A functionalized noncovalent macrocyclic multiporphyrin assembly from a dizinc(II) bis-porphyrin receptor and a free-base dipyridylporphyrin

The bis-porphyrin system ZnP(2), in which two zinc porphyrins are connected by a phenanthroline linker in an oblique fashion, acts as a bifunctional receptor towards the complexation of free-base meso-5,10-bis(4'-pyridyl)-15,20-diphenylporphyrin (4'-cis DPyP). In solution, NMR spectroscopy evidenced quantitative formation of the tris-porphyrin macrocyclic assembly ZnP(2)(4'-cis DPyP), in which the two fragments are held together by two axial 4'-N(pyridyl)-Zn interactions. The remarkable stability of the edifice (an association constant of about 6x10(8) M(-1) was determined by UV/Vis absorption and emission titration experiments in toluene) is due to the almost perfect geometrical match between the two interacting units. The macrocycle was crystallized and studied by X-ray diffraction, which confirmed the excellent complementarity of the two components. Photoinduced energy transfer from the singlet excited state of the zinc porphyrin chromophores to the free-base porphyrin occurs with an efficiency of 98 % (k(en)=2x10(10) s(-1) in toluene, ambient temperature) with a mechanism consistent with a dipole-dipole process with a low orientation factor.     

Assembly of Palladium(II) and Platinum(II) Metallo‐Rectangles with a Guanosine‐Substituted Terpyridine and Study of Their Interactions with Quadruplex DNA

Two novel [2+2] metallo‐assemblies based on a guanosine‐substituted terpyridine ligand ( 1 ) coordinated to palladium(II) ( 2 a ) and platinum(II) ( 2 b ) are reported. These supramolecular assemblies have been fully characterized by NMR spectroscopy, ESI mass spectrometry and elemental analyses. The palladium(II) complex ( 2 a ) has also been characterized by single crystal X‐ray diffraction studies confirming that the system is a [2+2] metallo‐rectangle in the solid state. The stabilities of these [2+2] assemblies in solution have been confirmed by DOSY studies as well as by variable temperature ¹H NMR spectroscopy. The ability of these dinuclear complexes to interact with quadruplex and duplex DNA was investigated by fluorescent intercalator displacement (FID) assays, fluorescence resonance energy transfer (FRET) melting studies, and electrospray mass spectrometry (ESI‐MS). These studies have shown that both these assemblies interact selectively with quadruplex DNA (human telomeric DNA and the G‐rich promoter region of c‐myc oncogene) over duplex DNA, and are able to induce dimerization of parallel G‐quadruplex structures.     

Molecular recognition: preorganization of a bis(pyrrole) Schiff base derivative for tight dimerization by hydrogen bonding

Multiple techniques have been used to delineate the self-assembly of a bis(pyrrole) Schiff base derivative (compound 4, C(16)H(14)N(4)), which forms an unusual dimer through complementary N-H...N=C hydrogen bonds between twisted, C2-symmetric monomer units. The asymmetric unit of the crystal structure comprises one and a half dimer units, with one dimer exhibiting approximate D2 point-group symmetry and the other exact D2 symmetry (space group C2/c). The dimers pack into columns whose axes are collinear with the a axis of the unit cell. The columns assemble into discrete layers with two distinct types of hydrogen-sized voids residing between the layers. Despite the promising architecture of the voids within the lattice of 4, the absence of genuine channels to interconnect the voids precludes the uptake of hydrogen gas, even at elevated pressures (10 bar). AM1 calculations of the structure of dimeric 4 indicate that self-recognition through hydrogen bonding depends primarily on favorable electrostatic interactions. The potential-energy surface for monomeric 4 mapped by counter-rotation of an adjacent pair of C=C-N=C torsion angles indicates that the X-ray structures of the four monomeric units are global minima with highly nonplanar conformations that are preorganized for self-recognition by hydrogen bonding. The in vacuo enthalpy of association for the dimer was calculated to be significantly exergonic (DeltaG(assoc)=-21.9 kJ mol(-1), 298 K) and in excellent agreement with that determined by 1H NMR spectroscopy in CDCl3 (DeltaG(assoc)=-16.6(4) kJ mol(-1), 298 K). Using population and bond order analyses, in conjunction with the conformation dependence of the frontier MO energies, we have been able to show that pi-electron delocalization is only marginally diminished in the nonplanar conformers of 4 and that the electronic structures of the constituent monomers of the dimer are well mixed.     

