relay deprotection serves as a general strategy for the design of pH‐ or F^?‐triggered RSS donors. Moreover, we have demonstrated that the O‐silyl groups in the donors could be changed into other protecting groups like esters. This work should allow the development of RSS donors with other activation mechanisms (such as esterase‐activated donors).     

Colorimetric Carbonyl Sulfide (COS)/Hydrogen Sulfide (H2S) Donation from γ‐Ketothiocarbamate Donor Motifs

Hydrogen sulfide (H₂S) is a biologically active molecule that exhibits protective effects in a variety of physiological and pathological processes. Although several H₂S‐related biological effects have been discovered by using H₂S donors, knowing how much H₂S has been released from donors under different conditions remains challenging. Now, a series of γ‐ketothiocarbamate (γ‐KetoTCM) compounds that provide the first examples of colorimetric H₂S donors and enable direct quantification of H₂S release, were reported. These compounds are activated through a pH‐dependent deprotonation/β‐elimination sequence to release carbonyl sulfide (COS), which is quickly converted into H₂S by carbonic anhydrase. The p‐nitroaniline released upon donor activation provides an optical readout that correlates directly to COS/H₂S release, thus enabling colorimetric measurement of H₂S donation.     

Retinal Photodamage Mediated by All‐trans‐retinal†

Accumulation of all‐trans‐retinal (all‐trans‐RAL), reactive vitamin A aldehyde, is one of the key factors in initiating retinal photodamage. This photodamage is characterized by progressive retinal cell death evoked by light exposure in both an acute and chronic fashion. Photoactivated rhodopsin releases all‐trans‐RAL, which is subsequently transported by ATP‐binding cassette transporter 4 and reduced to all‐trans‐retinol by all‐trans‐retinol dehydrogenases located in photoreceptor cells. Any interruptions in the clearing of all‐trans‐RAL in the photoreceptors can cause an accumulation of this reactive aldehyde and its toxic condensation products. This accumulation may result in the manifestation of retinal dystrophy including human retinal degenerative diseases such as Stargardt’s disease and age‐related macular degeneration. Herein, we discuss the mechanisms of all‐trans‐RAL clearance in photoreceptor cells by sequential enzymatic reactions, the visual (retinoid) cycle, and potential molecular pathways of retinal photodamage. We also review recent imaging technologies to monitor retinal health status as well as novel therapeutic strategies preventing all‐trans‐RAL‐associated retinal photodamage.     

trans‐Bis(thioacetato‐S)bis(triphenylphosphine‐P)nickel(II)

In the title compound, [Ni(C₂H₃OS)₂(C₁₈H₁₅P)₂], the Ni atom lies on an inversion centre and the tri­phenyl phosphine and thio­acetate ligands are bonded to the central Ni^II atom in a trans fashion, with Ni—S = 2.2020 (8) and Ni—P = 2.2528 (8) Å, and angle S—Ni—P = 92.47 (3)°.     

Detection of Protein S‐Sulfhydration by a Tag‐Switch Technique

Protein S‐sulfhydration (forming ‐S‐SH adducts from cysteine residues) is a newly defined oxidative posttranslational modification and plays an important role in H₂S‐mediated signaling pathways. In this study we report the first selective, “tag‐switch” method which can directly label protein S‐sulfhydrated residues by forming stable thioether conjugates. Furthermore we demonstrate that H₂S alone cannot lead to S‐sulfhydration and that the two possible physiological mechanisms include reaction with protein sulfenic acids (P‐SOH) or the involvement of metal centers which would facilitate the oxidation of H₂S to HS^..     

A novel 8‐carboxyindeno[1,2‐b]quinoxalin‐11‐one thio­semi­carbazone zinc(II) Schiff base complex

In the novel title binuclear zinc(II) Schiff base complex, bis­(μ‐11‐thio­semicarbazonoindeno[1,2‐b]quinoxaline‐8‐carboxylato)bis­[(dimethyl sulfoxide)zinc(II)] dimethyl sulfoxide tri­solvate, [Zn₂(C₁₇H₉N₅O₂S)₂(C₂H₆OS)₂]·3C₂H₆OS, each Zn^II atom is five‐coordinated and situated in a distorted square‐pyramidal environment, coordinated by two L²⁻ ligands and one dimethyl sulfoxide mol­ecule. Each L²⁻ ligand, which coordinates to two Zn^II atoms, has two parts. One part, acting in a tridentate chelating mode, coordinates to one Zn^II atom through two N atoms and one S atom, while another part coordinates to another Zn^II atom through a monodentate carboxylate group. The whole complex has a dimeric structure. The coordination mode of the nearly planar L²⁻ ligand is quite different from the most common mode for Schiff bases.     