Dendron-functionalized bis(terpyridine)-iron(II) or -cadmium(II) metallomacrocycles: synthesis, traveling-wave ion-mobility mass spectrometry, and photophysical properties

The synthesis, purification, structural analysis, and photophysical properties of a series of five-, six-, and seven-sided Fe(II) macrocycles and the corresponding hexameric Cd(II) macrocycle, all prepared by self-assembly of a 120° bis(terpyridine) ligand modified with first- and second-generation 1→3 C-branched dendrons, are reported. All metallomacrocycles were fully characterized by (1)H and (13)C NMR spectroscopy, traveling-wave ion-mobility mass spectrometry (TWIM MS), molecular modeling, UV/Vis absorption spectroscopy, photoluminescence, and cyclic voltammetry. A gradual increase of the collision cross sections of the Fe(II) metallomacrocycles was observed with a successive increase of the number and molecular size of the ligands. The combination of ion-mobility mass spectrometry and NMR techniques unveils structural features that agree well with calculations. Extinction coefficients and emission are significantly modulated by increasing the ring size and changing the metal ion center from Fe(II) to Cd(II) .     

Specific recognition of syndiotactic poly(methacrylic acid) in porous isotactic poly(methyl methacrylate) thin films based on the effects of stereoregularity,temperature, and solvent

The effects of stereoregularity, temperature, and solvent on the specific recognition of syndiotactic (st)‐poly(methacrylic acid) (PMAA) in macromolecularly porous isotactic (it)‐poly(methyl methacrylate) films were investigated to give important insights into the regularity and stability of nanospaces in the it‐PMMA films as well as template polymerization. The porous it‐PMMA films were fabricated on quartz crystal microbalance (QCM) substrates via the layer‐by‐layer (LbL) assembly of it‐PMMA/st‐PMAA, plus the st‐PMAA extraction from the assembly. QCM analysis and infrared spectroscopy revealed the first case of stereocomplex formation using st‐PMAA with lower stereoregularity (rr = 73%) in the LbL films, while st‐PMAA obtained with conventional free radical polymerization (rr = 62%) was barely incorporated into the porous it‐PMMA films. The maximum st‐PMAA incorporation increased from 25 to 40 °C, but there were almost no difference between 40 and 55 °C, indicating that the it‐PMMA crystallization would also be accelerated with increasing temperature. The studies on st‐PMAA incorporation with various complexing solvents revealed that the host it‐PMMA in the porous films could only form the original stereocomplex with 2/1 unit‐molar stoichiometry (st‐PMAA/it‐PMMA) in acetonitrile/water or ethanol/water. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3651–3657, 2010     

Remarkably selective saccharide recognition by solid-supported peptide boronic acids

The affinity of nine different saccharides to a library of solid-supported pentapeptide diboronic acids was measured using a competitive binding assay, which employed alizarin as the chromophoric indicator. Considerable variation in carbohydrate binding strengths was observed, with association constants in the range 60-5300 M⁻¹ being recorded. Of particular note was the 7-fold preference for CMP over AMP shown by peptide 1. Enantioselectivity was also observed, with peptide 4 showing an 8.4-fold binding preference for l-glucose over d-glucose. The remarkably selective binding characteristics of these boronic acid-peptide hybrids suggest their potential use in carbohydrate sensors and cell-specific diagnostics and therapeutics.     

Palladium(II)-mediated assembly of biotinylated ion channels

Simple synthetic methodology has been used to create biotinylated pyridyl cholate lipids that can undergo multiple self-assembly events when inserted into phospholipid vesicles; Pd(II) links cholates into transmembrane lipids, while avidin laterally clusters these complexes together and concomitantly assembles the vesicles into aggregates. The transmembrane assembly of cholates by Pd(II) "opened" the ion channels, whereas avidin addition produced vesicle aggregates, giving a system that mimicked both transmembrane transport and cellular adhesion. Complexation of these Pd(II)-linked cholates by avidin gave a measurable decrease in ion flow, suggesting some channels became blocked or were prevented from adopting the optimum geometry for ion conduction. This reflects the importance of spatially appropriate preorganisation when generating active supramolecular assemblies.     

Self‐Assembled Discrete Molecules for Sensing Nitroaromatics

Efficient sensing of trace amount nitroaromatic (NAC) explosives has become a major research focus in recent time due to concerns over national security as well as their role as environment pollutants. NO₂‐containing electron‐deficient aromatic compounds, such as picric acid (PA), trinitrotoluene (TNT), and dinitrotoluene (DNT), are the common constituents of many commercially available chemical explosives. In this article, we have summarized our recent developments on the rational design of electron‐rich self‐assembled discrete molecular sensors and their efficacy in sensing nitroaromatics both in solution as well as in vapor phase. Several π‐electron‐rich fluorescent metallacycles (squares, rectangles, and tweezers/pincers) and metallacages (trigonal and tetragonal prisms) have been synthesized by means of metal–ligand coordination‐bonding interactions, with enough internal space to accommodate electron‐deficient nitroaromatics at the molecular level by multiple supramolecular interactions. Such interactions subsequently result in the detectable fluorescence quenching of sensors even in the presence of trace quantities of nitroaromatics. The fascinating sensing characteristics of molecular architectures discussed in this article may enable future development of improved sensors for nitroaromatic explosives.     

When Self‐Assembly Fails: Stepwise Metal‐Directed Synthesis of [2]Catenanes

On the attempted synthesis of a series of homo‐ and heterotrimetallic [2]catenanes by the self‐assembly of a 2‐(pyridin‐4‐ylmethyl)‐2,7‐diazapyrenium ligand, (ethylenediamine)palladium(II) or platinum(II) nitrate, and a dioxoaryl bis(N‐monoalkyl‐4,4′‐bipyridinium) salt as building blocks, both the one‐pot direct self‐assembly of the components and the so called “magic ring” approach fail to produce the expected trinuclear [2]catenanes under thermodynamically driven conditions. However, one of the target supramolecules is obtained by following a stepwise protocol, consisting of the threading of a dinuclear Pt^II metallacycle and the dioxoaryl bis(N‐monoalkyl‐4,4′‐bipyridinium) axle, followed by kinetically controlled Pt^II‐directed cyclization of the corresponding pseudorotaxane.     

Self-assembled, kinetically locked, Ru(II)-based metallomacrocycles: physical, structural, and modeling studies

By using a "complex as ligand approach," the metal-ion-templated self-assembly of heterometallic tetranuclear metallomacrocycles containing kinetically locked Ru(II) centers is described. Depending on the metal-ion template employed in the self-assembly process, the final macrocycle can be kinetically labile or inert. Electrochemical studies reveal that the kinetically inert macrocycles display reversible Ru(III/II) oxidation couples. The crystal structure of a kinetically inert Ru2Re2 macrocycles reveals a structurally complex palmate anion-binding pocket. Host-guest studies carried out with the same macrocyle in organic solvents reveals that the complex functions as a luminescent sensor for anions and that binding affinity and luminescent modulation is dependent on the structural nature and charge of the guest anion. Computational density functional theory (DFT) studies support the hypothesis that the luminescence of the macrocycle is from a 3MLCT state and further suggests that the observed guest-induced luminescence changes are most likely due to modulation of nonradiative decay processes.