Alleviating Cellular Oxidative Stress through Treatment with Superoxide-Triggered Persulfide Prodrugs

Overproduction of superoxide anion (O₂^.−), the primary cellular reactive oxygen species (ROS), is implicated in various human diseases. To reduce cellular oxidative stress caused by overproduction of superoxide, we developed a compound that reacts with O₂^.− to release a persulfide (RSSH), a type of reactive sulfur species related to the gasotransmitter hydrogen sulfide (H₂S). Termed SOPD-NAC , this persulfide donor reacts specifically with O₂^.−, decomposing to generate N-acetyl cysteine (NAC) persulfide. To enhance persulfide delivery to cells, we conjugated the SOPD motif to a short, self-assembling peptide (Bz-CFFE-NH₂) to make a superoxide-responsive, persulfide-donating peptide ( SOPD-Pep ). Both SOPD-NAC and SOPD-Pep delivered persulfides/H₂S to H9C2 cardiomyocytes and lowered ROS levels as confirmed by quantitative in vitro fluorescence imaging studies. Additional in vitro studies on RAW 264.7 macrophages showed that SOPD-Pep mitigated toxicity induced by phorbol 12-myristate 13-acetate (PMA) more effectively than SOPD-NAC and several control compounds, including common H₂S donors.     

Nanostructures-based sensing strategies for hydrogen sulfide

Hydrogen sulfide (H₂S) is a very toxic, flammable, and harmful gas. It may be formed naturally or be released into the environment due to human activities. Exposure of humans to a high level of H₂S leads to many hazardous effects. On the other hand, H₂S is produced in vivo and it has many physiological actions as the third physiological gas transmitter. Therefore, it is crucial to develop sensitive, selective, and easily operated sensors to monitor H₂S in its two-sided nature as toxic gas and as a physiological gas transmitter. Recently, the revolution in nanotechnology has a great impact on the development of many sensing techniques that adopt nanosensors for the detection of H₂S. Herein, we abridged the nanostructure-based electrochemical and optical sensors for H₂S in different matrices with a special emphasis on their advantages and applications. A discussion of the sensing mechanisms and the analytical features are also addressed. Finally, the future perspectives and recommended trends for H₂S detection are discussed.     

H2S splitting on Cu(110): Insight from combined periodic density functional theory calculations and microkinetic simulation

Practical copper (Cu)‐based catalysts for the water–gas shift (WGS) reaction was long believed to expose a large proportion of Cu(110) planes. In this work, as an important first step toward addressing sulfur poisoning of these catalysts, the detailed mechanism for the splitting of hydrogen sulfide (H₂S) on the open Cu(110) facet has been investigated in the framework of periodic, self‐consistent density functional theory (DFT‐GGA). The microkinetic model based on the first‐principles calculations has also been developed to quantitatively evaluate the two considered decomposition routes for yielding surface atomic sulfur (S*): (1) H₂S → H₂S* → SH* → S* and (2) 2H₂S → 2H₂S* → 2SH* → S* + H₂S* → S* + H₂S. The first pathway proceeding through unimolecular SH* dissociation was identified to be feasible, whereas the second pathway involving bimolecular SH* disproportionation made no contribution to S* formation. The molecular adsorption of H₂S is the slowest elementary step of its full decomposition, being related with the large entropy term of the gas‐phase reactant under realistic reaction conditions. A comparison of thermodynamic and kinetic reactivity between the substrate and the close‐packed Cu(111) surface further shows that a loosely packed facet can promote the S* formation from H₂S on Cu, thus revealing that the reaction process is structure sensitive. The present DFT and microkinetic modeling results provide a reasonably complete picture for the chemistry of H₂S on the Cu(110) surface, which is a necessary basis for the design of new sulfur‐tolerant WGS catalysts. © 2013 Wiley Periodicals, Inc.     

cis-Bis(di­methyl sulfoxide-S)­dinitrato­palladium(II) and cis-dinitratobis(1,4-oxathiane-S)­palladium(II)

The Pd atom in each of the two title compounds, [Pd(NO₃)₂(C₂H₆OS)₂], (I), and [Pd(NO₃)₂(C₄H₈OS)₂], (II), coordinates two O atoms from two nitrate ligands and two S atoms from di­methyl sulfoxide (dmso) and thio­xane (systematic name: 1,4-oxathiane) ligands in a pseudo-square-planar cis-geometry. In the dmso complex, the distances to palladium are Pd—O 2.067 (2) and 2.072 (2) Å, and Pd—S 2.2307 (11) and 2.2530 (8) Å. The corresponding distances in the thio­xane complex are Pd—O 2.053 (3) and 2.076 (2) Å, and Pd—S 2.2595 (9) and 2.2627 (11) Å. Both compounds may be regarded as dimers with an inversion centre, where one of the coordinating nitrate O atoms in one mol­ecule also interacts with the Pd atom in the adjacent mol­ecule, with Pd—O distances of 2.849 (9) and 3.31 (3) Å in (I) and (II), respectively.     

The first square‐planar copper(II) 1:2 complex with differently coordinated 2‐hydroxybenzaldehyde 4‐allylthiosemicarbazone ligands

The title compound, [(Z)‐4‐allyl‐2‐(2‐hydroxybenzylidene)thiosemicarbazide‐κS][(E)‐4‐allyl‐1‐(2‐oxidobenzylidene)thiosemicarbazidato‐κ³O,N¹,S]copper(II) monohydrate, [Cu(C₁₁H₁₁N₃OS)(C₁₁H₁₃N₃OS)]·H₂O, crystallized as a rotational twin in the monoclinic crystal system (space group Cc) with two formula unit (Z′ = 2) in the asymmetric unit, one of which contains an allyl substituent disordered over two positions. The Cu^II atom exhibits a distorted square‐planar geometry involving two differently coordinated thiosemicarbazone ligands. One ligand is bonded to the Cu^II atom in a tridentate manner via the phenolate O, azomethine N and thioamide S atoms, while the other coordinates in a monodentate manner via the S atom only. The complex is stabilized by an intramolecular hydrogen bond, which creates a six‐membered pseudo‐chelate metalla‐ring. The structure analysis indicates the presence of the E isomer for the tridentate ligand and the Z isomer for the monodentate ligand. The crystal structure contains a three‐dimensional network built from intermolecular O—H...O, N—H...O, O—H...N and N—H...S hydrogen bonds.     

Zur Wechselwirkung einiger Übergangsmetallhalogenide mit o-Mercaptophenol

The interaction of some transition metal halides with o-mercaptophenol o-Mercaptophenol reacts with WCl₆, TiCl₄, ZrCl₄, NbCl₅ and TaCl₅ giving the corresponding tris-chelat-komplexe W(C₆H₄OS)₃, H₂[M(C₆H₄OS)₃] (M = Ti, Zr), H[M(C₆H₄OS)₃] (M = Nb, Ta). (C₅H₅)₂TiCl₂ and (C₅H₅)₂ZrBr₂give in presence of triethylamine the compounds (C₅H₅)₂M(C₆H₄OS) (M = Ti, Zr). By reaction of nickel(II) acetyl-acetonate with o-mercaptophenol the polymeric octahedral complex nickel-bis-(o-hydroxy-thiophenolate) results.     

5‐Methyl‐2‐thiouracil

The molecular structure of the title compound, also known as 2‐thio­thymine [systematic name: 2,3‐di­hydro‐5‐methyl‐2‐thioxopyrimidin‐4(1H)‐one], C₅H₆N₂OS, is similar to that of thymine, with only small changes in the ring structure, apart from a significant difference at the substitution site [S=C = 1.674 (1) Å]. The mol­ecules are connected by hydrogen bonds, with N—H?O = 2.755 (2) Å and N—H?S = 3.352 (1) Å. The hydrogen‐bond network is different from that in thymine, since it involves all the donor and acceptor atoms.     

Computational modeling of green hydrogen generation from photocatalytic H2S splitting: Overview and perspectives

Hydrogen plays an important role in developing a clean and sustainable future energy scenario. Substantial efforts to produce green hydrogen from water splitting, biomass and hydrogen sulfide (H₂S) have been made in recent years. H₂S, naturally occurring or generated in fuel gas processing and industrial wastewater treatment, can be split into hydrogen and sulfur via photocatalysis. Although it is not as widely used as water splitting for green hydrogen production, this process is considered to be an appropriate and sustainable way to meet the future energy demands, adding value to H₂S. Therefore, it is essential to understand how to improve the solar light utilization and splitting efficiency of H₂S based on the existing technology and materials. Along with that effort, molecular modeling and theoretical calculations are indispensable tools to provide guidance to effectively design photocatalysts for improving hydrogen generation efficiency. In this review, we summarize the published work on H₂S photocatalysis modeling and illustrate the use of different computational methods to gain more in-depth insight into the reaction mechanisms and processes. Moreover, an overview of quantum mechanical and molecular simulation approaches combined with other modeling techniques, relevant to material science and catalysis design and applicable to H₂S splitting is also presented. Challenges and future directions for developing H₂S splitting photocatalysts are highlighted in this contribution, which is intended to inspire further simulation developments and experiments for H₂S splitting, tailoring photocatalysts design towards highly efficient hydrogen production.